genome.fa.s46.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  58  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11484342--11484394	19	2.8	19	76	0	52	16	7	30	45	1.75
11484430--11484508	19	4.1	19	73	1	68	21	3	30	44	1.70
11484485--11484509	12	2.1	12	100	0	50	16	0	36	48	1.46
11485799--11485865	4	17.8	4	75	17	54	2	16	1	79	0.94
11485788--11485861	26	2.8	28	80	14	84	4	13	1	81	0.91
11485795--11485865	24	3.0	24	82	11	83	2	15	1	80	0.90
11485788--11485865	28	2.8	26	80	9	84	3	14	1	80	0.91
11485788--11485865	32	2.5	31	82	13	90	3	14	1	80	0.91
11498448--11498481	14	2.4	14	95	0	59	85	2	0	11	0.71
11506598--11506730	66	2.0	66	84	5	171	36	6	26	31	1.81
11508361--11508416	25	2.3	24	85	11	78	53	1	5	39	1.34
11508603--11508680	16	5.5	14	74	20	65	47	1	1	50	1.17
11508562--11508653	24	3.6	24	73	12	85	42	1	4	52	1.28
11508602--11508680	28	2.9	28	81	7	99	46	1	1	50	1.17
11508614--11508667	12	4.1	12	78	17	54	48	0	1	50	1.11
11508644--11508680	13	2.8	13	91	4	56	51	2	0	45	1.15
11509082--11509166	29	2.9	29	84	6	75	54	2	1	42	1.21
11511069--11511120	21	2.6	20	74	14	54	71	0	1	26	0.97
11510877--11511260	213	1.8	213	83	8	505	44	7	14	33	1.73
11511300--11511331	12	2.7	12	95	0	55	68	0	3	28	1.04
11511386--11511964	192	3.0	193	96	1	1063	36	12	14	36	1.84
11513256--11513301	21	2.2	21	92	3	76	58	2	4	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11514215--11514273	22	2.7	22	82	10	68	59	0	0	40	0.97
11514699--11514736	15	2.5	15	86	4	58	42	0	0	57	0.98
11516477--11516537	22	2.8	22	70	9	61	44	1	0	54	1.10
11516573--11516617	20	2.2	20	88	0	63	44	0	4	51	1.21
11521318--11521363	22	2.0	23	83	12	58	41	6	2	50	1.40
11528181--11528221	21	2.0	21	95	0	73	36	31	9	21	1.86
11540551--11540608	3	19.3	3	100	0	116	32	0	0	67	0.91
11540774--11540813	21	2.0	20	85	5	53	82	0	12	5	0.82
11540755--11540826	17	4.4	16	73	20	60	79	2	15	2	0.97
11541673--11541734	26	2.3	27	83	2	72	64	3	14	17	1.41
11542341--11542401	23	2.7	23	80	16	65	57	3	13	26	1.51
11542674--11542787	22	5.1	22	77	13	108	36	18	8	35	1.82
11542686--11542833	44	3.3	45	76	10	144	35	16	10	37	1.84
11542738--11542876	22	6.2	22	75	10	77	35	14	12	38	1.83
11542945--11542998	22	2.5	22	84	6	65	33	20	11	35	1.88
11543149--11543242	18	5.3	18	74	11	68	78	11	2	7	1.03
11543159--11543207	25	2.0	24	84	15	64	75	14	2	8	1.12
11543180--11543217	20	1.9	19	89	5	58	76	7	5	10	1.15
11543179--11543245	20	3.4	18	77	18	55	80	10	2	5	0.99
11543177--11543296	45	2.8	44	78	15	124	76	10	5	7	1.14
11543226--11543289	28	2.2	31	83	8	80	76	10	6	6	1.14
11543746--11543787	18	2.3	18	88	12	59	76	9	7	7	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544936--11544973	19	2.0	19	85	10	51	44	0	7	47	1.32
11546631--11546662	10	3.4	10	91	8	50	37	0	6	56	1.25
11549050--11549087	10	4.1	9	83	16	51	65	0	0	34	0.93
11549051--11549089	18	2.1	19	90	9	62	66	0	0	33	0.92
11550279--11550312	16	2.3	15	90	10	52	70	2	0	26	1.01
11551489--11551538	20	2.5	20	93	6	84	52	2	0	46	1.12
11551806--11551835	13	2.2	14	94	5	53	56	0	3	40	1.16
11551845--11551960	54	2.2	53	80	10	121	41	1	0	56	1.09
11551864--11551934	24	3.0	23	82	11	74	40	1	0	57	1.07
11551912--11551949	13	2.9	14	88	7	53	34	5	0	60	1.19
11556897--11556944	22	2.3	20	86	13	62	2	12	4	81	0.93
11557994--11558045	24	2.1	25	92	3	88	42	23	7	26	1.81
11564309--11564349	2	21.5	2	85	9	59	53	0	0	46	1.00
11564671--11564850	69	2.6	70	78	7	195	46	13	12	27	1.79
11575303--11575339	19	1.9	19	100	0	74	32	8	16	43	1.77
11578978--11579009	16	2.0	16	93	0	55	78	6	15	0	0.95
