genome.fa.s46.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  76  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15367978--15368055	18	4.5	17	75	18	72	69	1	5	24	1.16
15367978--15368061	25	3.3	25	69	9	71	69	1	4	25	1.15
15367978--15368077	51	2.0	50	82	5	121	68	2	6	24	1.23
15368928--15368961	16	2.2	15	89	5	50	35	2	26	35	1.72
15369774--15370051	139	2.0	139	87	2	407	45	5	13	35	1.66
15372458--15372487	14	2.1	14	93	0	51	63	3	20	13	1.43
15373856--15373888	15	2.3	15	89	5	50	69	0	0	30	0.88
15382516--15382573	30	1.9	30	92	0	98	36	10	22	31	1.88
15387740--15387788	10	4.9	10	80	9	55	63	2	2	32	1.17
15387739--15387774	3	11.3	3	88	11	54	66	0	0	33	0.92
15388156--15388281	29	4.4	29	79	9	125	50	32	1	15	1.54
15389900--15389945	2	23.5	2	78	12	51	41	2	2	54	1.25
15390440--15390592	76	2.0	76	92	0	252	27	4	28	39	1.76
15391228--15391395	92	1.8	92	83	2	221	36	20	11	30	1.89
15392635--15392691	17	3.4	17	97	0	105	36	19	0	43	1.51
15392696--15392906	58	3.6	58	89	3	325	39	11	7	41	1.70
15392928--15392980	5	10.2	5	76	15	54	77	0	3	18	0.92
15392937--15392986	6	8.7	6	84	6	52	76	0	6	18	0.99
15393853--15393900	17	2.8	16	81	9	51	66	0	4	29	1.10
15393861--15393975	20	5.8	20	72	11	67	60	1	6	32	1.32
15393867--15393920	23	2.3	23	87	0	81	66	0	5	27	1.13
15393889--15393989	48	2.1	47	80	10	116	57	1	5	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15393892--15394039	24	6.6	22	69	20	76	57	1	5	35	1.30
15393965--15394009	20	2.2	20	100	0	90	53	0	4	42	1.21
15393912--15394012	48	2.1	47	80	7	114	55	1	4	37	1.33
15394034--15394075	13	3.3	13	76	6	50	76	2	2	19	1.01
15394020--15394073	6	8.3	6	82	10	54	74	1	1	22	1.02
15394253--15394354	45	2.3	45	92	0	168	41	26	11	20	1.87
15394354--15394648	42	7.0	42	75	4	245	39	21	14	24	1.91
15395629--15395698	15	4.5	16	73	8	56	5	14	0	80	0.89
15395630--15395699	13	5.3	13	79	14	56	5	12	0	81	0.86
15395629--15395698	8	9.0	8	75	12	56	5	14	0	80	0.89
15395635--15395680	15	3.2	15	87	6	60	6	13	0	80	0.89
15406214--15406251	16	2.4	16	86	4	51	50	0	7	42	1.31
15406120--15406430	58	5.4	58	84	7	393	39	12	6	40	1.69
15406120--15406427	169	1.8	171	88	4	480	39	12	6	41	1.69
15406458--15406527	6	12.2	6	86	7	85	78	0	4	17	0.90
15406451--15406521	23	3.1	22	84	11	90	78	0	2	18	0.86
15406453--15406576	9	13.5	10	69	23	51	70	3	3	23	1.17
15406453--15406583	23	6.0	23	68	21	77	70	3	3	23	1.16
15407354--15407472	22	5.3	20	70	22	71	60	0	6	32	1.23
15407399--15407471	24	3.1	23	75	13	76	60	0	5	34	1.20
15407398--15407452	28	2.0	27	89	3	83	63	0	3	32	1.12
15407393--15407495	24	4.5	23	73	23	67	57	0	5	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407486--15407553	13	5.0	14	76	18	56	70	2	1	25	1.09
15407490--15407555	9	7.3	9	73	17	57	72	3	1	22	1.06
15407486--15407540	17	3.2	16	87	12	74	69	1	1	27	1.09
15407486--15407555	36	2.0	34	86	5	95	71	2	1	24	1.08
15409135--15409169	18	2.0	17	88	5	52	45	0	0	54	0.99
15409516--15409566	21	2.4	21	86	3	66	52	1	1	43	1.23
15411339--15411421	11	7.6	10	74	17	60	59	7	0	33	1.25
15411334--15411475	33	4.3	33	83	5	171	56	7	0	35	1.32
15411349--15411475	11	11.5	11	72	6	105	58	5	0	35	1.27
15411464--15411685	21	10.7	21	83	4	254	46	2	2	48	1.26
15411471--15411592	27	4.5	28	73	21	84	45	3	0	50	1.23
15411464--15411685	104	2.1	105	82	3	270	46	2	2	48	1.26
15411464--15411683	83	2.7	83	82	5	257	46	2	2	48	1.27
15411687--15411725	16	2.4	16	83	12	53	41	0	2	56	1.13
15418758--15418813	13	4.2	13	81	2	67	85	3	0	10	0.71
15418761--15418811	26	1.9	26	88	4	75	84	3	0	11	0.75
