genome.fa.s46.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  106  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20737949--20738429	245	2.0	245	99	0	944	24	26	22	25	2.00
20738281--20738902	158	3.9	157	78	6	497	20	26	28	24	1.99
20738875--20738927	26	2.0	26	85	7	72	26	24	22	26	2.00
20739427--20739479	26	2.0	26	92	0	88	28	20	22	28	1.99
20740045--20740072	12	2.3	12	100	0	56	28	7	32	32	1.84
20740177--20740585	159	2.6	159	80	6	445	18	25	30	25	1.98
20740557--20740609	26	2.0	26	89	7	81	28	24	18	28	1.98
20740754--20740806	26	2.0	26	92	0	88	28	28	18	24	1.98
20740925--20741336	159	2.7	151	74	9	355	21	25	31	21	1.98
20741539--20741590	26	2.0	26	88	7	79	30	26	13	28	1.94
20743131--20743183	26	2.0	26	85	7	72	28	22	20	28	1.99
20743341--20743391	26	2.0	26	88	0	75	29	25	15	29	1.96
20744405--20744457	26	2.0	26	92	0	88	24	28	22	24	2.00
20744428--20744816	159	2.5	157	74	4	359	22	26	29	21	1.99
20745419--20745471	26	2.0	26	85	7	72	24	24	20	30	1.99
20745921--20745971	26	2.0	26	88	7	77	29	23	17	29	1.97
20746129--20746179	26	2.0	26	88	7	77	31	27	13	27	1.94
20746629--20746681	26	2.0	26	89	7	81	26	22	20	30	1.98
20746763--20746788	13	2.0	13	100	0	52	15	46	15	23	1.83
20746823--20746878	26	2.2	26	86	0	76	30	26	17	25	1.97
20745382--20747184	710	2.6	700	79	4	1822	20	25	28	25	1.99
20747168--20747236	26	2.7	26	95	0	120	24	20	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20747754--20747806	26	2.0	26	92	0	88	32	28	15	24	1.95
20748255--20748307	26	2.0	26	89	7	81	28	20	20	30	1.98
20748451--20748503	26	2.0	26	92	0	88	28	28	18	24	1.98
20748103--20749036	381	2.4	378	81	4	1088	22	27	27	23	1.99
20749531--20749581	26	2.0	26	92	0	84	29	27	17	25	1.98
20748595--20749904	697	1.9	698	83	4	1705	21	26	27	23	1.99
20748477--20750283	697	2.6	693	79	7	1656	22	26	27	23	1.99
20751093--20751145	26	2.0	26	89	7	81	26	22	20	30	1.98
20751710--20751737	12	2.3	12	100	0	56	28	7	32	32	1.84
20751886--20752251	159	2.3	160	80	5	411	22	26	28	22	1.99
20752578--20752630	26	2.0	26	82	7	63	30	24	16	28	1.97
20752796--20753104	159	1.9	159	79	3	345	18	26	31	23	1.97
20752678--20753104	158	2.7	157	76	5	412	18	28	30	23	1.97
20753075--20753130	26	2.2	26	90	6	87	28	21	19	30	1.98
20753800--20753850	26	2.0	26	88	7	77	25	27	17	29	1.98
20754380--20755211	342	2.4	341	79	3	832	20	27	27	24	1.99
20755879--20755930	26	2.0	26	88	7	79	26	25	19	28	1.98
20756342--20756653	171	1.8	171	82	2	403	20	25	32	21	1.98
20756735--20756787	26	2.0	26	96	0	97	26	28	20	24	1.99
20756907--20757422	159	3.2	156	74	10	420	21	25	27	25	1.99
20757395--20757447	26	2.0	26	96	0	97	26	28	20	24	1.99
20757775--20757827	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20758604--20759147	159	3.4	160	75	7	475	19	27	29	23	1.98
20758536--20759147	159	3.9	156	73	7	446	19	27	29	23	1.98
20758541--20759146	317	1.9	317	81	2	732	19	27	29	23	1.98
20758938--20760003	514	2.1	501	82	6	1256	19	25	29	24	1.99
20760132--20760184	26	2.0	26	85	7	72	30	18	20	30	1.97
20759406--20761056	866	1.9	869	82	4	2096	21	25	28	25	1.99
20761001--20761053	26	2.0	26	88	0	79	26	20	18	33	1.96
20762452--20762517	26	2.5	26	85	9	98	27	24	16	31	1.96
20762240--20762564	120	2.8	115	88	4	506	22	24	24	28	1.99
20763923--20763975	26	2.0	26	96	0	97	26	28	20	24	1.99
20764012--20764538	159	3.3	157	76	6	497	20	27	29	23	1.98
20766905--20766961	26	2.2	26	83	0	69	59	12	7	21	1.56
20765471--20767360	895	2.1	892	88	1	2789	25	24	23	27	2.00
20767162--20767213	26	2.0	25	92	3	86	30	25	17	26	1.97
20767821--20767899	26	3.0	25	90	3	113	27	27	17	26	1.98
20773921--20773973	26	2.0	26	89	7	81	26	22	20	30	1.98
