genome.fa.s46.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  110  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21039653--21039705	26	2.0	26	96	0	97	26	24	20	28	1.99
21041106--21041408	159	1.9	158	81	4	360	21	26	29	22	1.99
21041410--21041752	159	2.2	158	83	1	418	21	23	28	26	1.99
21048334--21048834	159	3.2	157	76	5	499	24	30	25	19	1.98
21048808--21048860	26	2.0	26	92	0	88	26	20	26	26	1.99
21050398--21050453	26	2.2	26	93	6	96	28	19	23	28	1.98
21050899--21050951	26	2.0	26	89	7	81	28	20	24	26	1.99
21051584--21051636	26	2.0	26	92	0	88	24	18	28	28	1.98
21052542--21053076	159	3.4	159	75	7	435	23	28	26	21	1.99
21054121--21054561	159	2.8	159	78	5	473	24	29	28	18	1.98
21054598--21054650	26	2.0	26	85	7	72	26	16	28	28	1.97
21054795--21055162	185	2.0	185	83	2	472	23	29	25	21	1.99
21055543--21055621	38	2.1	38	95	0	140	30	24	37	7	1.83
21056241--21057560	159	8.2	160	71	12	438	24	28	25	21	1.99
21056241--21056830	317	1.9	317	80	3	704	25	27	26	20	1.99
21057534--21057586	26	2.0	26	89	7	81	24	16	26	32	1.97
21058256--21058308	26	2.0	26	92	7	90	28	20	24	26	1.99
21060152--21060549	159	2.5	158	77	4	388	21	30	27	20	1.98
21060556--21060608	26	2.0	26	92	0	88	28	18	26	26	1.98
21060777--21060829	26	2.0	26	88	0	79	30	18	24	26	1.98
21061497--21061549	26	2.0	26	92	7	90	26	24	20	28	1.99
21062939--21062994	26	2.2	26	90	0	85	30	28	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21062650--21063132	184	2.6	183	78	6	526	22	27	26	23	1.99
21063199--21063554	196	1.8	196	84	6	497	19	23	30	26	1.98
21063823--21063875	26	2.0	26	89	7	81	28	22	20	28	1.99
21064544--21064596	26	2.0	26	92	0	88	28	24	18	28	1.98
21065212--21065264	26	2.0	26	88	0	79	30	28	15	26	1.96
21065238--21065739	158	3.2	157	78	3	551	20	26	29	23	1.99
21065713--21065765	26	2.0	26	85	7	72	30	24	16	28	1.97
21065907--21065959	26	2.0	26	85	7	72	26	26	18	28	1.98
21066250--21066301	26	2.0	25	88	3	77	26	23	21	28	1.99
21066969--21067021	26	2.0	26	85	0	70	26	24	22	26	2.00
21067311--21067363	26	2.0	26	89	7	81	26	22	20	30	1.98
21068041--21068098	26	2.2	26	90	3	89	27	27	18	25	1.98
21069077--21069145	26	2.7	26	86	0	93	27	23	17	31	1.97
21070036--21070088	26	2.0	26	92	0	88	24	24	20	30	1.99
21070758--21070810	26	2.0	26	85	7	72	33	20	16	28	1.95
21071210--21071262	26	2.0	26	89	7	81	28	24	18	28	1.98
21071403--21071455	26	2.0	26	82	13	65	32	26	15	26	1.95
21071902--21071954	26	2.0	26	89	7	81	32	24	15	28	1.95
21072100--21072151	25	2.0	26	88	3	79	28	28	19	23	1.98
21072181--21072783	159	3.8	160	78	4	483	18	26	30	24	1.98
21072609--21073166	197	3.0	184	77	11	545	21	26	29	22	1.99
21072955--21073007	26	2.0	26	88	0	79	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21071511--21073324	856	2.1	857	81	2	2059	20	26	29	23	1.99
21073987--21074039	26	2.0	26	85	7	72	28	28	15	28	1.96
21074013--21074989	158	6.2	158	74	7	521	21	25	28	24	1.99
21074552--21074991	159	2.8	158	78	7	410	20	26	28	23	1.99
21074010--21074989	475	2.1	474	80	5	1077	22	25	28	24	1.99
21074963--21075015	26	2.0	26	85	7	72	28	20	18	32	1.97
21076198--21076250	26	2.0	26	85	7	72	28	22	18	30	1.98
21076880--21076930	26	2.0	26	88	7	77	29	17	23	29	1.97
21077256--21077308	26	2.0	26	92	7	90	28	20	24	26	1.99
21078452--21078504	26	2.0	26	88	0	79	26	18	26	28	1.98
21078661--21078713	26	2.0	26	89	7	81	33	18	18	28	1.95
21077231--21079253	710	2.9	692	80	5	2152	23	28	26	22	1.99
21078686--21079049	158	2.3	157	79	4	374	22	27	26	22	1.99
21079895--21079947	26	2.0	26	92	0	88	30	22	24	22	1.99
21080238--21080290	26	2.0	26	92	0	88	26	20	26	26	1.99
21080435--21080487	26	2.0	26	100	0	106	30	20	22	26	1.98
