genome.fa.s46.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  94  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18335744--18335799	7	8.0	7	78	13	62	17	0	3	78	0.89
18335734--18335796	19	3.2	21	78	13	71	17	0	4	77	0.93
18335739--18335799	13	4.5	13	86	10	79	18	0	3	78	0.88
18335781--18335849	31	2.3	30	81	13	88	30	4	0	65	1.12
18335852--18335897	20	2.3	20	80	0	56	30	8	4	56	1.49
18336193--18336233	22	1.9	22	90	5	66	24	0	14	60	1.34
18336679--18336753	15	4.9	15	79	12	73	28	0	1	70	0.95
18336683--18336725	8	5.8	8	81	13	56	30	0	0	69	0.88
18336718--18336749	3	10.7	3	93	0	55	28	0	3	68	1.04
18336683--18336758	18	4.6	17	77	22	74	30	0	1	68	0.98
18336780--18336854	5	15.8	5	75	18	63	14	4	1	80	0.93
18336780--18336854	9	7.9	10	81	11	63	14	4	1	80	0.93
18336775--18336867	14	6.6	13	74	21	73	15	3	2	79	0.95
18336770--18336849	26	3.1	25	77	15	74	15	3	2	78	0.99
18336779--18336856	21	3.8	20	71	21	63	14	3	1	80	0.91
18336780--18336867	10	8.7	9	80	13	68	14	3	2	79	0.96
18336802--18336867	23	2.9	23	82	10	66	13	4	1	80	0.94
18336879--18337102	118	1.9	115	88	8	337	41	7	13	38	1.72
18336872--18337102	58	4.0	58	86	8	312	42	6	12	37	1.70
18343116--18343497	141	2.7	143	81	8	395	41	14	13	30	1.84
18345587--18345638	7	7.4	7	82	6	52	76	0	21	1	0.87
18345582--18345636	12	4.3	12	78	19	58	76	0	21	1	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18345932--18345985	27	2.0	26	89	10	81	81	1	12	3	0.91
18345929--18345984	18	3.2	18	75	12	53	83	1	10	3	0.83
18347136--18347215	22	3.6	22	72	8	63	37	6	13	42	1.70
18347081--18347388	46	6.8	45	75	10	211	36	6	13	43	1.71
18347240--18347319	22	3.5	22	75	6	79	31	5	13	50	1.63
18347127--18347378	91	2.8	91	75	8	246	35	7	13	43	1.71
18347324--18347394	22	3.2	23	73	13	60	33	7	19	39	1.79
18347649--18347703	17	3.2	17	72	10	58	34	10	14	40	1.81
18347837--18347895	18	3.3	18	75	13	59	33	15	10	40	1.81
18347829--18347900	36	2.0	37	86	8	103	37	12	9	40	1.76
18347955--18348006	17	3.1	17	78	13	54	36	15	15	32	1.89
18348085--18348138	18	3.1	17	78	7	54	29	9	12	48	1.73
18348301--18348385	43	2.0	43	83	6	109	37	16	9	36	1.81
18349786--18349830	19	2.4	19	81	7	56	13	2	4	80	0.97
18349798--18349881	13	6.3	13	69	25	52	15	4	7	72	1.23
18350076--18350155	38	2.1	36	81	6	88	48	10	8	32	1.67
18359320--18359469	51	2.9	51	85	3	203	36	8	18	38	1.80
18359322--18359468	52	2.8	52	87	1	206	36	8	18	36	1.81
18367656--18367700	24	1.9	24	86	4	65	37	15	11	35	1.83
18375209--18376129	483	1.9	484	84	2	1251	39	13	18	28	1.89
18378675--18378824	51	2.9	51	82	3	185	36	7	17	38	1.78
18378677--18378824	52	2.9	51	83	2	188	37	7	17	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18394532--18394615	29	2.8	29	87	5	105	47	1	0	51	1.08
18395131--18395176	23	2.0	22	87	4	65	71	2	2	23	1.08
18395170--18395220	23	2.2	23	78	0	57	54	0	0	45	0.99
18395231--18395279	18	2.7	18	74	3	53	57	2	0	40	1.10
18395250--18395303	16	3.4	17	72	10	51	53	0	0	46	1.00
18400772--18400820	21	2.4	21	86	6	66	6	14	2	77	1.05
18403103--18403203	50	2.0	50	90	0	157	34	22	12	29	1.92
18403560--18403621	21	3.1	19	77	13	61	79	8	1	11	1.01
18403573--18403620	22	2.2	22	88	3	71	83	4	2	10	0.87
18403573--18403621	7	7.0	7	77	9	55	81	4	2	12	0.91
18407552--18407789	126	1.9	126	89	0	368	27	2	34	36	1.71
18409638--18409671	5	7.0	5	86	6	52	76	0	2	20	0.92
18409638--18409671	14	2.4	14	90	5	50	76	0	2	20	0.92
18412508--18412739	63	3.7	63	77	9	222	37	12	15	34	1.86
18412184--18412645	189	2.4	187	78	9	490	35	14	14	36	1.86
18412702--18412859	59	2.7	59	82	3	165	28	18	12	40	1.87
