genome.fa.s46.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  100  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19335669--19335718	19	2.6	19	78	12	57	2	6	10	82	0.92
19335951--19336016	17	4.0	16	74	5	60	65	1	1	31	1.11
19335962--19336021	21	2.8	21	78	16	70	68	1	1	28	1.09
19357764--19357857	45	2.1	45	81	0	107	22	27	22	27	1.99
19357847--19357905	30	2.0	30	86	0	82	16	23	28	30	1.97
19361312--19362117	180	4.5	180	79	5	797	42	9	7	40	1.66
19362368--19362697	180	1.8	180	81	9	406	40	10	9	39	1.72
19362747--19363013	146	1.8	147	81	2	331	42	7	8	40	1.65
19362561--19363196	320	2.0	320	80	5	724	41	8	9	41	1.67
19365036--19365703	348	1.9	350	81	6	818	40	7	8	42	1.65
19364926--19365774	179	4.8	174	74	9	650	41	7	9	42	1.65
19366340--19367920	181	8.7	178	75	8	1079	41	9	9	39	1.70
19366340--19367920	363	4.4	357	76	7	1235	41	9	9	39	1.70
19366492--19367901	544	2.6	541	79	4	1347	41	9	9	39	1.69
19368121--19368157	18	2.0	19	94	5	67	43	8	16	32	1.77
19368460--19368595	66	2.1	66	84	5	177	43	7	13	36	1.72
19368597--19368629	18	1.9	17	88	11	50	48	3	6	42	1.43
19368560--19369620	180	5.9	181	76	6	895	39	8	9	42	1.69
19369482--19369536	19	3.1	19	69	15	53	40	5	14	40	1.69
19368537--19369632	359	3.1	355	78	4	992	39	8	10	42	1.70
19369629--19370600	177	5.5	178	76	8	752	41	11	8	39	1.70
19370868--19370922	18	3.0	18	91	2	92	34	14	7	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19372208--19372257	17	2.8	19	67	14	52	40	6	10	44	1.63
19371589--19372701	180	6.2	181	79	5	1058	41	8	8	40	1.67
19373287--19374125	180	4.8	181	72	12	468	43	9	7	40	1.65
19376179--19376942	179	4.3	179	74	8	497	39	9	9	41	1.70
19376950--19377745	180	4.4	180	80	5	815	39	7	10	42	1.67
19376948--19377745	360	2.2	359	82	4	987	39	7	10	42	1.67
19379279--19379327	17	2.9	17	87	0	62	38	22	14	24	1.91
19383473--19384145	336	2.0	336	95	0	1213	29	21	27	21	1.99
19387366--19387468	45	2.3	46	88	3	147	27	25	27	20	1.99
19398331--19398374	23	1.9	23	85	0	61	22	25	31	20	1.98
19398391--19398485	45	2.0	48	82	6	115	27	15	28	28	1.96
19408733--19408818	3	29.0	3	76	15	63	26	0	3	69	1.04
19408733--19408813	28	2.9	29	85	5	112	25	0	3	70	1.04
19409627--19409686	19	3.2	19	83	2	68	13	5	6	75	1.18
19413700--19414506	180	4.5	181	81	5	871	41	10	7	40	1.68
19413715--19414496	361	2.2	358	83	3	978	42	10	7	39	1.68
19414504--19415265	177	4.3	172	75	10	567	41	9	9	39	1.70
19415138--19415404	146	1.8	147	81	2	331	42	7	8	40	1.65
19414952--19415587	320	2.0	320	80	5	724	40	8	9	41	1.67
19417315--19418165	179	4.8	179	76	9	681	40	7	10	41	1.67
19418769--19420346	180	8.7	179	73	8	954	41	9	9	39	1.69
19420545--19420580	18	2.0	18	94	0	63	41	8	16	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19420357--19421955	178	9.0	178	73	10	1054	38	9	11	41	1.72
19423194--19423230	18	2.0	19	94	5	67	32	16	8	43	1.77
19423423--19425004	180	8.8	181	76	5	1211	39	9	9	41	1.70
19423430--19425004	361	4.4	360	77	6	1325	39	9	9	41	1.70
19424515--19424564	17	2.8	19	67	14	52	40	6	10	44	1.63
19423533--19424835	722	1.8	721	81	5	1646	40	9	8	41	1.68
19423533--19425009	722	2.0	721	80	5	1615	40	9	8	41	1.69
19425598--19426448	180	4.8	178	76	8	722	41	9	7	40	1.67
19425672--19426439	348	2.2	349	79	9	797	43	9	7	39	1.66
19428366--19428629	143	1.8	144	81	2	334	40	8	7	43	1.64
19428185--19428816	318	2.0	321	80	6	717	41	9	7	41	1.66
19428507--19429266	179	4.3	178	76	8	620	40	9	8	41	1.68
19429021--19429062	18	2.4	18	84	15	61	38	9	7	45	1.64
19429264--19430068	180	4.5	180	80	5	838	40	7	10	41	1.67
19433437--19433525	45	2.0	45	90	0	142	26	23	28	21	1.99
19433441--19433554	45	2.5	45	85	0	138	25	24	28	21	1.99
