genome.fa.s46.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  59  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11703575--11703605	14	2.2	14	94	0	53	0	3	9	87	0.66
11705387--11705432	21	2.2	21	96	0	83	52	0	0	47	1.00
11705427--11705461	18	1.9	18	88	0	52	57	0	0	42	0.99
11712406--11712440	10	3.4	10	84	7	52	22	0	2	74	0.95
11712581--11713658	237	4.6	233	74	8	670	31	13	4	50	1.62
11712413--11713184	237	3.3	234	76	8	618	32	12	4	50	1.60
11714968--11715007	16	2.5	16	92	8	64	27	7	5	60	1.45
11715344--11715377	2	17.0	2	93	0	59	47	0	0	52	1.00
11722881--11722917	2	18.5	2	88	0	56	45	0	5	48	1.25
11731458--11731493	17	2.1	17	89	0	54	50	11	5	33	1.61
11731848--11731881	2	17.0	2	100	0	68	50	0	0	50	1.00
11732150--11732175	4	6.5	4	100	0	52	23	26	23	26	2.00
11735171--11735229	23	2.5	24	81	10	77	42	3	1	52	1.28
11738823--11738887	32	2.0	32	90	0	103	10	12	4	72	1.26
11741051--11741110	31	1.9	31	82	0	75	13	23	5	58	1.55
11742962--11743005	3	14.7	3	100	0	88	34	0	0	65	0.93
11743572--11743678	54	2.0	54	90	0	169	47	0	3	47	1.26
11743634--11743708	36	2.1	38	82	9	95	42	0	5	52	1.24
11746931--11747056	66	1.9	67	85	4	175	30	10	3	55	1.52
11755301--11755334	13	2.6	13	80	0	50	67	0	0	32	0.91
11755990--11756027	20	1.9	19	89	5	58	52	0	0	47	1.00
11758117--11758173	24	2.3	25	82	8	64	10	12	0	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11758929--11758990	24	2.6	24	78	16	67	29	4	4	61	1.37
11759290--11759323	12	2.8	12	91	8	52	29	0	0	70	0.87
11759581--11759667	41	2.1	42	83	6	108	54	2	4	39	1.34
11759679--11759739	31	2.0	31	86	0	86	49	6	4	39	1.50
11760146--11760170	12	2.1	12	100	0	50	32	16	0	52	1.44
11766708--11766745	17	2.1	18	85	9	51	39	0	2	57	1.12
11767637--11767697	29	2.1	29	84	0	77	49	11	4	34	1.61
11768247--11768280	16	2.1	16	88	0	50	8	26	0	64	1.22
11768476--11768505	14	2.2	14	94	5	53	73	0	13	13	1.10
11783927--11786103	740	2.9	741	99	0	4331	29	14	16	39	1.88
11805871--11805949	41	1.9	41	89	0	122	40	10	17	31	1.83
11807406--11807437	15	2.1	15	94	0	55	40	9	6	43	1.62
11810965--11811016	22	2.4	22	83	0	59	59	3	9	26	1.46
11811221--11811273	21	2.5	20	70	8	52	37	3	1	56	1.28
11822742--11822816	34	2.2	32	80	15	82	37	1	0	61	1.05
11822768--11822815	16	2.9	16	75	12	53	39	2	0	58	1.10
11828703--11828755	23	2.3	23	90	9	81	62	1	3	32	1.24
11828748--11828825	20	3.6	20	73	21	68	55	1	1	42	1.16
11828726--11828822	46	2.1	47	86	5	135	55	2	2	40	1.23
11828750--11828802	26	2.0	27	85	10	74	56	1	1	39	1.21
11828832--11828918	39	2.3	39	84	6	106	45	6	11	35	1.67
11828856--11828932	39	2.0	39	87	5	111	48	5	9	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11831256--11831328	20	3.1	25	70	22	75	41	38	5	15	1.70
11831266--11831431	19	8.2	19	74	15	104	43	39	4	12	1.62
11831221--11831348	46	2.8	45	85	1	166	43	35	4	16	1.69
11831311--11831431	58	2.1	58	90	3	190	44	40	3	11	1.57
11831310--11831431	39	3.2	38	80	10	131	44	40	3	11	1.57
11831408--11831458	26	1.9	27	84	4	68	41	43	3	11	1.60
11831472--11831541	13	5.2	12	74	16	50	45	20	0	34	1.51
11831470--11831541	20	3.6	20	77	3	74	44	22	0	33	1.53
11831551--11831595	13	3.5	13	79	11	56	40	31	0	28	1.57
11831658--11831719	19	3.3	18	80	6	61	46	37	1	14	1.54
11831782--11831831	18	2.8	18	78	3	57	44	42	2	12	1.53
11831800--11831847	23	2.0	24	92	4	80	45	41	0	12	1.42
11832727--11832788	18	3.4	19	84	10	85	69	0	16	14	1.19
11832727--11832785	27	2.2	27	84	0	73	71	0	15	13	1.15
11832734--11832788	10	6.0	10	76	20	57	69	0	16	14	1.20
11833826--11833941	37	3.1	37	81	7	103	36	21	10	31	1.87