18415424--18415458	16	2.2	16	89	0	52	45	8	14	31	1.75
18426482--18426900	120	3.5	119	80	3	419	18	21	16	44	1.87
18427171--18427222	3	17.7	3	92	4	88	32	0	1	65	1.04
18428119--18428149	16	1.9	16	93	0	53	32	3	3	61	1.28
18429226--18429281	25	2.2	25	87	3	76	3	7	7	82	0.95
18429252--18429302	20	2.4	22	90	6	79	1	7	5	84	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18429238--18429302	25	2.6	26	85	7	89	3	7	6	83	0.91
18429276--18429318	19	2.3	18	84	11	52	6	13	2	76	1.08
18429775--18429810	7	5.6	7	87	12	51	11	13	0	75	1.06
18429780--18429818	18	2.2	17	90	4	60	7	15	0	76	0.99
18429775--18429815	12	3.3	13	80	19	52	9	12	0	78	0.98
18429920--18429968	26	1.9	25	84	12	64	51	4	24	20	1.65
18431981--18432033	24	2.4	22	84	12	65	73	0	9	16	1.08
18432437--18432484	21	2.3	21	92	0	78	62	14	4	18	1.47
18432550--18432583	12	2.8	12	95	0	59	52	20	0	26	1.46
18432880--18432917	18	2.2	18	85	4	51	78	2	13	5	1.02
18432904--18432929	9	2.9	9	100	0	52	80	0	7	11	0.89
18432927--18432988	3	22.0	3	77	12	51	59	3	4	32	1.34
18433221--18433784	115	5.0	115	76	6	441	44	15	21	18	1.87
18433223--18433781	224	2.5	229	77	6	514	44	15	21	18	1.87
18444204--18444254	18	2.7	19	72	6	50	60	1	19	17	1.45
18444589--18444626	20	1.9	20	89	10	60	31	0	5	63	1.17
18444829--18444875	19	2.5	19	89	3	69	80	2	4	12	0.94
18445154--18445235	31	2.6	31	82	3	85	46	20	7	25	1.76
18445662--18445709	17	2.8	16	78	12	51	72	6	16	4	1.20
18445764--18445879	52	2.2	52	84	3	144	26	22	26	24	2.00
18445764--18445889	26	4.8	26	68	9	87	29	21	25	23	1.99
18450154--18450219	19	3.5	20	79	8	66	25	18	16	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18450223--18450316	13	7.1	13	78	4	80	17	6	19	57	1.60
18450223--18450316	26	3.5	26	74	5	89	17	6	19	57	1.60
18450438--18450507	29	2.4	30	79	11	74	32	2	1	62	1.18
18450923--18450954	7	4.7	7	96	3	57	25	0	0	75	0.81
18451996--18452030	18	1.9	18	88	0	52	74	14	8	2	1.17
18452768--18452816	22	2.2	23	82	17	59	34	0	2	63	1.06
18452646--18453760	612	1.8	618	87	5	1686	38	4	9	46	1.58
18455457--18455495	21	1.9	20	85	15	53	30	10	17	41	1.83
18457868--18457905	13	2.8	14	80	8	51	5	10	2	81	0.94
18457994--18458018	13	1.9	13	100	0	50	8	8	0	84	0.79
18464401--18464437	3	12.3	3	100	0	74	67	0	0	32	0.91
18465061--18465240	101	1.8	101	85	6	260	47	3	6	42	1.46
18464928--18465387	226	2.0	235	84	8	622	45	3	6	44	1.44
18465175--18465409	130	1.8	125	80	8	276	46	2	6	43	1.45
18466044--18466098	22	2.6	21	75	16	51	54	1	1	41	1.21
18466164--18466193	15	2.0	15	93	0	51	46	0	3	50	1.18
18466064--18466210	57	2.6	58	91	4	235	52	2	4	41	1.32
18466663--18467059	144	2.7	145	82	2	449	35	14	8	42	1.75
18482469--18482518	21	2.4	21	82	0	64	74	6	0	20	1.03
18483901--18483973	30	2.3	32	81	6	87	53	8	15	23	1.68
18483955--18484060	33	3.2	32	75	7	95	52	7	13	26	1.66
18484133--18484223	33	2.7	33	73	8	85	39	13	23	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18484192--18484259	33	2.1	33	88	0	100	45	10	20	23	1.81
18484343--18484486	33	4.4	33	75	1	121	49	13	15	22	1.78
18484338--18484486	66	2.3	66	80	6	169	48	14	14	22	1.80
18484340--18484515	33	5.4	33	68	14	96	47	13	15	22	1.81
18488051--18488104	15	3.6	15	81	13	67	22	0	29	48	1.51
18488051--18488090	16	2.6	15	92	4	62	25	0	30	45	1.54
18488063--18488362	30	10.2	28	71	12	158	22	1	28	48	1.59
18488081--18488132	14	3.7	14	71	0	50	19	0	25	55	1.43
18488064--18488281	88	2.5	87	83	5	269	23	0	27	48	1.54
18488063--18488281	58	3.7	58	75	12	180	23	0	27	48	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125