genome.fa.s46.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  60  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11970446--11970502	23	2.7	21	82	12	71	77	5	0	17	0.95
11970479--11970534	8	6.4	8	77	18	58	82	3	1	12	0.88
11970456--11970540	37	2.3	37	87	6	118	80	4	2	12	0.97
11970614--11970648	16	2.2	16	100	0	70	42	5	28	22	1.76
11971853--11971937	35	2.4	35	86	3	109	17	16	14	51	1.76
11971889--11972079	35	5.4	35	70	9	93	19	17	10	51	1.75
11971889--11972047	71	2.3	70	81	5	169	19	17	11	51	1.75
11972029--11972228	107	1.9	107	80	4	233	24	19	8	48	1.75
11972270--11972365	36	2.7	35	82	12	106	15	16	14	53	1.74
11972698--11972851	36	4.3	35	72	15	118	21	16	9	52	1.72
11972589--11972814	71	3.2	70	73	10	181	17	15	12	54	1.71
11972765--11972849	35	2.4	35	88	2	116	24	15	7	52	1.67
11972920--11973016	35	2.7	35	76	7	106	21	18	9	50	1.74
11972919--11973087	71	2.4	71	79	10	168	20	16	12	50	1.76
11973534--11973572	20	2.0	20	84	0	51	58	12	7	20	1.58
11975498--11975527	3	10.0	3	92	0	51	63	0	3	33	1.11
11977275--11977341	29	2.3	29	80	10	75	41	2	5	49	1.42
11987607--11988038	168	2.6	168	83	5	530	28	25	7	38	1.84
11988507--11988532	8	3.2	8	100	0	52	53	0	0	46	1.00
11988499--11988532	16	2.1	16	88	0	50	58	0	0	41	0.98
11988542--11989265	376	1.9	379	80	7	844	45	11	12	30	1.76
11989407--11989460	16	3.3	16	89	2	72	18	9	22	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11990395--11990427	12	2.9	12	86	13	52	48	0	0	51	1.00
11992835--11992868	11	3.1	11	86	0	50	17	2	2	76	1.04
11992972--11993236	22	11.9	22	71	18	117	50	0	0	48	1.06
11993106--11993227	5	25.4	5	69	23	68	57	0	0	41	1.04
11993104--11993227	13	9.1	13	75	23	105	57	0	0	41	1.04
11993104--11993226	3	41.7	3	66	26	50	57	0	0	41	1.04
11992972--11993227	85	2.9	91	80	12	291	51	0	0	47	1.06
11993039--11993227	59	3.2	59	79	14	180	55	0	0	44	1.03
11995864--11995900	11	3.2	12	77	14	51	75	16	0	8	1.02
11995973--11996021	22	2.2	22	82	13	57	71	16	0	12	1.14
11996600--11996658	22	2.6	22	91	2	91	38	0	0	61	0.96
11996885--11996911	13	2.1	13	100	0	54	85	7	0	7	0.75
11996897--11996931	17	2.1	17	88	0	52	74	20	2	2	1.08
11998376--11998420	20	2.3	19	88	7	63	37	0	2	60	1.09
11998383--11998434	19	2.7	18	80	16	52	40	0	1	57	1.10
12004389--12004476	44	2.0	44	100	0	176	50	13	9	27	1.72
12008062--12008101	19	2.0	19	85	9	53	22	20	2	55	1.56
12009665--12009730	34	1.9	34	84	0	87	39	10	21	28	1.86
12009957--12009985	2	14.5	2	100	0	58	51	0	0	48	1.00
12018991--12019017	2	13.5	2	100	0	54	51	0	0	48	1.00
12026391--12026415	11	2.3	11	100	0	50	24	28	0	48	1.52
12029030--12029062	16	2.2	16	89	10	52	24	3	6	66	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12032005--12032057	19	2.8	20	75	11	58	56	3	0	39	1.17
12033982--12034014	2	17.0	2	87	6	50	48	0	3	48	1.17
12034211--12034241	16	1.9	16	93	0	53	35	35	3	25	1.72
12036415--12036458	18	2.3	19	82	17	56	11	20	15	52	1.74
12043229--12043305	25	3.0	26	75	14	70	46	0	2	50	1.15
12043266--12043327	25	2.4	25	84	7	72	48	1	0	50	1.10
12045195--12045243	25	1.9	25	84	12	64	34	12	4	48	1.59
12045356--12045383	14	2.0	14	100	0	56	57	0	0	42	0.99
12045482--12045515	15	2.2	16	94	5	61	61	0	0	38	0.96
12045707--12045732	13	2.0	13	100	0	52	53	7	0	38	1.30
12045754--12045789	18	2.0	18	94	0	63	8	0	5	86	0.72
12045913--12045956	14	2.9	15	86	6	54	36	0	0	63	0.95
12046011--12046050	21	1.9	21	89	0	62	47	0	0	52	1.00
12046207--12046261	14	4.2	13	76	17	51	52	0	0	47	1.00
12048971--12048996	2	13.0	2	100	0	52	50	0	0	50	1.00
12053648--12053827	65	2.8	64	78	5	148	41	6	8	43	1.61
