genome.fa.s46.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  108  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20874411--20874467	17	3.2	17	85	11	78	21	1	1	75	0.98
20874598--20874710	21	5.1	21	70	18	61	20	5	7	66	1.38
20875497--20875551	17	2.9	19	84	15	78	20	0	9	70	1.13
20875580--20875670	41	2.2	39	78	18	94	15	3	4	76	1.07
20875676--20875844	59	2.9	58	92	3	270	47	6	11	34	1.65
20884229--20884320	8	11.6	8	77	17	70	79	0	9	10	0.94
20884228--20884301	38	1.9	38	97	0	139	79	0	8	12	0.92
20884228--20884306	9	8.7	9	81	13	90	81	0	7	11	0.89
20885315--20885529	42	5.1	41	87	2	268	24	18	22	34	1.96
20885315--20885529	83	2.6	84	87	2	290	24	18	22	34	1.96
20885540--20885569	15	1.9	16	93	6	53	86	10	3	0	0.67
20885536--20885575	21	1.9	21	90	10	64	85	10	5	0	0.75
20885537--20885572	8	4.6	8	86	6	56	88	8	2	0	0.59
20885753--20885809	6	9.2	6	83	7	62	19	1	3	75	1.04
20885763--20885789	14	1.9	14	100	0	54	22	3	7	66	1.33
20885963--20886013	22	2.3	22	86	6	68	21	5	7	64	1.41
20886363--20886400	19	2.0	19	89	0	58	28	10	21	39	1.86
20886908--20886967	8	7.4	8	80	10	59	15	3	0	81	0.81
20886910--20886965	4	13.8	4	78	14	53	16	3	0	80	0.85
20887016--20887235	59	3.7	59	83	10	306	43	7	15	34	1.74
20887024--20887234	117	1.8	116	91	5	354	41	7	15	36	1.75
20888652--20888704	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20889347--20889399	26	2.0	26	96	0	97	28	20	22	28	1.99
20891319--20891371	26	2.0	26	89	7	81	32	20	20	26	1.98
20891344--20891783	159	2.8	159	75	6	419	24	30	26	17	1.97
20891819--20891871	26	2.0	26	85	7	72	28	18	24	28	1.98
20892162--20892240	26	3.0	26	98	0	149	24	20	29	26	1.99
20891676--20892705	552	1.9	551	78	3	1129	22	29	27	20	1.99
20892397--20892834	159	2.8	156	75	6	387	23	30	27	18	1.97
20892872--20892924	26	2.0	26	88	0	79	26	18	26	28	1.98
20893927--20893976	25	2.0	26	92	4	84	26	20	24	30	1.98
20894272--20894340	26	2.7	26	93	0	111	30	18	21	28	1.97
20894631--20894683	26	2.0	26	85	7	72	24	18	28	28	1.98
20895353--20895405	26	2.0	26	89	7	81	30	20	22	26	1.98
20895696--20895747	26	2.0	26	92	0	86	25	13	28	32	1.93
20901575--20901627	26	2.0	26	85	7	72	26	11	24	37	1.89
20902076--20902128	26	2.0	26	92	0	88	24	18	28	28	1.98
20902807--20902859	26	2.0	26	89	7	81	30	22	20	26	1.98
20904149--20904198	26	1.9	26	91	0	82	30	28	18	24	1.97
20904822--20904873	26	2.0	26	88	0	77	28	26	19	25	1.98
20905164--20905216	26	2.0	26	85	7	72	28	24	16	30	1.97
20904751--20905416	343	1.9	343	82	3	829	19	26	28	24	1.99
20904749--20905533	343	2.3	343	78	4	794	21	26	27	24	1.99
20905591--20905642	25	2.0	26	88	3	79	28	28	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20905901--20905952	26	2.0	26	85	7	70	26	23	21	28	1.99
20905591--20906358	311	2.5	310	79	5	751	21	26	28	22	1.99
20906759--20906809	26	2.0	26	88	7	77	31	23	13	31	1.93
20907169--20907634	159	3.0	156	78	4	470	18	26	31	22	1.97
20907255--20907633	157	2.4	160	80	3	419	19	26	30	23	1.98
20907607--20907659	26	2.0	26	85	7	72	28	22	20	28	1.99
20907506--20908014	196	2.7	196	79	6	483	22	26	26	24	2.00
20907883--20908648	159	4.8	158	75	4	592	20	26	29	23	1.99
20907896--20908648	317	2.4	317	82	2	913	20	26	29	23	1.99
20908816--20908871	26	2.2	26	90	0	85	30	25	17	26	1.97
20908777--20909388	173	3.4	185	77	9	447	22	27	26	23	1.99
20909004--20909056	26	2.0	26	89	7	81	28	22	18	30	1.98
20909177--20909229	26	2.0	26	88	0	79	30	26	18	24	1.98
20909519--20909570	26	2.0	26	92	7	88	26	25	19	28	1.98
20910194--20910218	11	2.3	11	100	0	50	20	28	32	20	1.97
20910513--20910565	23	2.3	23	100	0	106	39	22	7	30	1.82
