genome.fa.s46.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  20  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3488941--3488982	22	1.9	22	95	0	75	54	7	7	30	1.54
3489367--3489435	20	3.4	19	70	21	59	46	10	4	39	1.58
3489379--3489438	20	3.0	20	83	11	77	46	10	5	38	1.59
3489414--3489465	27	1.9	27	84	0	68	51	5	1	40	1.37
3497427--3497481	26	2.1	26	89	0	83	60	16	7	16	1.57
3502837--3502878	19	2.2	20	86	4	59	45	16	14	23	1.84
3503309--3503478	85	2.0	85	94	2	297	31	34	8	25	1.85
3504018--3504042	9	2.8	9	100	0	50	80	20	0	0	0.72
3504529--3504556	2	14.0	2	100	0	56	50	0	0	50	1.00
3504944--3504997	23	2.5	22	77	16	58	68	0	5	25	1.11
3505245--3505285	21	1.9	22	90	5	66	65	0	7	26	1.18
3506885--3506940	23	2.4	24	81	6	69	69	7	7	16	1.33
3506898--3506941	23	1.9	23	90	0	70	63	6	6	22	1.43
3510269--3510321	18	3.1	17	78	10	54	83	3	11	1	0.87
3510269--3510321	17	3.3	15	78	17	52	83	3	11	1	0.87
3510896--3510928	16	2.0	17	94	5	59	84	0	0	15	0.61
3512923--3512973	13	3.7	14	82	12	52	25	1	13	58	1.46
3514944--3514994	23	2.3	21	80	12	59	52	5	9	31	1.58
3515045--3515424	41	9.4	40	77	11	294	37	14	11	36	1.82
3515066--3515434	81	4.5	79	73	9	230	38	14	11	36	1.82
3515539--3515577	3	13.0	3	100	0	78	33	0	0	66	0.92
3515576--3515610	3	11.7	3	93	0	61	2	0	28	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3515850--3515963	60	1.9	61	85	5	160	50	13	13	23	1.76
3516806--3516850	22	2.0	23	86	4	65	28	4	0	66	1.11
3518303--3518343	20	2.2	18	87	12	57	80	17	0	2	0.82
3518303--3518343	19	2.2	18	91	8	64	80	17	0	2	0.82
3518719--3518769	18	2.7	19	90	6	86	43	23	11	21	1.85
3524711--3524766	20	2.8	20	78	5	60	50	0	1	48	1.11
3531338--3531404	32	2.1	32	82	0	80	44	1	0	53	1.09
3532478--3532549	34	2.1	34	82	10	85	44	0	2	52	1.15
3540064--3540098	18	1.9	18	88	11	54	45	0	5	48	1.26
3541685--3541718	16	2.1	16	88	0	50	29	2	5	61	1.34
3542990--3543575	304	1.9	305	85	3	813	34	13	13	38	1.85
3546957--3547010	25	2.2	25	89	0	81	44	31	3	20	1.69
3546997--3547245	80	3.1	78	79	5	284	43	22	8	25	1.81
3547916--3547948	17	2.0	17	88	5	50	48	6	12	33	1.65
3548220--3548551	173	1.9	175	82	4	413	37	9	12	40	1.76
3547941--3548834	486	1.9	469	81	5	1094	38	9	12	38	1.76
3548395--3549055	298	2.2	297	85	3	864	37	9	13	39	1.77
3549006--3549132	61	2.0	63	83	8	163	41	8	12	37	1.74
3549612--3550004	201	1.9	202	91	2	646	41	12	12	34	1.80
3570478--3570519	20	2.2	19	86	4	57	40	0	4	54	1.21
3571430--3571507	20	3.8	21	85	11	101	51	10	6	32	1.61
3573303--3573330	11	2.5	11	100	0	56	46	0	7	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3573749--3573784	16	2.3	15	90	4	54	22	0	5	72	1.05
3575039--3575117	34	2.3	35	84	4	115	48	8	5	37	1.57
3576861--3576888	3	9.3	3	100	0	56	0	35	32	32	1.58
3585734--3585759	2	13.0	2	100	0	52	50	0	0	50	1.00
3590717--3590820	21	5.2	20	76	11	90	60	4	0	34	1.18
3590723--3590784	22	2.8	23	80	9	76	59	6	0	33	1.23
3590735--3590821	18	4.4	18	75	15	59	62	4	0	33	1.16
3590721--3590812	30	3.0	31	71	7	82	60	5	0	33	1.19
3590852--3590938	37	2.4	37	83	12	110	54	5	3	36	1.42
3590958--3591001	18	2.4	19	85	11	65	47	4	0	47	1.22
3594114--3594179	8	7.8	8	78	18	71	51	0	0	48	1.00
3594121--3594243	44	2.8	43	78	18	128	55	1	0	42	1.15
3594121--3594235	31	3.9	30	77	16	114	54	1	0	43	1.10
3594240--3594342	34	3.0	35	78	16	92	44	0	1	53	1.11
3594306--3594354	16	3.1	16	72	21	50	46	0	0	53	1.00
3594328--3594369	12	3.6	12	77	6	50	42	0	0	57	0.99