20774641--20774719	26	3.0	26	83	10	108	30	26	18	24	1.98
20774998--20775050	26	2.0	26	89	7	81	28	24	18	28	1.98
20775220--20775721	158	3.2	156	72	6	427	19	25	30	24	1.98
20776051--20776103	26	2.0	26	89	7	81	28	24	18	28	1.98
20776770--20776822	26	2.0	26	88	0	79	30	28	16	24	1.97
20776796--20777448	159	4.1	158	78	3	465	19	27	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20777432--20777482	26	2.0	26	92	7	86	27	21	19	31	1.97
20779270--20779322	26	2.0	26	96	0	97	26	28	20	24	1.99
20779825--20781012	593	2.0	593	87	2	1717	29	21	21	27	1.99
20781085--20781137	26	2.0	26	89	7	81	24	26	20	28	1.99
20781249--20781610	157	2.3	157	80	5	399	21	26	27	24	1.99
20781586--20781636	26	2.0	26	92	7	86	29	23	15	31	1.95
20781781--20781833	26	2.0	26	82	7	63	26	24	18	30	1.98
20781965--20782017	26	2.0	26	92	0	88	30	22	18	28	1.98
20782347--20782398	26	2.0	26	92	0	86	30	21	21	26	1.98
20781428--20782517	380	2.9	378	79	5	1178	24	26	26	23	2.00
20783189--20783241	26	2.0	26	88	0	79	28	24	20	26	1.99
20783886--20783938	26	2.0	26	88	0	79	30	28	16	24	1.97
20783622--20783979	196	1.8	196	83	2	477	22	26	26	24	2.00
20784220--20784271	26	2.0	26	88	7	79	28	25	17	28	1.97
20784937--20784990	26	2.1	26	92	0	90	22	27	22	27	1.99
20784963--20785469	158	3.2	159	75	9	372	22	27	28	22	1.99
20785441--20785493	26	2.0	26	89	7	81	30	26	16	26	1.97
20784874--20786026	501	2.3	501	82	3	1360	21	26	28	23	1.99
20785942--20785994	26	2.0	26	85	7	72	28	22	18	30	1.98
20787555--20787607	26	2.0	26	85	7	72	24	22	22	30	1.99
20788670--20789045	197	1.9	195	80	8	440	21	26	27	24	1.99
20789316--20789368	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20792155--20792206	26	2.0	26	88	7	79	26	23	19	30	1.98
20791997--20792551	185	3.0	184	82	4	661	22	26	27	23	2.00
20792341--20792391	26	2.0	26	88	7	77	29	25	15	29	1.96
20793402--20793454	26	2.0	26	85	7	72	30	24	18	26	1.98
20793873--20794257	195	2.0	196	82	4	474	20	26	27	24	1.99
20794453--20794505	26	2.0	26	89	7	81	28	22	18	30	1.98
20795167--20795219	26	2.0	26	88	0	79	30	28	18	22	1.98
20795193--20795694	159	3.2	158	76	4	449	19	27	29	22	1.98
20795667--20795745	26	3.0	26	87	3	106	30	24	17	27	1.97
20795890--20795941	26	2.0	26	88	0	77	28	26	17	26	1.97
20796967--20797419	159	2.9	158	77	6	346	19	28	28	22	1.98
20797240--20797786	184	3.0	182	81	5	613	21	27	28	22	1.99
20797646--20797951	158	1.9	157	83	3	391	17	26	31	23	1.97
20798746--20799176	159	2.7	158	75	6	397	19	27	28	24	1.98
20799148--20799200	26	2.0	26	82	7	63	24	24	20	30	1.99
20799345--20799397	26	2.0	26	89	7	81	24	24	22	28	2.00
20799078--20799454	197	1.9	197	85	1	522	20	28	28	22	1.98
20799513--20799886	159	2.4	160	80	3	398	19	25	30	24	1.98
20799858--20799910	26	2.0	26	89	7	81	28	22	20	28	1.99
20800549--20800603	28	2.0	27	86	13	78	25	27	20	27	1.99
20801052--20801104	26	2.0	26	85	7	72	30	20	16	32	1.95
20801604--20801656	26	2.0	26	89	7	81	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20802328--20802380	26	2.0	26	92	0	88	28	28	18	24	1.98
20802670--20802722	26	2.0	26	89	7	81	28	22	20	28	1.99
20803970--20804371	159	2.5	159	77	6	370	19	27	28	24	1.98
20804347--20804396	26	1.9	26	92	8	84	24	26	22	28	1.99
20804554--20804606	26	2.0	26	92	0	88	26	30	18	24	1.98
20805035--20805105	26	2.7	26	91	4	117	26	25	18	29	1.98
20805270--20805618	184	1.9	184	86	1	493	20	27	29	22	1.99
20807157--20807235	26	3.0	26	90	3	124	27	22	18	30	1.98
20807932--20808362	159	2.7	159	77	6	451	19	26	30	22	1.98
20808408--20808460	26	2.0	26	92	0	88	22	22	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125