genome.fa.s46.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  61  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12163673--12163757	17	5.0	17	72	5	73	32	15	11	40	1.83
12163647--12163800	51	3.0	51	81	0	182	33	14	11	40	1.83
12163676--12163770	34	2.8	34	75	10	95	31	15	11	41	1.83
12163773--12163831	18	3.2	18	80	2	64	33	18	11	35	1.88
12163890--12164071	92	2.0	92	87	2	267	31	9	15	42	1.80
12164243--12164343	11	8.4	12	72	18	70	15	12	0	70	1.23
12164288--12164343	24	2.3	24	84	6	69	16	12	0	71	1.15
12164950--12165007	13	4.2	13	77	18	55	27	1	1	68	1.08
12167587--12167860	58	4.7	55	75	15	189	36	9	6	47	1.60
12167587--12167883	59	5.0	60	76	14	235	36	9	6	48	1.60
12167587--12167884	117	2.5	114	79	12	284	36	9	6	47	1.60
12174502--12174555	21	2.5	22	81	6	74	33	16	3	46	1.65
12174934--12174968	16	2.2	16	94	0	61	42	11	14	31	1.81
12184074--12184304	58	4.0	57	79	7	229	36	11	6	45	1.67
12184345--12184369	10	2.5	10	100	0	50	12	8	0	80	0.92
12185176--12185213	18	2.1	19	90	5	60	31	2	13	52	1.54
12185276--12185355	3	26.7	3	94	0	61	32	13	0	53	1.40
12186183--12186229	6	7.7	6	81	13	60	0	14	2	82	0.75
12186183--12186229	18	2.6	18	86	3	67	0	14	2	82	0.75
12186584--12186667	37	2.3	37	100	0	168	36	20	14	28	1.91
12189843--12189872	5	6.0	5	92	0	51	0	23	0	76	0.78
12194820--12195501	340	2.0	339	92	0	1121	38	14	17	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12198740--12198778	18	2.4	16	87	12	53	23	0	23	53	1.46
12198828--12198859	3	10.7	3	93	0	55	34	0	0	65	0.93
12198823--12198855	15	2.2	15	94	0	57	36	0	3	60	1.12
12199311--12199346	18	1.9	18	88	5	54	19	2	13	63	1.41
12199696--12199725	15	1.9	16	93	6	53	20	0	0	80	0.72
12199845--12199897	12	4.4	12	75	0	52	69	1	7	20	1.22
12201508--12201549	18	2.2	20	83	8	52	71	7	4	16	1.26
12202534--12202562	11	2.7	11	94	5	51	55	10	10	24	1.65
12207534--12207568	2	18.0	2	94	5	63	51	0	0	48	1.00
12211424--12211514	10	9.4	10	76	10	64	56	5	1	37	1.30
12211425--12211505	20	4.2	19	84	7	101	56	6	1	35	1.32
12211425--12211565	9	15.0	9	72	12	54	56	4	2	36	1.33
12211523--12211586	27	2.4	26	80	14	69	57	3	3	35	1.30
12211657--12211708	18	2.8	19	80	11	63	71	5	5	17	1.26
12211701--12211764	20	3.2	20	82	8	78	59	0	6	34	1.23
12211849--12211883	10	3.4	10	92	4	52	71	5	0	22	1.07
12211919--12211969	21	2.5	20	87	12	77	43	3	0	52	1.19
12211919--12211977	20	2.9	19	83	11	64	38	3	1	55	1.26
12212187--12212236	11	5.0	10	77	18	59	30	2	12	56	1.47
12212211--12212296	40	2.1	43	82	10	108	32	3	3	60	1.30
12212255--12212315	29	2.1	29	81	6	70	40	1	1	55	1.19
12216600--12216653	20	2.7	20	88	2	72	35	11	3	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12217267--12217332	22	3.0	22	78	12	64	19	4	13	62	1.48
12226993--12227075	40	2.1	40	81	4	96	45	8	12	33	1.71
12226967--12227169	112	1.8	112	84	2	282	48	5	9	35	1.61
12227115--12227192	40	2.0	40	89	0	120	42	5	15	37	1.69
12226957--12227198	112	2.1	113	81	3	281	48	5	11	35	1.62
12231041--12231069	14	2.1	14	100	0	58	17	6	41	34	1.76
12241576--12241629	29	1.9	27	88	7	81	35	1	5	57	1.33
12242143--12242450	168	1.8	168	85	1	438	17	17	9	55	1.68
12243679--12244160	141	3.4	140	77	9	401	38	11	7	41	1.70
12243676--12244187	71	7.2	68	74	12	295	38	11	7	41	1.70
12243679--12244187	70	7.2	70	74	10	338	38	11	7	41	1.70
12243772--12244190	141	3.0	138	78	9	407	39	11	6	41	1.69
12244416--12244450	18	1.9	18	88	0	52	60	11	17	11	1.59
12244841--12244880	8	4.9	8	90	6	62	52	2	0	45	1.14
12245610--12247076	161	9.0	161	77	5	1136	42	14	10	33	1.79
12245610--12247069	322	4.5	320	80	5	1355	42	14	10	33	1.79