19443288--19444113	411	2.0	408	87	1	1188	31	20	22	24	1.98
19455263--19455329	3	24.0	3	75	17	56	31	0	1	67	1.00
19455261--19455329	26	2.5	28	88	9	106	30	0	1	68	0.99
19455261--19455324	23	2.6	25	87	9	87	29	0	1	68	0.99
19455768--19455880	51	2.3	51	83	10	153	28	12	23	36	1.91
19455772--19455898	51	2.5	51	83	5	134	25	10	23	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19456168--19456206	19	2.1	19	85	0	51	17	5	7	69	1.32
19456265--19456341	11	6.7	11	69	19	50	71	2	5	20	1.18
19456639--19456681	10	4.3	10	82	8	52	74	2	2	20	1.04
19456701--19456734	15	2.3	15	100	0	68	70	5	0	23	1.09
19468656--19468975	38	8.3	38	82	3	363	25	10	21	42	1.84
19468656--19468975	117	2.8	114	85	4	417	25	10	21	42	1.84
19469156--19469207	3	17.7	3	80	11	63	30	1	0	67	1.02
19469142--19469197	29	1.9	29	88	0	85	26	1	1	69	1.08
19470003--19470060	25	2.3	24	80	19	57	15	1	6	75	1.09
19474070--19478709	181	26.2	180	73	10	2436	41	10	8	39	1.69
19474070--19475942	704	2.6	701	77	7	1596	41	10	8	39	1.70
19474247--19476669	358	6.9	346	73	10	1163	41	10	8	40	1.69
19475316--19478513	360	9.1	350	71	13	1135	41	10	8	40	1.69
19474115--19478751	545	8.7	537	72	11	2414	41	10	8	39	1.69
19477077--19477436	159	2.3	161	77	10	366	42	8	8	40	1.66
19477297--19478702	182	7.8	181	76	8	859	41	9	8	40	1.68
19477297--19478751	363	4.0	356	77	6	1156	41	9	8	40	1.68
19478829--19479395	311	1.8	309	82	4	739	41	11	7	38	1.70
19479089--19480095	556	1.8	557	80	7	1213	42	9	8	39	1.69
19480008--19480296	154	1.9	153	85	5	404	40	9	6	42	1.64
19480162--19481068	180	5.0	180	75	8	723	41	10	7	41	1.66
19481335--19483283	182	10.9	179	74	8	1174	42	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19481335--19482503	541	2.2	532	81	5	1295	42	9	8	39	1.68
19481338--19482824	362	4.2	356	78	6	1133	42	9	8	39	1.67
19492669--19492989	38	8.3	38	82	3	372	25	9	21	42	1.84
19492669--19492984	77	4.1	77	84	3	368	25	10	21	42	1.84
19493169--19493220	3	17.7	3	80	11	63	30	1	0	67	1.02
19493155--19493210	29	1.9	29	88	0	85	26	1	1	69	1.08
19494470--19494500	10	3.0	10	95	4	53	77	3	0	19	0.90
19497216--19497242	9	3.0	9	100	0	54	33	11	11	44	1.75
19522914--19523182	58	4.6	58	86	6	373	36	15	8	39	1.79
19523227--19523284	6	9.7	6	75	14	57	81	1	5	12	0.94
19523222--19523283	11	5.8	11	77	11	58	80	3	4	11	0.98
19523307--19523351	4	11.8	4	85	4	58	75	2	0	22	0.91
19524345--19524391	11	4.3	12	77	22	50	82	0	0	17	0.66
19524346--19524421	6	12.7	6	76	15	77	80	1	1	17	0.85
19524346--19524421	24	3.2	23	83	12	100	80	1	1	17	0.85
19524354--19524438	42	2.1	42	78	12	97	76	1	4	17	1.02
19524322--19524436	20	5.3	21	75	15	85	78	0	6	14	0.99
19532875--19532933	27	2.2	27	87	6	84	10	30	16	42	1.82
19543570--19543608	20	2.0	20	94	0	69	28	2	20	48	1.62
19546319--19546366	17	2.7	19	78	15	57	43	6	6	43	1.54
19545111--19548496	177	19.0	173	75	9	2116	40	10	8	39	1.71
19545111--19548490	353	9.5	351	75	8	2420	40	10	8	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19545301--19548427	530	5.9	528	78	7	1972	41	10	8	39	1.71
19549090--19565017	181	88.3	180	70	12	5106	41	9	8	40	1.68
19549745--19549788	23	1.9	23	85	0	61	50	4	4	40	1.43
19548497--19565471	539	31.4	539	71	12	6340	41	9	8	40	1.68
19555366--19555398	15	2.3	15	89	5	50	72	0	0	27	0.85
19554338--19565472	536	20.6	531	71	13	3001	41	9	8	40	1.68
19557494--19557822	177	1.8	180	85	5	463	43	10	7	39	1.67
19556721--19565465	720	12.3	716	74	10	5636	41	9	8	40	1.68
19561972--19562471	179	2.8	179	79	8	437	41	9	8	40	1.68
19563391--19563423	17	2.0	17	88	5	50	39	12	0	48	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125