genome.fa.s46.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  53  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10575753--10575827	34	2.2	34	78	4	80	41	12	13	33	1.81
10576946--10577004	21	2.8	22	76	7	68	52	3	3	40	1.35
10576989--10577039	17	2.7	19	82	11	61	62	3	1	31	1.24
10577169--10577228	19	3.3	19	75	17	65	66	3	3	26	1.23
10577170--10577227	18	3.3	18	75	18	59	65	3	3	27	1.25
10579224--10579257	17	2.1	17	88	5	52	64	2	0	32	1.08
10579392--10579501	51	2.1	54	86	10	156	62	0	8	28	1.29
10592518--10592569	21	2.4	22	78	12	63	38	0	0	61	0.96
10592518--10592584	30	2.3	30	84	7	84	32	0	1	65	1.02
10592505--10592568	23	2.8	23	79	13	69	39	0	1	59	1.07
10592534--10592578	23	2.0	23	82	8	56	33	0	2	64	1.06
10594151--10594218	29	2.3	28	80	7	73	51	0	2	45	1.16
10594184--10594251	27	2.5	28	73	4	68	47	1	1	50	1.19
10594273--10594315	22	2.0	21	82	13	52	58	0	0	41	0.98
10594276--10594355	31	2.6	30	84	9	99	52	0	0	47	1.00
10594275--10594345	19	3.7	19	75	17	67	54	0	0	45	0.99
10594283--10594350	12	6.0	12	71	23	58	52	0	0	47	1.00
10594866--10594928	31	2.1	28	80	16	74	44	1	1	52	1.20
10595303--10595327	7	3.6	7	100	0	50	52	0	0	48	1.00
10602570--10602613	21	2.1	21	82	0	52	20	22	11	45	1.83
10603329--10603631	160	1.9	160	83	5	398	43	13	9	33	1.76
10606768--10606812	21	2.2	20	92	4	72	75	0	15	8	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10611164--10611236	31	2.3	33	83	4	87	52	0	0	47	1.00
10620096--10620148	23	2.2	24	83	6	63	1	15	3	79	0.96
10625740--10625805	28	2.2	28	86	7	87	46	0	1	51	1.10
10626224--10626255	9	3.4	9	91	8	55	71	0	0	28	0.86
10626347--10626401	19	2.8	18	77	17	56	69	7	0	23	1.14
10626571--10626761	101	1.9	101	90	4	305	32	2	8	56	1.43
10626782--10626831	22	2.2	22	82	10	66	38	4	4	54	1.38
10626782--10626831	23	2.2	21	83	13	64	38	4	4	54	1.38
10640681--10640710	2	15.0	2	100	0	60	50	0	0	50	1.00
10640713--10640738	2	13.0	2	100	0	52	50	0	50	0	1.00
10641309--10641385	30	2.5	30	83	6	84	31	2	3	62	1.27
10641337--10641387	14	3.5	14	75	19	59	33	1	0	64	1.05
10641336--10641381	16	3.0	16	73	20	53	36	2	0	60	1.09
10644534--10644561	4	7.0	4	100	0	56	50	0	0	50	1.00
10646185--10646222	14	2.6	15	91	8	69	39	5	0	55	1.23
10647202--10647268	13	4.9	13	73	12	55	77	8	11	1	1.05
10647210--10647238	12	2.3	13	94	5	51	82	3	13	0	0.79
10647204--10647258	19	2.8	20	78	13	60	78	9	10	1	1.05
10650932--10650970	4	9.8	4	82	0	51	23	0	7	69	1.14
10651489--10651860	106	3.5	102	74	11	268	44	8	6	40	1.63
10659597--10659736	45	3.1	44	86	2	181	32	16	14	37	1.89
10666637--10666682	20	2.4	19	86	10	67	28	4	2	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10667590--10667614	2	12.5	2	100	0	50	52	0	0	48	1.00
10671897--10671943	23	2.0	23	87	0	67	36	31	0	31	1.58
10673234--10673289	26	2.2	26	93	0	94	51	3	1	42	1.29
10674189--10674466	141	2.0	141	95	0	502	32	17	11	38	1.86
10678653--10678707	23	2.3	24	78	3	67	29	14	7	49	1.70
10679543--10679650	39	2.8	41	73	17	104	49	0	2	47	1.22
10680590--10680637	25	1.9	25	86	0	69	62	20	0	16	1.33
10680596--10680721	59	2.2	59	85	7	177	56	20	3	19	1.56
10681936--10681980	12	3.6	12	77	11	54	44	8	13	33	1.75
10681983--10682025	14	2.9	15	75	6	52	65	23	0	11	1.25
10682595--10682631	16	2.2	17	86	13	51	48	2	2	45	1.30
10685032--10685062	12	2.7	12	95	5	55	51	19	6	22	1.69
10685044--10685563	262	1.9	271	86	5	745	43	5	7	43	1.56
10685709--10685765	20	2.7	23	71	23	61	40	12	12	35	1.80
10685723--10685765	20	2.2	20	95	0	77	41	11	11	34	1.78
10686068--10686101	10	3.4	10	95	0	59	73	0	0	26	0.83
