genome.fa.s46.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  18  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3143900--3143981	11	7.5	11	72	8	60	45	2	2	50	1.28
3143883--3144058	65	2.7	66	78	7	171	40	4	5	49	1.45
3143889--3144055	22	7.6	22	76	6	135	40	3	4	50	1.41
3144372--3144413	17	2.5	17	92	3	68	19	2	0	78	0.86
3145285--3145319	15	2.4	15	90	4	54	0	5	2	91	0.50
3145505--3145535	11	2.7	11	95	5	53	35	0	0	64	0.94
3145503--3145560	20	2.9	21	80	17	61	39	0	0	60	0.97
3146447--3146489	20	2.2	20	83	8	52	51	2	16	30	1.57
3147474--3147513	20	2.0	20	85	9	55	57	0	0	42	0.98
3150587--3150617	16	1.9	16	93	0	53	25	25	12	35	1.92
3158791--3158820	5	6.2	5	92	7	53	16	0	0	83	0.65
3159797--3159847	22	2.4	22	87	12	72	72	0	23	3	1.01
3159832--3159893	14	4.6	14	66	22	51	56	0	32	11	1.35
3159793--3159847	21	2.7	20	76	20	60	69	0	25	5	1.10
3159830--3159928	40	2.5	39	79	12	94	54	1	29	15	1.48
3167430--3167455	2	13.0	2	100	0	52	50	0	0	50	1.00
3171028--3171057	6	5.0	6	95	0	51	0	13	16	70	1.18
3180639--3180676	2	19.0	2	88	0	58	52	2	0	44	1.14
3182203--3182249	21	2.1	22	80	11	60	36	2	0	61	1.08
3182210--3182249	21	1.9	21	94	0	71	30	2	0	67	1.04
3183593--3183626	8	4.2	8	84	0	50	50	2	2	44	1.32
3184672--3184710	10	3.7	10	80	12	51	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3185311--3185419	53	2.0	54	92	1	184	41	9	2	46	1.50
3187160--3187211	24	2.2	24	92	0	86	36	7	0	55	1.29
3189306--3189348	3	14.0	3	85	4	59	62	0	0	37	0.95
3189313--3189345	16	2.1	16	94	0	57	66	0	0	33	0.92
3189311--3189349	19	2.1	19	95	0	69	66	0	0	33	0.92
3189930--3189957	2	14.0	2	100	0	56	50	0	0	50	1.00
3197072--3197106	16	2.2	16	94	0	61	34	11	11	42	1.77
3202663--3202693	16	1.9	16	100	0	62	38	0	3	58	1.15
3212004--3212071	30	2.3	30	80	7	77	38	10	5	45	1.63
3222230--3222277	10	4.8	10	79	7	53	64	2	0	33	1.05
3222235--3222277	10	4.4	10	80	16	54	69	0	0	30	0.88
3222235--3222277	20	2.2	20	91	4	70	69	0	0	30	0.88
3222314--3222359	24	1.9	24	81	0	56	52	4	0	43	1.21
3229164--3229189	12	2.2	12	100	0	52	23	11	23	42	1.86
3230242--3230299	23	2.6	23	80	17	61	43	1	3	51	1.28
3235428--3235482	17	3.1	17	80	15	58	32	1	0	65	1.03
3235435--3235489	19	3.0	18	82	15	60	32	3	0	63	1.12
3238142--3238210	29	2.4	30	85	4	88	65	8	1	24	1.30
3238646--3238671	12	2.2	12	100	0	52	57	34	0	7	1.27
3247476--3247509	17	1.9	17	88	5	50	41	0	8	50	1.34
3251567--3251594	2	14.0	2	100	0	56	0	50	0	50	1.00
3254224--3254269	20	2.3	20	85	10	67	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3254226--3254284	27	2.2	27	87	6	84	37	1	0	61	1.07
3254432--3254470	20	2.0	20	85	10	53	53	2	0	43	1.14
3255347--3255391	22	2.1	22	95	4	83	48	0	0	51	1.00
3256028--3256080	26	2.0	27	85	3	72	49	0	1	49	1.12
3257463--3257500	17	2.5	15	80	19	51	52	0	0	47	1.00
3257459--3257527	26	2.7	26	84	8	95	47	0	0	52	1.00
3257469--3257501	17	1.9	17	100	0	66	48	0	0	51	1.00
3257469--3257552	43	1.9	44	84	15	113	48	0	0	51	1.00
3257495--3257553	16	3.6	17	75	20	54	49	0	0	50	1.00
3257518--3257560	17	2.4	18	88	3	61	55	0	0	44	0.99
3257622--3257696	15	4.6	15	71	18	60	42	0	0	57	0.98
3257621--3257704	28	2.9	29	74	22	79	42	0	0	57	0.99
3257613--3257690	13	6.2	13	76	16	76	39	0	0	60	0.97
3257855--3257881	14	1.9	14	100	0	54	48	7	0	44	1.31
3258378--3258467	31	2.9	32	80	9	89	50	0	1	48	1.08
3258388--3258441	18	2.9	18	77	2	63	57	0	0	42	0.98