21080934--21080986	26	2.0	26	88	0	79	28	20	24	26	1.99
21081131--21081182	25	2.0	26	85	10	72	30	21	23	25	1.99
21082355--21082698	158	2.2	158	79	2	350	24	30	26	18	1.98
21082672--21082724	26	2.0	26	92	0	88	26	20	26	26	1.99
21083541--21083593	26	2.0	26	85	7	72	30	20	20	28	1.98
21083567--21084069	159	3.2	158	74	9	387	23	28	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21084043--21084095	26	2.0	26	89	7	81	22	16	28	32	1.96
21085081--21085133	26	2.0	26	85	7	72	26	16	26	30	1.97
21085276--21085328	26	2.0	26	89	7	81	28	18	24	28	1.98
21085777--21085829	26	2.0	26	88	0	79	30	18	22	28	1.98
21085993--21086043	26	2.0	26	88	3	77	25	17	27	29	1.98
21085774--21086203	215	2.0	216	87	1	621	27	19	25	26	1.99
21086716--21086766	26	2.0	26	92	7	86	31	15	23	29	1.95
21087401--21087453	26	2.0	26	96	0	97	24	20	26	28	1.99
21086714--21087527	343	2.4	343	82	2	1003	24	29	27	18	1.98
21088465--21088517	26	2.0	26	85	0	70	24	18	28	28	1.98
21088661--21088713	26	2.0	26	85	7	72	28	16	24	30	1.97
21090198--21090250	26	2.0	26	85	0	70	28	18	24	28	1.98
21091618--21091670	26	2.0	26	92	7	90	30	20	22	26	1.98
21092685--21092737	26	2.0	26	92	7	90	28	20	24	26	1.99
21093383--21093435	26	2.0	26	85	7	72	30	22	22	24	1.99
21093886--21093938	26	2.0	26	85	7	72	32	20	20	26	1.98
21093911--21094203	158	1.9	158	80	4	349	26	28	26	18	1.98
21094228--21094280	26	2.0	26	88	0	79	24	16	28	30	1.97
21094425--21094480	26	2.2	26	93	0	94	28	21	23	26	1.99
21094610--21094662	26	2.0	26	92	7	90	28	20	24	26	1.99
21094421--21094761	185	1.8	185	84	2	461	26	25	26	21	2.00
21094425--21094821	185	2.1	185	81	3	442	25	26	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21095569--21095619	26	2.0	26	100	0	102	31	19	21	27	1.97
21094921--21095705	407	1.9	406	81	3	952	24	26	26	22	2.00
21094794--21095725	406	2.3	400	78	5	994	24	26	26	22	2.00
21096360--21096412	26	2.0	26	89	7	81	32	20	22	24	1.98
21097414--21097466	26	2.0	26	88	0	79	26	18	26	28	1.98
21097071--21097903	343	2.4	342	79	5	862	23	28	27	20	1.99
21098862--21098912	26	2.0	26	92	3	86	25	19	25	29	1.99
21098130--21099770	711	2.3	711	79	6	1656	24	28	25	21	1.99
21099561--21099612	26	2.0	26	85	7	70	30	15	23	30	1.95
21099744--21099796	26	2.0	26	85	0	70	26	18	26	28	1.98
21099204--21099857	184	3.5	184	75	10	448	26	27	25	20	1.99
21100245--21100297	26	2.0	26	92	0	88	24	18	28	28	1.98
21100822--21100874	26	2.0	26	85	0	70	26	20	24	28	1.99
21100377--21101241	393	2.2	393	83	2	1056	24	27	26	22	2.00
21102242--21102294	26	2.0	26	88	0	79	26	18	26	28	1.98
21102440--21102490	26	2.0	26	92	0	84	27	13	29	29	1.94
21102649--21102701	26	2.0	26	88	0	79	26	18	26	28	1.98
21102869--21103249	156	2.4	156	76	5	372	25	28	26	19	1.99
21103343--21103395	26	2.0	26	96	0	97	24	20	28	26	1.99
21104064--21104116	26	2.0	26	85	7	72	28	20	24	26	1.99
21104406--21104458	26	2.0	26	88	0	79	24	22	26	26	2.00
21104797--21104849	26	2.0	26	89	7	81	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21104374--21104921	195	2.8	194	80	5	613	25	28	24	22	1.99
21104960--21105001	21	2.0	21	95	0	75	14	42	21	21	1.88
21105465--21105516	26	2.0	25	89	10	79	25	19	26	28	1.98
21106527--21106577	26	2.0	26	84	7	68	29	19	21	29	1.98
21106553--21107054	158	3.2	158	75	6	449	24	30	25	19	1.98
21107028--21107078	26	2.0	26	96	0	93	29	19	23	27	1.98
21107237--21107292	26	2.2	26	83	6	69	28	17	21	32	1.96
21106122--21107809	710	2.4	693	81	4	1803	24	29	25	21	1.99
21108776--21108828	26	2.0	26	88	0	79	28	20	24	26	1.99
21109389--21109418	12	2.5	12	94	0	51	16	46	16	20	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125