genome.fa.s46.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  11  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1646087--1646170	24	3.5	24	81	12	93	76	0	14	9	1.02
1646103--1646187	23	3.5	24	82	9	93	76	0	14	9	1.02
1646087--1646191	16	6.6	17	78	11	73	76	0	15	8	1.02
1646875--1647038	63	2.6	63	78	0	175	36	11	23	28	1.90
1647529--1647568	20	2.0	20	90	0	62	37	17	17	27	1.92
1647911--1648048	42	3.4	42	82	6	156	26	10	15	47	1.78
1647866--1648339	81	5.8	80	74	8	302	26	10	17	44	1.82
1647876--1648339	41	11.4	41	75	10	307	26	10	17	45	1.81
1647876--1648333	122	3.8	122	77	8	364	26	10	16	45	1.81
1649418--1649586	50	3.5	48	77	14	177	46	10	13	30	1.75
1649461--1649560	45	2.2	45	85	7	130	51	9	13	27	1.70
1649407--1649586	95	1.9	95	88	6	276	48	9	12	29	1.73
1655841--1655909	36	1.9	36	82	5	86	53	5	7	33	1.52
1661577--1661692	34	3.3	34	68	13	90	39	12	9	37	1.76
1670253--1670282	14	2.1	14	100	0	60	80	0	0	20	0.72
1680520--1680555	18	2.0	18	89	10	56	41	5	5	47	1.50
1680562--1680610	11	4.4	11	78	14	55	48	0	2	48	1.12
1680928--1680957	15	2.0	15	93	0	51	36	6	6	50	1.55
1683913--1683954	22	1.9	22	85	9	59	61	2	2	33	1.21
1683939--1683972	18	1.9	17	88	5	50	58	0	0	41	0.98
1684837--1685072	21	11.5	20	69	18	114	44	1	2	51	1.21
1684837--1684958	11	11.0	11	65	15	54	41	1	2	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684952--1685020	25	2.6	27	80	11	81	47	0	1	50	1.09
1684952--1685018	27	2.5	27	76	13	77	47	0	1	50	1.10
1684877--1685049	18	9.6	18	67	26	75	45	1	1	52	1.15
1685181--1685246	20	3.4	20	72	14	66	40	1	0	57	1.08
1685106--1685310	59	3.4	60	73	16	154	40	3	1	54	1.28
1685268--1685353	38	2.2	40	76	13	90	45	2	2	50	1.27
1685424--1685572	28	5.2	28	73	15	117	47	0	4	48	1.20
1685454--1685508	18	3.1	18	77	15	60	47	0	3	49	1.19
1685544--1685580	18	2.0	19	85	15	51	54	2	0	43	1.14
1685598--1685640	14	2.9	15	80	20	54	44	0	2	53	1.13
1685648--1685679	11	2.9	11	95	0	55	50	0	3	46	1.17
1685695--1685767	24	3.1	23	74	16	69	43	0	0	56	0.99
1685698--1685745	26	1.9	24	83	8	60	41	0	0	58	0.98
1685656--1685776	18	6.8	18	69	18	67	47	0	0	51	1.06
1685991--1686075	37	2.2	39	76	15	88	45	2	2	49	1.27
1686144--1686293	29	5.2	28	72	15	110	47	0	4	48	1.20
1686174--1686228	18	3.1	18	77	15	60	47	0	3	49	1.19
1686319--1686361	14	2.9	15	80	20	54	44	0	2	53	1.13
1684975--1686444	721	2.0	726	97	1	2817	43	1	2	51	1.27
1686369--1686400	11	2.9	11	95	0	55	50	0	3	46	1.17
1686377--1686421	18	2.4	18	82	13	56	53	0	2	44	1.13
1684975--1686662	721	2.3	719	90	5	2266	44	2	3	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689583--1689623	20	2.0	20	85	9	55	43	0	2	53	1.13
1690258--1690292	11	3.2	11	91	0	52	25	0	2	71	1.00
1690464--1690513	19	2.7	20	81	12	61	40	4	0	56	1.18
1693724--1693764	12	3.5	12	83	12	50	68	0	0	31	0.90
1695145--1695199	28	2.0	28	88	0	83	43	7	9	40	1.64
1702933--1702972	16	2.4	16	87	4	53	85	0	7	7	0.76
1703072--1703101	13	2.4	12	89	10	51	83	0	3	13	0.77
1703681--1703719	15	2.5	15	91	4	60	76	0	23	0	0.78
1705501--1705538	19	2.0	19	94	0	67	36	2	10	50	1.51
1709810--1709864	24	2.3	24	82	11	69	61	1	0	36	1.06
1710195--1710228	18	1.9	17	88	5	50	38	2	0	58	1.13
1710219--1710260	20	2.1	20	95	0	75	50	0	0	50	1.00
1712960--1713009	25	2.1	24	89	10	77	46	6	4	44	1.47
1719690--1719727	15	2.6	15	87	4	60	52	5	0	42	1.24
1718896--1720217	660	2.0	663	92	1	2188	44	4	8	41	1.57
1720041--1720089	24	2.0	24	84	7	64	51	2	4	42	1.32