15418762--15418816	14	3.6	15	79	16	60	83	5	0	10	0.79
15418761--15418813	27	1.9	27	84	3	70	84	3	0	11	0.73
15419357--15419415	26	2.3	26	85	2	75	71	6	3	18	1.23
15424821--15424857	19	1.9	19	88	0	56	56	2	10	29	1.47
15424859--15424884	5	5.2	5	100	0	52	0	38	0	61	0.96
15427874--15427966	20	4.9	20	67	20	56	18	7	27	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15427893--15427940	19	2.5	19	79	3	51	14	14	29	41	1.85
15427936--15428058	8	15.8	8	76	8	103	19	2	29	48	1.61
15427932--15428058	24	5.4	24	74	10	120	19	2	29	48	1.61
15432337--15432552	115	1.9	115	89	3	337	38	14	11	35	1.82
15433954--15434021	28	2.4	29	82	7	77	2	4	11	80	0.96
15433967--15434020	22	2.4	23	81	6	58	3	3	11	81	0.95
15434041--15434233	35	5.4	36	73	9	146	51	14	16	18	1.77
15434054--15434304	106	2.4	107	84	4	310	51	13	16	18	1.76
15434172--15434359	71	2.7	72	79	4	213	52	12	17	17	1.74
15434156--15434304	35	4.2	36	72	13	112	50	13	18	18	1.78
15434595--15434771	35	5.0	35	80	1	165	48	17	19	14	1.82
15434595--15434734	70	2.0	72	87	2	203	48	17	20	13	1.81
15434543--15434756	36	6.0	36	78	4	168	47	14	21	16	1.82
15434672--15434826	36	4.4	34	74	16	109	46	16	22	14	1.83
15434605--15434826	35	6.3	35	76	13	136	47	17	20	14	1.83
15435497--15435537	21	2.0	21	85	0	55	36	9	24	29	1.87
15435417--15435613	97	2.1	95	85	3	261	33	11	17	37	1.86
15445361--15445423	29	2.1	30	85	2	83	31	23	11	33	1.90
15450527--15450555	10	3.0	10	95	5	51	37	0	0	62	0.96
15453203--15453235	17	1.9	17	93	0	57	24	0	18	57	1.40
15454879--15454916	19	1.9	19	89	5	58	76	0	2	21	0.91
15454864--15454920	20	2.7	21	78	15	64	71	0	5	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15455935--15455987	6	8.8	6	77	8	54	58	1	3	35	1.27
15456307--15456497	96	2.0	96	95	0	346	47	12	7	32	1.69
15456558--15456822	43	6.2	43	80	0	305	38	15	13	32	1.87
15456558--15456822	129	2.1	129	87	1	379	38	15	13	32	1.87
15457149--15457259	17	6.6	17	67	13	68	42	11	9	36	1.75
15457160--15457254	34	2.8	33	75	7	86	42	11	10	35	1.76
15457232--15457293	18	3.6	18	75	14	58	37	9	9	43	1.71
15457350--15457382	17	2.0	17	88	5	50	45	21	6	27	1.75
15457357--15457453	48	2.0	48	95	0	176	38	13	11	37	1.81
15457433--15457536	34	3.1	33	77	13	95	35	5	14	44	1.69
15462511--15462586	40	1.9	40	88	0	116	53	9	11	25	1.66
15464640--15464677	19	2.0	20	85	15	53	60	23	0	15	1.35
15465808--15465898	38	2.4	39	81	1	112	26	13	19	40	1.88
15466650--15466708	26	2.4	25	77	5	66	76	0	6	16	1.00
15466705--15466750	21	2.2	22	88	7	69	76	8	0	15	1.02
15466689--15466781	26	3.5	26	70	12	73	75	6	2	16	1.11
15466726--15466778	18	3.2	16	77	12	63	75	3	1	18	1.05
15476413--15476518	39	2.7	38	95	2	185	47	5	5	41	1.51
15476459--15476526	4	16.2	4	75	24	61	47	2	4	45	1.38
15480818--15480860	23	1.9	23	86	13	63	6	18	0	74	1.04
15481005--15481052	24	2.0	24	91	0	78	50	0	2	47	1.12
15482782--15482826	24	2.0	23	87	12	67	37	4	0	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15483094--15483127	2	17.0	2	100	0	68	50	50	0	0	1.00
15490928--15491270	173	2.0	173	95	0	623	40	17	9	32	1.82
15493273--15493327	10	5.5	10	73	0	56	43	18	12	25	1.85
15493269--15493328	20	3.0	20	82	0	84	43	16	13	26	1.85
15495454--15495522	19	3.7	18	78	5	68	42	33	1	23	1.63
15497152--15497187	13	2.8	13	88	12	56	80	0	19	0	0.71
15497152--15497188	14	2.7	15	84	16	53	81	0	18	0	0.70
15498018--15498066	20	2.5	20	100	0	98	38	12	22	26	1.89
15504251--15504304	22	2.5	22	93	0	90	62	9	9	18	1.51
15508725--15508962	19	12.9	19	66	17	65	15	2	37	43	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125