12252448--12252473	7	3.7	7	100	0	52	30	0	30	38	1.58
12255996--12256039	22	2.0	22	83	16	56	43	0	4	52	1.22
12256069--12256117	25	2.0	25	84	11	66	57	4	0	38	1.18
12256080--12256119	21	1.9	21	89	0	62	60	2	0	37	1.11
12258407--12258452	10	4.9	10	74	15	53	50	0	2	47	1.13
12258500--12258575	40	1.9	39	81	7	91	51	2	5	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12258641--12258679	20	1.9	20	89	5	60	0	35	0	64	0.94
12259308--12259428	15	8.1	15	67	20	58	52	1	1	43	1.20
12261190--12261231	21	2.0	21	85	0	57	16	4	16	61	1.50
12261741--12261791	22	2.5	22	81	9	63	13	7	15	62	1.52
12270600--12270644	19	2.3	20	85	11	67	46	15	11	26	1.79
12273004--12273094	45	2.0	45	89	4	139	56	5	6	31	1.48
12273046--12273070	13	1.9	13	100	0	50	64	4	0	32	1.12
12273682--12273728	21	2.2	21	92	0	76	44	6	14	34	1.71
12274654--12274859	102	2.0	102	96	0	376	33	6	9	50	1.61
12275152--12275187	14	2.5	15	90	4	56	41	0	5	52	1.24
12281522--12281546	6	4.2	6	100	0	50	32	0	16	52	1.44
12282907--12282973	28	2.4	28	84	0	89	29	5	8	55	1.55
12287009--12287062	28	1.9	28	88	0	81	42	3	7	46	1.49
12288031--12288275	123	2.0	121	89	1	373	42	11	9	36	1.75
12288248--12288277	2	15.0	2	92	0	51	46	0	3	50	1.18
12289790--12289857	30	2.3	29	77	5	82	26	7	5	60	1.46
12290323--12290411	42	2.1	42	89	0	133	23	22	7	46	1.78
12295697--12295721	13	1.9	13	100	0	50	48	8	0	44	1.32
12298271--12298319	25	1.9	26	83	4	64	32	4	8	55	1.48
12298557--12298605	18	2.7	18	74	0	53	57	4	0	38	1.18
12298805--12298856	21	2.5	22	87	6	72	46	3	5	44	1.45
12299361--12299404	21	2.2	20	84	8	54	43	4	6	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12299432--12299496	31	2.1	30	81	16	71	49	1	9	40	1.44
12299764--12299801	17	2.2	17	86	9	51	68	2	0	28	1.03
12299909--12299953	20	2.2	21	84	4	56	44	6	0	48	1.29
12301408--12301479	24	3.0	24	100	0	144	62	12	12	12	1.55
12301733--12301780	21	2.3	21	96	0	87	50	8	22	18	1.74
12302495--12302521	12	2.2	12	100	0	54	40	14	7	37	1.74
12302682--12302736	18	3.1	18	91	0	83	60	14	12	12	1.60
12302769--12302802	15	2.3	14	90	10	50	41	2	0	55	1.15
12302937--12302964	9	3.1	9	100	0	56	46	10	42	0	1.38
12303046--12303109	21	3.0	21	97	0	119	51	18	20	9	1.73
12303355--12303874	24	23.0	24	72	12	386	53	11	16	19	1.72
12303325--12303583	90	2.9	90	98	0	491	53	10	16	19	1.72
12303469--12303781	66	4.7	66	98	0	590	52	9	16	20	1.72
12304274--12304309	17	2.1	17	100	0	72	77	11	11	0	0.99
12307320--12307353	17	2.0	17	100	0	68	35	23	11	29	1.90
12309306--12309348	22	2.0	22	90	0	68	37	2	18	41	1.63
12311645--12311687	21	2.0	21	90	0	68	46	0	2	51	1.13
12314397--12314511	58	2.0	58	92	0	194	37	13	18	31	1.89
12319097--12319134	19	2.0	20	85	15	53	44	5	21	28	1.73
12319440--12319532	37	2.5	37	81	5	100	38	16	20	24	1.92
12325737--12326082	174	2.0	174	85	0	467	25	12	23	39	1.89
12333858--12333899	18	2.5	17	76	7	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12342670--12342872	55	3.7	55	85	2	257	34	10	8	46	1.68
12342670--12342872	109	1.9	109	89	2	318	34	10	8	46	1.68
12344465--12344497	13	2.6	13	90	4	50	72	0	6	21	1.05
12344653--12344696	15	2.9	15	89	3	61	4	2	9	84	0.85
12344652--12344696	18	2.7	16	82	6	54	4	2	8	84	0.84
12344708--12345461	44	17.5	44	85	2	908	40	20	16	21	1.91
12344708--12345461	132	5.8	132	87	3	1009	40	20	16	21	1.91
12345446--12345534	42	2.1	42	89	2	135	35	26	11	25	1.90
12347082--12347124	9	4.9	9	83	13	54	6	18	0	74	1.04
12347084--12347166	16	5.1	16	77	13	82	6	15	1	77	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125