1732953--1732986	10	3.4	10	87	0	50	64	0	14	20	1.28
1746473--1746502	15	2.1	14	93	6	51	40	0	10	50	1.36
1761482--1761782	19	15.3	18	69	16	120	55	5	2	36	1.37
1761493--1761813	39	8.1	38	74	11	207	55	5	2	36	1.37
1761482--1761813	10	33.7	10	70	11	195	55	5	2	36	1.37
1761574--1761647	21	3.7	19	75	10	60	58	4	0	37	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1762140--1762195	28	2.0	28	89	6	87	42	0	3	53	1.18
1762357--1762396	19	2.0	20	90	4	64	40	2	0	57	1.12
1762357--1762450	10	9.5	10	75	10	59	35	2	5	57	1.33
1762404--1762442	20	2.0	19	95	5	69	25	0	12	61	1.31
1762400--1762450	20	2.5	20	84	6	68	27	1	9	60	1.39
1762460--1762513	19	2.8	19	83	10	74	46	0	3	50	1.19
1762460--1762512	20	2.8	20	85	8	74	45	0	3	50	1.19
1762505--1762567	27	2.3	26	82	12	74	28	0	7	63	1.22
1762515--1762656	19	7.5	19	73	13	89	38	0	6	54	1.31
1762513--1762642	10	13.7	10	75	11	73	37	0	5	56	1.28
1762515--1762651	28	4.9	28	72	16	77	37	0	6	55	1.31
1762515--1762641	9	13.6	9	75	10	87	37	0	5	55	1.29
1762563--1762634	28	2.5	29	84	6	85	45	1	2	50	1.25
1762544--1762641	37	2.6	38	77	9	92	39	1	5	54	1.30
1762663--1762716	20	2.7	19	83	8	63	27	5	5	61	1.41
1771427--1771451	2	12.5	2	100	0	50	48	0	0	52	1.00
1778698--1778769	35	2.1	35	97	0	135	38	8	18	34	1.80
1788580--1788617	13	2.9	13	92	7	60	23	2	0	73	0.95
1789371--1789431	26	2.4	25	86	10	79	45	3	0	50	1.17
1790923--1791149	114	2.0	113	93	0	391	23	11	29	35	1.89
1792420--1792482	21	3.0	21	90	0	99	36	33	9	20	1.85
1796846--1796955	51	2.2	51	91	0	175	43	7	22	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1798051--1798084	15	2.3	15	89	0	50	52	5	20	20	1.67
1803304--1804082	391	2.0	390	93	0	1326	29	16	19	34	1.94
1806715--1807043	179	1.8	180	90	2	534	29	16	16	37	1.91
1816748--1816779	3	11.0	3	93	6	57	31	0	0	68	0.90
1819716--1819754	19	2.1	19	90	0	60	74	5	0	20	1.01
1820472--1820522	19	2.5	21	72	18	54	39	21	3	35	1.72
1826206--1826536	105	3.1	105	81	5	357	29	7	12	49	1.68
1826780--1826816	12	3.2	12	88	11	51	32	0	0	67	0.91
1826783--1826856	16	4.9	15	71	17	55	29	0	1	68	0.97
1826778--1826843	12	4.8	14	67	23	50	30	0	0	69	0.88
1826850--1826892	19	2.3	18	81	14	52	51	2	0	46	1.13
1826859--1826895	19	1.9	20	94	5	67	51	0	0	48	1.00
1827570--1827634	27	2.4	28	78	14	75	49	1	0	49	1.10
1835500--1835540	18	2.3	18	91	0	64	19	34	14	31	1.92
1840647--1840757	54	2.1	54	89	0	168	36	15	21	27	1.93
1841950--1841976	13	2.1	13	100	0	54	22	25	0	51	1.48
1849418--1849487	25	2.8	24	79	12	79	55	1	2	40	1.23
1849433--1849487	27	2.1	25	83	6	65	58	1	3	36	1.26
1849573--1849645	20	3.5	20	67	18	60	54	5	9	30	1.55
1849575--1849645	21	3.4	21	65	18	58	54	5	9	29	1.56
1849575--1849735	39	4.1	39	74	9	139	49	6	8	36	1.59
1849574--1849667	41	2.4	39	83	7	127	48	7	9	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849692--1849748	22	2.4	24	83	13	66	56	0	7	36	1.27
1855075--1855125	25	2.0	25	100	0	102	60	11	11	15	1.58
1856611--1856656	24	1.9	24	95	0	83	36	0	6	56	1.25
1856615--1856675	24	2.6	23	82	10	63	37	0	3	59	1.14
1857815--1857849	18	1.9	18	88	11	54	45	14	11	28	1.79
1858868--1858971	44	2.3	46	82	14	128	50	3	1	43	1.31
1859000--1859037	19	2.1	19	90	5	60	44	0	0	55	0.99
1859253--1859411	74	2.2	73	81	3	178	51	8	8	30	1.63
1859280--1859435	73	2.1	74	83	5	192	50	8	8	32	1.63
1859897--1859951	27	2.0	27	92	3	92	63	3	1	30	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125