genome.fa.s46.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  105  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20668208--20668259	25	2.0	26	92	3	88	28	21	21	28	1.98
20668288--20668734	159	2.8	157	75	6	411	21	26	27	24	1.99
20668708--20668760	26	2.0	26	85	7	72	28	22	18	30	1.98
20668904--20668956	26	2.0	26	96	0	97	26	28	20	24	1.99
20668599--20668960	196	1.8	196	83	2	476	22	26	26	24	2.00
20669247--20669299	26	2.0	26	86	13	74	30	24	16	28	1.97
20671192--20671244	26	2.0	26	86	13	74	30	24	16	28	1.97
20671355--20671405	26	2.0	26	88	0	75	29	21	19	29	1.98
20671847--20671898	26	2.0	26	85	7	70	32	23	13	30	1.93
20672160--20672731	158	3.6	157	77	4	558	18	27	29	24	1.98
20672595--20672952	195	1.8	196	86	3	524	19	25	29	25	1.99
20672901--20672951	26	2.0	26	84	7	68	29	21	17	31	1.96
20674112--20674163	26	2.0	25	88	3	77	26	17	23	32	1.96
20674483--20674774	158	1.8	158	83	5	385	20	26	29	23	1.99
20675541--20675591	26	2.0	26	92	7	86	25	27	19	27	1.99
20676042--20676094	26	2.0	26	89	7	81	24	24	22	28	2.00
20676666--20676718	26	2.0	26	92	0	88	26	26	20	26	1.99
20677925--20677977	26	2.0	26	85	7	72	26	22	18	32	1.97
20681795--20681847	21	2.6	21	90	3	81	20	24	39	15	1.91
20685440--20685492	26	2.0	26	92	0	88	26	28	18	26	1.98
20686101--20686153	26	2.0	26	82	7	63	28	20	18	32	1.97
20686310--20686362	26	2.0	26	89	7	81	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20686494--20686545	25	2.0	26	92	3	88	26	26	21	25	1.99
20686280--20686704	183	2.3	184	82	3	500	22	26	26	25	2.00
20686836--20686888	26	2.0	26	82	13	65	30	22	16	30	1.96
20686924--20687580	197	3.3	191	73	13	546	21	26	28	24	1.99
20687229--20687281	26	2.0	26	85	7	72	24	20	22	32	1.98
20686777--20687649	394	2.2	393	84	2	1099	21	25	27	25	1.99
20688503--20688555	26	2.0	26	88	0	79	28	28	16	26	1.97
20689202--20689251	26	1.9	26	91	0	82	28	28	18	26	1.98
20689312--20689626	159	2.0	159	87	0	459	16	27	32	22	1.96
20690035--20690084	26	1.9	26	95	0	91	26	28	20	26	1.99
20689928--20690268	184	1.8	185	86	3	499	19	27	29	23	1.98
20690938--20690988	26	2.0	26	88	0	75	27	23	17	31	1.97
20691288--20691344	26	2.2	26	100	0	114	29	21	17	31	1.96
20691876--20692146	135	2.0	134	83	2	337	19	26	28	25	1.99
20692118--20692170	26	2.0	26	82	13	65	28	22	18	30	1.98
20692327--20692379	26	2.0	26	88	0	79	26	28	20	24	1.99
20692827--20692879	26	2.0	26	92	0	88	26	26	20	26	1.99
20692677--20693025	184	1.9	184	80	2	414	20	26	29	23	1.99
20693135--20693187	26	2.0	26	89	7	81	30	24	15	30	1.95
20693858--20693910	26	2.0	26	92	0	88	26	26	20	26	1.99
20694551--20694603	26	2.0	26	88	0	79	32	26	15	26	1.95
20695053--20695104	26	2.0	25	85	3	68	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20695553--20695606	26	2.1	26	89	6	83	27	24	20	27	1.99
20695613--20696043	158	2.7	157	72	10	385	21	28	27	22	1.99
20696014--20696069	26	2.2	26	96	0	103	25	16	26	32	1.96
20696191--20696809	159	3.8	159	76	6	558	23	29	25	20	1.99
20696040--20696823	330	2.4	330	82	3	862	23	29	25	21	1.99
20697198--20697248	26	2.0	26	88	7	77	29	17	23	29	1.97
20697223--20697685	158	2.9	157	72	6	389	23	31	26	18	1.98
20698463--20699014	158	3.5	157	73	4	484	23	30	27	19	1.98
20699150--20699803	159	4.1	158	76	5	543	22	30	28	18	1.98
20700505--20700557	26	2.0	26	85	7	72	32	20	22	24	1.98
20701057--20701109	26	2.0	26	85	7	72	33	16	18	30	1.94
20702307--20702359	26	2.0	26	92	0	88	24	18	28	28	1.98
20702516--20702568	26	2.0	26	88	0	79	26	18	28	26	1.98
20705125--20705177	26	2.0	26	85	7	72	28	16	24	30	1.97
20706679--20706731	26	2.0	26	89	7	81	30	20	22	26	1.98
20707181--20707230	26	1.9	26	87	0	73	32	14	26	28	1.94