10686574--10686598	2	12.5	2	100	0	50	52	0	0	48	1.00
10688493--10688532	20	2.0	21	85	14	57	30	7	0	62	1.23
10689523--10689578	27	2.1	27	83	6	69	44	0	0	55	0.99
10698917--10698980	31	2.1	31	96	0	119	39	23	12	25	1.90
10701991--10702043	6	8.7	6	82	12	63	39	11	0	49	1.39
10701980--10702043	18	3.6	19	83	10	82	39	10	0	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10701997--10702045	25	2.0	25	88	8	73	40	10	0	48	1.37
10702101--10702130	15	2.0	15	100	0	60	53	6	20	20	1.67
10709844--10709880	17	2.2	17	90	0	56	48	0	5	45	1.25
10718816--10718848	15	2.1	16	88	5	50	54	0	0	45	0.99
10720645--10720687	14	3.0	14	82	3	50	39	2	2	55	1.25
10722898--10722956	22	2.5	24	78	15	70	38	0	0	61	0.96
10722889--10722940	27	1.9	27	84	7	70	36	0	0	63	0.95
10723476--10723524	19	2.5	19	86	6	62	63	0	4	32	1.13
10723952--10724014	28	2.3	28	81	8	67	53	3	0	42	1.16
10731510--10731552	2	21.5	2	100	0	86	51	0	0	48	1.00
10731552--10731751	109	1.9	107	82	2	256	49	5	4	42	1.43
10733450--10733492	17	2.4	19	88	7	63	72	2	6	18	1.19
10734587--10734619	14	2.3	15	89	5	50	60	0	0	39	0.97
10738804--10738864	21	2.9	22	78	9	65	49	8	6	36	1.59
10738874--10738914	21	2.0	21	90	0	64	43	12	12	31	1.79
10738921--10738989	20	3.3	20	72	18	61	47	13	4	34	1.62
10740800--10740940	62	2.2	63	78	3	140	30	9	20	39	1.85
10740684--10741505	304	2.7	303	87	2	1130	33	12	15	37	1.86
10744904--10745151	80	3.1	79	84	3	302	43	25	8	22	1.81
10755093--10755547	134	3.4	134	82	2	495	37	20	14	27	1.91
10755446--10755509	33	1.9	33	87	6	94	32	23	18	25	1.97
10763306--10763357	3	17.3	3	100	0	104	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10763740--10763776	14	2.5	15	83	16	51	70	0	2	27	1.01
10764679--10764734	3	18.7	3	100	0	112	33	0	0	66	0.92
10776978--10777566	109	5.4	109	74	12	432	35	9	6	47	1.62
10776978--10777566	55	10.8	54	76	9	455	35	9	6	47	1.62
10777222--10777310	25	3.5	24	69	19	63	31	6	5	56	1.49
10778527--10778568	10	4.3	10	78	6	50	76	11	0	11	1.03
10778645--10778677	3	11.0	3	100	0	66	66	0	0	33	0.92
10779525--10779785	126	2.1	126	91	0	423	34	16	19	28	1.94
10780690--10780727	12	3.2	12	100	0	76	50	0	31	18	1.47
10788641--10788666	3	8.7	3	100	0	52	65	0	0	34	0.93
10795151--10795199	22	2.2	22	96	0	89	20	18	4	57	1.57
10800486--10800578	42	2.2	41	82	17	104	43	2	1	53	1.19
10800681--10800715	17	2.1	17	88	0	52	62	5	0	31	1.18
10806841--10806890	25	2.0	25	96	0	91	36	14	8	42	1.74
10808494--10808548	24	2.3	24	96	0	101	40	9	20	30	1.83
10810362--10810405	21	2.1	21	87	8	63	36	22	11	29	1.89
10812069--10813260	237	5.0	237	79	5	1194	35	10	11	42	1.75
10812069--10813260	476	2.5	473	85	3	1597	35	10	11	42	1.75
10813141--10813384	124	2.0	124	86	0	344	34	11	11	42	1.77
10812932--10813623	363	1.9	360	84	2	929	35	10	11	41	1.77
10813252--10813866	239	2.6	238	81	2	669	35	11	10	41	1.76
10814472--10814525	28	1.9	28	92	0	90	24	3	22	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814469--10814535	28	2.4	28	79	0	89	23	4	25	46	1.71
10814542--10814616	12	6.1	12	82	11	89	21	8	26	44	1.80
10814547--10814618	25	2.9	24	87	8	92	23	8	25	43	1.81
10814542--10814616	37	2.0	37	89	0	114	21	8	26	44	1.80
10814576--10814632	25	2.2	25	81	3	69	24	8	24	42	1.83
10818194--10818462	126	2.1	126	79	6	287	34	13	13	39	1.84
10818414--10818637	115	1.9	115	96	0	412	33	13	12	39	1.83
10818440--10818708	115	2.3	115	85	6	332	34	14	14	36	1.86
10824909--10824974	29	2.2	29	81	7	71	50	1	3	45	1.26
10825168--10825194	12	2.2	12	100	0	54	33	7	14	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125