11838357--11838389	16	2.1	17	88	11	52	39	33	6	21	1.78
11838502--11838572	19	3.9	18	74	17	67	46	36	1	15	1.55
11838471--11838607	49	2.8	47	80	12	143	45	37	2	14	1.57
11841394--11841479	41	2.1	41	93	0	145	25	24	3	46	1.68
11843936--11844239	142	2.1	142	82	5	366	30	12	15	40	1.85
11844734--11844766	11	3.0	11	100	0	66	18	9	9	63	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11845735--11845800	31	2.2	30	86	2	87	37	36	6	19	1.77
11845778--11845821	18	2.5	17	78	10	52	45	34	0	20	1.51
11851490--11851527	15	2.5	15	91	0	58	34	26	21	18	1.96
11851571--11851633	17	3.5	17	73	26	58	14	4	4	76	1.12
11851571--11851636	21	3.1	20	76	10	60	15	4	4	75	1.12
11851778--11851822	17	2.6	18	86	6	58	55	0	22	22	1.44
11852749--11852833	5	15.8	5	71	22	57	21	0	5	72	1.05
11852743--11852832	21	4.2	21	73	10	67	18	1	5	74	1.07
11852774--11852863	34	2.6	36	80	15	102	23	0	8	67	1.18
11861802--11861852	24	2.2	23	92	3	84	41	15	11	31	1.83
11863912--11863955	22	2.0	22	86	4	61	77	0	6	15	0.97
11865061--11865201	38	3.7	38	86	1	201	17	12	21	48	1.80
11865469--11865625	77	2.0	77	97	0	296	22	8	5	63	1.45
11866651--11866686	7	5.1	7	89	0	54	19	0	0	80	0.71
11866630--11866691	21	3.0	20	79	11	54	16	4	0	79	0.90
11866631--11866725	14	7.0	13	73	11	66	16	2	4	76	1.03
11866711--11866757	24	2.0	23	91	4	76	27	0	10	61	1.29
11870310--11870350	17	2.4	17	87	0	55	36	2	19	41	1.65
11873114--11873172	28	2.1	27	81	9	66	55	3	1	38	1.26
11887793--11887836	15	3.1	15	81	15	58	31	2	6	59	1.36
11890149--11890183	6	5.8	6	96	0	61	37	0	11	51	1.38
11891085--11891432	177	2.0	177	97	0	651	29	16	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11895485--11895518	16	2.1	16	88	0	50	17	11	20	50	1.77
11896690--11896736	22	2.1	22	84	7	60	19	10	2	68	1.30
11898652--11898718	15	4.5	15	75	5	64	53	2	1	41	1.25
11901090--11901172	36	2.3	35	85	4	103	32	10	28	27	1.91
11904207--11904323	11	11.8	9	75	12	56	56	4	2	36	1.33
11904207--11904304	10	9.5	11	75	8	64	57	4	3	35	1.33
11904390--11904445	19	2.9	20	84	5	62	48	3	5	42	1.43
11904399--11904445	19	2.4	19	89	3	67	53	4	2	40	1.32
11904650--11904702	19	2.7	20	80	16	58	58	0	1	39	1.09
11904864--11904913	19	2.8	18	69	19	50	58	4	6	32	1.41
11904899--11904956	21	2.8	21	76	10	66	37	3	0	58	1.15
11905126--11905209	9	8.9	9	73	12	62	38	1	8	52	1.39
11905156--11905226	10	6.9	10	77	6	70	36	2	4	56	1.34
11905157--11905226	31	2.3	31	82	0	86	37	2	4	55	1.34
11905226--11905259	18	1.9	17	88	5	50	67	2	2	26	1.19
11908299--11908332	17	1.9	18	88	5	52	38	11	8	41	1.73
11916266--11916349	34	2.5	35	79	7	95	44	11	13	30	1.79
11918976--11919003	14	2.0	14	100	0	56	42	0	7	50	1.30
11920696--11920756	28	2.2	28	94	2	106	14	14	18	52	1.75
11931877--11931920	22	2.0	22	90	0	70	50	13	4	31	1.62
11936133--11936174	22	1.9	22	100	0	84	26	26	19	28	1.98
11938475--11938545	27	2.6	27	79	16	85	26	4	28	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11943560--11943621	26	2.4	26	86	0	88	27	24	8	40	1.83
11952994--11953153	82	2.0	82	83	0	203	36	13	23	25	1.92
11955325--11955374	21	2.5	21	93	6	86	48	0	0	52	1.00
11955348--11955405	29	2.0	29	83	3	73	51	0	0	48	1.00
11955875--11955992	11	10.7	11	73	16	93	61	9	0	28	1.26
11955909--11955992	23	3.6	24	84	9	95	60	10	0	28	1.30
11955989--11956068	32	2.5	33	82	9	103	60	8	5	26	1.47
11956000--11956069	32	2.2	33	89	7	108	62	8	5	22	1.45
11956018--11956046	14	2.1	14	93	6	51	58	13	6	20	1.58
11956014--11956083	33	2.2	33	87	10	101	64	8	4	22	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125