20707377--20707428	26	2.0	26	88	7	79	28	17	25	28	1.97
20706680--20707967	698	1.8	697	81	4	1592	24	27	26	21	1.99
20708939--20708991	26	2.0	26	96	0	97	24	20	28	26	1.99
20709441--20709519	26	3.0	26	90	0	122	26	18	26	27	1.98
20709136--20709828	369	1.9	369	83	3	910	23	29	26	20	1.99
20709492--20710068	159	3.6	157	74	5	482	24	29	28	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20710039--20710101	33	1.9	33	93	0	108	26	17	46	9	1.79
20713027--20713079	26	2.0	26	89	7	81	28	16	24	30	1.97
20713176--20714305	501	2.3	502	80	4	1235	25	28	24	21	1.99
20714202--20714254	26	2.0	26	96	0	97	24	20	28	26	1.99
20714294--20714331	13	2.9	13	96	0	67	15	21	55	7	1.66
20714720--20714852	67	2.0	67	93	0	230	20	30	21	27	1.98
20714832--20714884	26	2.0	26	96	0	97	24	20	28	26	1.99
20715027--20715079	26	2.0	26	85	7	72	28	16	24	30	1.97
20715052--20715389	158	2.1	158	79	5	353	23	29	26	19	1.98
20715566--20715618	26	2.0	26	89	7	81	28	18	24	28	1.98
20714832--20715828	539	1.9	537	80	3	1160	25	27	25	22	2.00
20716817--20717476	158	4.2	158	76	5	539	22	30	27	19	1.98
20717450--20717502	26	2.0	26	88	0	79	26	22	28	22	1.99
20717305--20718041	184	3.9	183	78	8	716	23	29	26	21	1.99
20718349--20718401	26	2.0	26	92	0	88	26	26	20	26	1.99
20718692--20718744	26	2.0	26	89	7	81	26	22	20	30	1.98
20718322--20718943	343	1.8	343	81	2	793	20	25	28	24	1.99
20718285--20718991	343	2.1	343	79	2	783	19	26	28	24	1.99
20719620--20719671	26	2.0	26	85	7	70	26	25	21	26	1.99
20721041--20721093	26	2.0	26	89	7	81	28	24	18	28	1.98
20722314--20722370	26	2.1	27	80	6	71	26	26	19	28	1.99
20722321--20722373	26	2.0	26	88	0	79	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20722263--20722899	184	3.5	183	80	2	704	20	26	27	24	1.99
20722686--20722741	26	2.2	26	90	6	87	30	21	19	28	1.98
20722715--20723058	158	2.2	157	79	6	374	19	27	30	22	1.98
20723349--20723399	26	2.0	26	92	0	84	29	25	17	27	1.98
20723806--20723858	26	2.0	26	92	7	90	26	24	20	28	1.99
20724041--20724404	159	2.3	158	76	2	352	20	26	29	23	1.98
20724826--20724878	26	2.0	26	92	0	88	28	28	18	24	1.98
20725315--20725367	26	2.0	26	82	13	65	32	20	16	30	1.95
20726651--20726703	26	2.0	26	92	0	88	28	28	18	24	1.98
20727128--20727180	26	2.0	26	89	7	81	28	24	18	28	1.98
20727495--20727547	26	2.0	26	89	7	81	28	26	20	24	1.99
20727554--20728087	159	3.4	159	74	4	479	19	27	31	21	1.97
20730292--20730344	26	2.0	26	89	7	81	30	28	16	24	1.97
20730491--20730541	26	2.0	26	92	0	84	29	23	19	27	1.98
20730832--20730884	26	2.0	26	85	7	72	28	22	18	30	1.98
20731555--20731633	26	3.0	26	94	3	133	29	26	17	26	1.98
20732082--20732134	26	2.0	26	85	7	72	26	24	18	30	1.98
20732634--20732686	26	2.0	26	89	7	81	28	22	20	28	1.99
20733262--20733806	158	3.4	158	76	6	460	18	26	30	24	1.98
20733292--20733669	159	2.4	158	77	7	397	18	26	30	24	1.98
20733780--20733832	26	2.0	26	92	7	90	30	22	20	26	1.98
20733976--20734028	26	2.0	26	92	7	90	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20734685--20734735	26	2.0	26	88	0	75	29	25	15	29	1.96
20735025--20735102	26	3.0	26	98	1	149	30	23	16	29	1.96
20735212--20735546	184	1.8	184	85	2	469	22	24	27	25	2.00
20735439--20735494	26	2.2	26	83	0	67	30	25	19	25	1.98
20735943--20735995	26	2.0	26	92	0	88	28	28	18	24	1.98
20735785--20736141	184	1.9	184	81	2	430	21	27	28	22	1.99
20735384--20736312	501	1.9	501	83	4	1210	21	27	27	24	1.99
20736636--20737178	158	3.4	158	76	6	474	18	25	30	25	1.98
20737152--20737204	26	2.0	26	89	7	81	32	22	18	26	1.97
20737348--20737400	26	2.0	26	92	7	90	28	22	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125