11586985--11587063	28	2.8	28	73	5	77	43	5	15	36	1.69
11588253--11588343	42	2.2	42	82	4	112	45	14	7	32	1.73
11588411--11588438	2	14.0	2	100	0	56	50	0	0	50	1.00
11590101--11590139	16	2.4	16	83	8	53	71	10	0	17	1.12
11603692--11604566	119	7.4	118	76	5	570	20	21	14	43	1.87
11605747--11605780	17	1.9	18	88	5	52	14	11	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11605745--11605808	8	7.5	8	76	13	65	14	10	0	75	1.06
11605749--11605806	27	2.1	27	87	9	82	12	8	0	79	0.94
11609726--11609849	61	2.0	61	82	3	151	24	10	8	56	1.61
11612528--11612568	18	2.2	19	83	12	50	75	7	4	12	1.16
11612535--11612610	12	6.2	12	72	17	59	73	11	2	11	1.19
11612518--11612596	29	2.7	30	83	9	101	75	8	3	11	1.15
11612602--11612640	15	2.7	14	84	7	51	74	0	7	17	1.05
11623999--11624054	28	1.9	30	82	7	71	41	10	1	46	1.49
11626793--11626825	15	2.2	15	89	10	50	3	9	0	87	0.63
11631566--11631657	45	2.0	46	91	2	150	32	11	27	28	1.92
11644965--11645224	126	2.1	126	79	3	272	32	14	15	38	1.87
11645347--11645402	22	2.5	22	77	11	69	37	14	17	30	1.90
11645121--11645444	142	2.2	142	82	5	364	35	14	15	34	1.87
11645599--11645664	33	2.0	33	87	0	96	39	21	12	27	1.88
11645800--11645881	34	2.4	34	97	0	155	40	17	13	29	1.87
11646042--11646088	25	1.9	25	82	4	60	40	10	6	42	1.65
11646979--11648121	162	7.1	161	71	13	615	43	14	9	32	1.78
11647284--11647323	19	2.1	19	90	0	62	37	15	15	32	1.88
11647132--11647469	181	1.9	181	84	6	461	42	14	11	31	1.81
11653727--11653770	23	1.9	23	90	0	70	27	13	25	34	1.93
11653731--11653791	22	2.7	23	82	2	61	27	14	26	31	1.95
11653781--11653946	22	7.5	22	68	11	88	24	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11653756--11653946	89	2.2	88	80	6	217	24	18	25	31	1.97
11653829--11653946	44	2.7	45	73	16	120	24	17	26	31	1.97
11656019--11656445	133	3.3	130	76	9	316	22	16	9	51	1.72
11656482--11656549	16	4.0	16	74	11	55	1	13	2	82	0.86
11656490--11656550	28	2.2	27	85	2	86	3	13	3	80	0.96
11662794--11662818	13	1.9	13	100	0	50	24	0	4	72	1.02
11662851--11662889	18	2.2	19	90	9	64	84	0	10	5	0.76
11663462--11663527	32	2.1	32	85	5	89	31	6	7	54	1.53
11663474--11663528	16	3.4	16	79	2	65	29	5	10	54	1.57
11663455--11663523	16	3.8	20	68	28	55	31	7	8	52	1.60
11663516--11663556	21	2.0	21	90	0	64	31	2	12	53	1.51
11663586--11663723	56	2.5	56	83	3	165	31	4	8	55	1.50
11663673--11663760	21	4.3	21	73	11	76	34	7	10	47	1.67
11663662--11663760	41	2.5	40	83	1	126	33	7	10	49	1.63
11663662--11663760	21	4.9	19	71	11	72	33	7	10	49	1.63
11664022--11664458	213	2.1	213	99	0	858	34	7	13	44	1.72
11665995--11666069	36	2.1	36	94	0	132	33	21	14	30	1.93
11667343--11667381	14	2.8	14	92	0	60	79	5	0	15	0.90
11672803--11672871	28	2.8	24	80	18	86	53	0	1	44	1.09
11672810--11672862	28	1.9	27	96	3	97	52	0	0	47	1.00
11675845--11675898	25	2.2	25	83	6	76	51	20	5	22	1.67
11677920--11677945	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11685356--11685605	36	6.9	36	74	11	183	26	14	7	50	1.70
11685356--11685676	36	8.9	36	71	13	175	26	14	6	52	1.66
11685498--11685696	37	5.5	36	75	13	151	24	13	6	56	1.60
11685452--11685702	107	2.3	107	78	8	260	25	13	6	53	1.64
11685687--11685962	101	2.9	94	76	8	268	26	16	5	51	1.66
11685682--11685970	48	6.0	47	75	14	248	25	16	5	52	1.65
11685690--11685986	94	3.1	94	76	11	228	24	16	5	53	1.64
11686685--11687320	321	2.0	322	96	0	1166	35	14	13	35	1.86
11689085--11689118	2	17.0	2	93	0	59	50	0	2	47	1.16
11695517--11695782	136	2.0	134	87	3	390	36	14	12	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125