3594290--3594370	30	2.7	31	79	9	87	44	0	0	55	0.99
3595720--3595776	20	2.7	22	84	12	68	47	5	7	40	1.53
3604588--3604744	52	3.0	51	86	3	199	26	22	9	41	1.84
3605044--3605142	25	4.0	24	79	10	94	23	35	7	34	1.82
3624445--3624480	18	2.0	17	89	10	54	44	0	5	50	1.25
3626288--3626364	38	2.0	38	100	0	154	37	23	15	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3627922--3627981	31	1.9	31	86	0	84	43	8	15	33	1.76
3627934--3627994	31	2.0	31	83	0	77	47	11	9	31	1.72
3628030--3628084	19	2.8	19	86	5	74	47	21	7	23	1.76
3630415--3630570	30	5.4	29	70	20	96	21	0	31	46	1.56
3630533--3630719	15	12.3	15	71	18	77	22	0	29	47	1.55
3630623--3630720	16	6.2	16	82	11	87	22	0	26	51	1.49
3630598--3630719	31	3.9	31	80	13	124	21	0	28	50	1.49
3630533--3630719	47	4.1	46	74	11	161	22	0	29	47	1.55
3630635--3630714	7	10.2	8	73	18	71	23	0	26	50	1.50
3630636--3630737	32	3.2	30	82	9	78	25	1	24	48	1.62
3630994--3631070	30	2.5	32	78	16	83	29	6	0	63	1.19
3631077--3631130	22	2.3	23	81	6	65	51	7	1	38	1.41
3632800--3632918	30	4.1	29	72	13	84	23	0	26	48	1.56
3632790--3632950	58	2.8	53	76	17	146	24	0	29	45	1.58
3632911--3632949	15	2.8	13	78	14	51	23	0	28	48	1.51
3632984--3633047	15	4.2	15	76	4	65	17	0	31	51	1.45
3632987--3633047	24	2.7	22	76	5	68	18	0	32	49	1.48
3632983--3633051	31	2.2	31	84	0	84	18	0	30	50	1.47
3633480--3633504	2	12.5	2	100	0	50	52	0	0	48	1.00
3634323--3634347	12	2.1	12	100	0	50	60	8	16	16	1.58
3635198--3635295	51	2.0	50	88	6	146	32	10	13	43	1.77
3635451--3635507	27	2.0	27	86	6	78	33	7	5	54	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3636194--3636218	3	8.3	3	100	0	50	64	0	36	0	0.94
3640973--3641023	22	2.4	21	72	15	52	45	1	0	52	1.12
3641761--3641802	15	2.8	15	82	7	50	66	2	0	30	1.04
3642310--3642350	20	2.1	19	86	13	57	78	2	4	14	1.03
3642737--3642773	16	2.3	17	81	13	51	75	5	5	13	1.15
3643525--3643565	22	1.9	21	90	5	64	34	0	0	65	0.93
3643526--3643572	22	2.2	22	84	3	60	40	0	0	59	0.97
3643860--3643927	15	4.7	15	74	12	54	38	0	0	61	0.96
3643848--3643898	17	2.9	18	75	22	54	35	0	0	64	0.94
3643863--3643953	42	2.1	45	84	10	118	42	1	1	54	1.14
3647127--3647160	9	3.6	9	85	14	50	64	0	0	35	0.94
3647313--3647552	133	1.8	131	93	1	417	45	10	5	38	1.64
3647530--3647568	20	2.0	21	85	10	55	30	12	2	53	1.52
3654018--3654069	21	2.5	22	90	6	81	46	1	0	51	1.12
3654059--3654093	8	4.4	8	85	0	52	57	0	0	42	0.99
3666504--3666821	109	3.0	109	84	5	395	27	14	19	38	1.91
3666645--3666836	100	1.9	98	92	2	321	29	14	20	36	1.91
3674972--3675227	134	1.9	134	86	4	365	27	11	14	46	1.78
3677810--3677860	8	6.4	8	80	13	52	80	0	7	11	0.90
3677814--3677862	23	2.1	22	88	7	71	81	0	8	10	0.87
3679011--3679059	21	2.3	22	86	6	75	34	6	16	42	1.73
3679283--3679331	17	2.9	17	75	6	55	24	18	12	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3679428--3679460	17	1.9	17	93	0	57	60	3	0	36	1.12
3679528--3679570	17	2.5	17	80	3	50	41	13	9	34	1.77
3679564--3679672	51	2.2	51	83	5	132	35	12	7	44	1.71
3679666--3679724	17	3.5	16	72	9	55	28	13	8	49	1.71
3679615--3679732	34	3.5	33	78	9	105	31	14	9	44	1.77
3679736--3679787	17	3.1	17	86	10	63	26	17	15	40	1.89
3680210--3680234	13	1.9	13	100	0	50	84	0	8	8	0.79
3681241--3681328	46	1.9	45	86	4	122	52	3	10	34	1.52
3683813--3683889	38	2.0	38	92	0	127	44	6	11	37	1.67
3684009--3684048	21	1.9	21	90	10	64	50	0	2	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125