3264902--3265048	75	2.0	75	91	0	240	25	17	18	38	1.93
3267096--3267124	3	9.7	3	100	0	58	31	0	0	68	0.89
3268482--3268540	26	2.3	26	77	11	66	40	6	0	52	1.28
3269161--3269190	13	2.4	13	94	5	53	0	10	0	90	0.47
3269774--3269819	23	2.1	21	84	8	56	47	23	10	17	1.79
3271219--3271293	10	7.5	10	77	10	73	66	2	2	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3271219--3271485	19	13.7	19	67	11	101	55	5	1	37	1.32
3271282--3271350	28	2.4	29	88	7	97	47	5	0	46	1.26
3271344--3271400	10	5.9	10	73	8	55	61	8	0	29	1.26
3271331--3271449	38	3.1	37	80	6	112	57	9	0	32	1.36
3271450--3271489	18	2.3	18	86	4	55	45	2	0	52	1.14
3271512--3271559	20	2.4	20	83	10	62	35	0	2	62	1.07
3271529--3271561	10	3.3	10	91	0	57	30	0	0	69	0.88
3271738--3271774	10	3.6	10	85	7	56	43	0	0	56	0.99
3271738--3271819	9	8.8	9	68	16	51	39	0	2	58	1.11
3271740--3272193	20	23.1	20	64	14	83	36	3	5	55	1.38
3271922--3272021	40	2.4	42	78	8	107	31	4	6	59	1.40
3272053--3272166	10	11.8	9	69	13	66	33	1	5	59	1.30
3272104--3272166	19	3.3	19	79	0	72	31	1	1	65	1.12
3272004--3272187	29	6.3	28	69	12	102	35	1	5	57	1.31
3272152--3272194	10	4.6	9	85	8	59	46	0	4	48	1.22
3272054--3272194	9	14.7	9	74	11	75	36	1	5	56	1.32
3272053--3272198	19	7.4	19	71	9	69	36	1	6	55	1.33
3272355--3272411	28	2.1	27	83	6	71	54	7	3	35	1.45
3278958--3278987	16	1.9	15	93	6	51	40	16	23	20	1.91
3281398--3281441	18	2.4	18	84	3	52	25	0	31	43	1.55
3281473--3281598	8	15.8	8	69	15	73	13	1	32	52	1.50
3281473--3281550	23	3.3	24	80	10	81	12	0	32	55	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281586--3281636	16	3.2	16	83	2	59	23	3	21	50	1.65
3281736--3281780	16	2.8	16	82	0	63	20	4	24	51	1.66
3282982--3283013	16	1.9	17	93	6	57	0	31	0	68	0.90
3284974--3285098	54	2.3	54	95	0	223	42	20	5	32	1.75
3289433--3289489	25	2.3	25	84	3	71	59	1	0	38	1.08
3294881--3294918	15	2.4	16	86	4	51	18	2	7	71	1.23
3295096--3295152	29	2.0	29	96	0	105	66	0	10	22	1.22
3295134--3295179	7	6.6	7	85	11	51	86	4	2	6	0.75
3295804--3295834	10	3.1	10	100	0	62	87	0	12	0	0.55
3296684--3296713	2	15.0	2	100	0	60	50	0	0	50	1.00
3311958--3312114	52	3.0	51	83	3	179	28	22	7	42	1.81
3313960--3314000	15	2.6	16	84	3	57	39	17	12	31	1.86
3316187--3316300	55	2.1	55	91	4	187	31	14	18	35	1.90
3319001--3319056	16	3.7	14	76	21	51	39	1	8	50	1.44
3319202--3319251	16	3.1	16	82	5	55	80	8	0	12	0.92
3319233--3319262	13	2.3	13	94	0	51	80	3	3	13	0.97
3319218--3319276	18	3.2	18	81	11	59	81	3	5	10	0.96
3320145--3320187	3	14.7	3	95	4	79	69	0	0	30	0.88
3320466--3320831	119	3.1	118	77	5	351	43	14	22	18	1.86
3320998--3321065	35	2.0	34	85	8	93	48	13	11	26	1.76
3320997--3321043	17	2.7	17	83	3	58	44	17	10	27	1.81
3325716--3325771	16	3.5	16	76	16	53	28	3	8	58	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3325916--3325960	16	2.8	16	79	0	54	75	4	4	15	1.12
3326836--3326887	3	17.3	3	100	0	104	67	0	0	32	0.91
3328032--3328604	298	2.0	287	86	5	790	39	11	11	36	1.79
3328786--3328898	55	2.1	55	94	0	199	47	15	8	28	1.75
3331172--3331204	10	3.5	10	92	8	52	75	6	0	18	1.00
3332027--3332065	17	2.3	17	86	8	53	87	0	10	2	0.65
3332064--3332111	3	16.0	3	100	0	96	66	0	0	33	0.92
3332203--3332261	26	2.3	25	82	5	64	25	27	25	22	2.00
3332436--3332575	54	2.6	54	79	2	147	34	13	27	25	1.93
3332541--3333204	114	5.8	113	79	6	500	38	13	22	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125