12053787--12053826	14	3.0	13	86	13	55	55	2	0	42	1.13
12053787--12053828	13	3.2	13	78	21	52	52	2	0	45	1.13
12054918--12054956	16	2.6	15	88	8	53	33	0	0	66	0.92
12055668--12055713	16	2.9	16	90	0	74	45	19	0	34	1.51
12055667--12055720	16	3.4	15	85	7	72	42	20	0	37	1.52
12073810--12073906	51	1.9	49	85	4	131	37	15	13	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12074247--12074321	8	9.6	8	87	8	102	65	20	1	13	1.34
12078907--12078946	21	2.0	21	85	5	55	65	2	7	25	1.32
12078934--12078964	5	6.4	5	92	7	55	80	0	0	19	0.71
12081306--12081342	18	2.1	18	100	0	74	62	0	16	21	1.33
12081475--12081523	18	2.7	18	93	3	80	16	16	16	51	1.78
12086545--12086676	71	1.9	71	82	3	167	36	8	15	39	1.78
12089425--12089451	14	1.9	14	100	0	54	33	0	7	59	1.25
12090783--12090820	3	12.7	3	100	0	76	68	0	0	31	0.90
12091070--12091140	37	1.9	37	83	11	92	39	1	1	57	1.16
12092304--12092341	20	1.9	19	89	5	58	73	0	13	13	1.09
12092501--12092591	31	2.8	31	81	6	110	51	7	1	39	1.38
12092744--12092773	14	2.2	14	94	5	53	46	3	0	50	1.18
12099315--12099387	19	4.1	19	72	13	73	45	30	10	13	1.78
12100458--12100501	16	2.7	16	78	3	52	18	2	4	75	1.09
12102084--12102134	23	2.2	24	86	6	70	25	1	5	66	1.24
12103283--12103312	15	2.0	15	93	0	51	23	0	0	76	0.78
12103261--12103305	18	2.5	17	79	10	54	33	0	0	66	0.92
12103261--12103312	12	4.4	12	76	11	54	30	0	0	69	0.89
12103339--12103377	16	2.4	16	87	8	53	48	5	0	46	1.24
12107614--12107655	8	5.1	8	81	16	50	30	2	0	66	1.04
12107614--12107655	17	2.5	17	78	17	52	30	2	0	66	1.04
12108309--12108342	17	1.9	18	88	5	52	14	11	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12108815--12108841	3	9.0	3	100	0	54	66	0	0	33	0.92
12108840--12108865	3	8.7	3	100	0	52	34	0	0	65	0.93
12109201--12109251	26	2.0	25	81	11	59	49	1	7	41	1.43
12109427--12109479	23	2.2	25	80	12	67	52	0	0	47	1.00
12113062--12113113	18	2.9	17	77	11	59	32	28	5	32	1.81
12113916--12113943	14	2.0	14	100	0	56	64	0	7	28	1.20
12114461--12114492	16	2.0	16	93	0	55	31	21	18	28	1.97
12115421--12115490	31	2.3	31	82	0	86	37	17	15	30	1.91
12129130--12129248	59	2.0	59	96	0	220	23	4	25	47	1.70
12137658--12137697	13	3.2	13	82	3	55	27	10	20	42	1.83
12139663--12139844	62	3.0	62	81	2	179	33	12	20	33	1.90
12139706--12139844	61	2.3	62	82	3	165	31	12	21	33	1.91
12142750--12142812	21	3.2	21	63	21	55	46	0	14	39	1.45
12142750--12142827	37	2.1	37	97	0	147	43	0	15	41	1.46
12142818--12142894	31	2.5	31	82	4	102	25	0	19	54	1.44
12143467--12143507	20	2.0	20	90	0	64	9	0	24	65	1.22
12144032--12144113	30	2.7	30	81	3	76	18	3	40	37	1.68
12149035--12149066	2	16.0	2	93	0	55	50	3	0	46	1.17
12155768--12155814	20	2.3	21	85	10	62	53	6	8	31	1.57
12156936--12156994	9	6.2	9	73	11	55	18	3	0	77	0.90
12157018--12157072	12	4.3	13	75	11	51	12	12	1	72	1.20
12157018--12157072	25	2.2	26	83	3	67	12	12	1	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12157849--12158247	211	1.9	212	82	5	513	45	10	7	36	1.67
12163260--12163347	23	3.9	22	70	7	61	35	6	17	40	1.76
12163207--12163442	91	2.6	90	81	7	273	34	6	16	42	1.74
12163246--12163484	45	5.4	44	77	10	191	33	5	18	42	1.73
12163390--12163488	21	4.6	21	71	9	83	28	4	19	48	1.67
12163207--12163488	45	6.3	44	78	5	176	32	5	17	44	1.72
12163428--12163517	21	4.2	21	73	10	74	27	4	16	51	1.64
12163462--12163530	21	3.1	21	82	10	84	31	5	10	52	1.59
12163393--12163557	21	8.0	21	68	17	67	28	5	18	47	1.70
12163418--12163605	101	1.9	100	80	3	225	31	5	16	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125