20910829--20910881	26	2.0	26	88	0	79	26	26	18	28	1.98
20910896--20911311	159	2.6	159	77	3	417	19	28	31	21	1.97
20911331--20911383	26	2.0	26	85	7	72	28	22	16	32	1.96
20911172--20911737	195	3.0	184	75	12	473	20	25	29	23	1.99
20911526--20911578	26	2.0	26	92	0	88	28	28	18	24	1.98
20911871--20911921	26	2.0	26	92	7	86	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20912603--20912655	26	2.0	26	89	7	81	26	24	20	28	1.99
20913063--20913115	26	2.0	26	85	7	72	28	24	18	28	1.98
20912502--20913427	460	2.0	461	84	0	1208	19	27	28	24	1.98
20914144--20914545	159	2.5	157	73	6	371	22	26	29	21	1.99
20914844--20914896	26	2.0	26	85	0	70	26	22	20	30	1.98
20915889--20915941	26	2.0	26	88	0	79	30	28	16	24	1.97
20916072--20916124	26	2.0	26	85	7	72	28	20	18	32	1.97
20915818--20916871	184	5.5	184	74	13	692	20	26	27	24	1.99
20915850--20916871	391	2.7	378	80	6	1078	21	26	28	24	1.99
20917016--20917094	26	3.0	25	92	7	131	26	25	20	27	1.99
20917211--20917498	159	1.8	159	80	3	346	20	24	30	24	1.99
20917583--20917984	159	2.5	158	71	11	343	20	25	31	22	1.98
20918057--20918109	26	2.0	26	92	7	90	26	22	20	30	1.98
20918424--20918476	26	2.0	26	88	0	79	30	26	16	26	1.97
20918925--20918975	26	2.0	26	96	0	93	25	25	19	29	1.99
20921125--20921489	159	2.3	160	82	5	443	22	25	27	23	2.00
20921461--20921513	26	2.0	26	89	7	81	26	22	20	30	1.98
20921828--20921878	26	2.0	26	88	7	77	25	25	19	29	1.99
20923016--20923068	26	2.0	26	92	0	88	26	26	18	28	1.98
20923505--20923557	26	2.0	26	89	7	81	28	24	18	28	1.98
20923636--20924096	184	2.5	184	79	4	493	19	27	28	24	1.99
20924051--20924413	159	2.3	158	79	6	394	19	25	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20924385--20924437	26	2.0	26	85	7	72	28	22	18	30	1.98
20925097--20925147	26	2.0	26	88	7	77	29	29	15	25	1.96
20928157--20928218	24	2.6	24	92	0	97	24	32	19	24	1.98
20930629--20930679	26	2.0	26	88	7	77	27	25	15	31	1.96
20930824--20930876	26	2.0	26	88	0	79	28	26	18	26	1.98
20931167--20931219	26	2.0	26	92	7	90	26	24	20	28	1.99
20931241--20931270	12	2.5	12	94	0	51	40	23	26	10	1.86
20931269--20931708	158	2.8	159	77	4	393	20	26	28	24	1.99
20931860--20931912	26	2.0	26	92	0	88	28	28	18	24	1.98
20932053--20932105	26	2.0	26	88	0	79	28	30	16	24	1.97
20933051--20933103	26	2.0	26	89	7	81	32	24	16	26	1.97
20933573--20933625	26	2.0	26	92	0	88	26	22	20	30	1.98
20933394--20933805	206	2.0	205	85	4	562	20	25	28	25	1.99
20933766--20934123	159	2.3	160	82	4	433	19	25	29	24	1.99
20934095--20934147	26	2.0	26	92	7	90	26	24	20	28	1.99
20934819--20934871	26	2.0	26	92	0	88	26	26	22	24	2.00
20935319--20935371	26	2.0	26	85	0	70	26	22	20	30	1.98
20935515--20935567	26	2.0	26	88	0	79	28	26	20	24	1.99
20935216--20935573	196	1.8	196	84	2	486	21	24	28	25	1.99
20935858--20935910	26	2.0	26	85	7	72	28	24	16	30	1.97
20937687--20938289	159	3.8	159	79	4	538	18	27	30	23	1.98
20938441--20938805	157	2.3	156	80	8	400	20	24	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20938775--20938827	26	2.0	26	89	7	81	28	22	18	30	1.98
20939243--20939295	26	2.0	26	88	0	79	28	28	16	26	1.97
20939586--20939638	26	2.0	26	92	7	90	26	24	20	28	1.99
20940292--20940316	12	2.1	12	100	0	50	36	8	16	40	1.77
20940344--20940848	159	3.2	159	76	7	429	20	25	29	24	1.99
20940820--20940872	26	2.0	26	82	7	63	28	18	20	32	1.97
20941017--20941069	26	2.0	26	96	0	97	26	28	20	24	1.99
20941196--20941602	158	2.6	157	75	6	388	20	26	31	21	1.98
20941043--20941701	159	4.2	157	75	6	526	19	26	29	24	1.98
20941043--20941637	317	1.9	317	82	4	754	19	27	30	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125