genome.fa.s46.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  102  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19841753--19842931	180	6.6	179	76	8	921	41	9	7	41	1.66
19841754--19842931	361	3.3	357	78	6	927	41	9	7	41	1.66
19843932--19850762	181	38.0	179	76	7	5094	41	10	8	40	1.69
19843932--19857024	361	36.4	360	71	10	6705	41	10	8	40	1.69
19850485--19851038	286	1.9	285	83	5	717	37	10	9	43	1.70
19850768--19851247	181	2.7	175	79	9	488	38	9	8	42	1.68
19850298--19851177	467	1.9	465	80	6	1039	38	10	8	42	1.70
19852233--19857047	180	27.2	176	72	11	2495	41	10	8	40	1.69
19852233--19855421	181	18.0	181	75	7	2153	41	10	8	39	1.69
19856252--19856284	17	2.0	17	88	5	50	39	12	0	48	1.40
19856008--19857047	182	5.8	179	78	7	932	40	10	7	41	1.67
19856908--19857177	146	1.8	146	88	1	416	37	12	12	38	1.80
19857059--19857993	182	5.2	176	75	11	599	42	9	9	39	1.68
19857248--19858002	360	2.1	358	78	8	782	42	8	8	39	1.67
19857245--19858846	854	1.9	855	88	2	2457	42	9	9	38	1.69
19858019--19859325	181	7.2	180	77	6	1121	42	10	8	38	1.70
19858019--19859292	361	3.5	359	79	6	1188	42	10	8	38	1.70
19858019--19859315	542	2.4	537	82	4	1471	42	10	8	38	1.70
19859221--19859253	18	1.9	17	88	11	50	42	6	3	48	1.43
19859334--19862244	181	16.3	178	75	7	1987	40	10	9	39	1.71
19859386--19862082	361	7.6	356	75	7	1470	41	10	8	39	1.71
19859340--19862244	542	5.4	538	75	8	1545	41	10	9	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19859334--19862241	899	3.3	891	77	6	2591	40	10	9	39	1.71
19861610--19861996	175	2.2	180	81	6	439	42	9	9	38	1.71
19862022--19862062	18	2.2	19	86	8	57	34	19	4	41	1.73
19862438--19863704	361	3.5	358	79	6	1152	40	9	8	41	1.68
19863335--19863384	17	2.8	19	67	14	52	40	6	10	44	1.63
19862273--19863823	181	8.6	180	78	6	1263	40	9	8	41	1.69
19864412--19865263	180	4.8	177	75	9	745	41	9	7	40	1.67
19864456--19865155	349	2.0	349	81	5	820	41	9	8	40	1.67
19865152--19865378	124	1.8	125	82	8	293	45	8	7	38	1.63
19867259--19867847	179	3.3	174	74	8	476	39	10	9	40	1.71
19868021--19868829	180	4.5	180	80	5	810	40	7	9	42	1.65
19868031--19868813	362	2.2	361	81	4	907	40	6	9	42	1.65
19870153--19870390	113	2.1	112	92	0	395	32	18	28	20	1.96
19872309--19872399	45	2.0	45	91	0	146	28	20	27	23	1.99
19872309--19872427	45	2.6	45	86	0	139	26	21	28	22	1.99
19878490--19879342	180	4.8	178	76	8	718	42	9	7	41	1.65
19879230--19879470	124	1.9	126	81	10	298	46	7	7	38	1.61
19880211--19880257	21	2.2	21	96	0	85	25	27	29	17	1.97
19881359--19881948	180	3.3	173	74	9	451	39	10	9	40	1.71
19882121--19882925	180	4.5	179	80	6	809	40	6	10	42	1.65
19882121--19882897	362	2.1	360	80	4	864	40	6	10	41	1.66
19884252--19884490	113	2.1	113	92	1	399	32	19	28	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19884289--19884516	113	2.0	113	83	5	291	33	21	25	19	1.97
19886370--19886459	45	2.0	45	93	0	153	26	21	28	23	1.99
19886370--19886488	45	2.6	45	86	0	139	25	21	30	22	1.99
19889486--19889518	17	1.9	17	93	0	57	30	9	36	24	1.86
19890748--19890777	9	3.2	9	95	4	51	63	0	0	36	0.95
19890750--19890779	10	3.1	10	95	4	53	63	0	0	36	0.95
19899042--19899086	22	2.0	22	100	0	90	33	17	26	22	1.96
19909667--19909722	21	2.7	21	85	0	85	30	23	30	16	1.96
19938356--19938409	21	2.6	21	93	0	90	27	22	31	18	1.97
19949925--19949987	31	2.0	31	100	0	126	34	12	20	31	1.90
19951686--19951730	22	2.0	22	95	0	81	24	35	11	28	1.90
19957336--19957392	30	1.9	30	92	0	96	33	17	22	26	1.96
19957746--19957833	45	2.0	45	84	4	115	26	20	26	27	1.99
19964474--19964575	45	2.3	45	84	0	123	23	18	32	25	1.97
19974360--19974409	17	2.9	17	81	0	64	18	20	26	36	1.95
19991659--19991694	8	4.5	8	100	0	72	25	0	50	25	1.50
19992950--19992994	20	2.2	20	92	0	72	44	13	8	33	1.75
19994353--19994397	21	2.1	21	95	0	81	33	4	37	24	1.76
19996313--19996425	59	1.9	59	87	0	163	31	12	32	23	1.91
19999181--19999234	24	2.2	24	96	0	99	27	25	31	14	1.95
20000550--20000641	36	2.6	36	80	3	105	22	17	32	27	1.96
20009411--20009486	38	2.0	38	97	0	143	23	38	15	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20039265--20039453	35	5.3	34	64	17	96	20	23	14	41	1.89
20039194--20039494	145	2.1	146	90	1	471	20	22	14	42	1.88
20039194--20039497	73	4.2	73	86	4	427	20	23	14	42	1.88
20039498--20039677	99	1.8	99	84	4	247	20	18	13	47	1.81
20040082--20040127	3	15.3	3	100	0	92	67	0	0	32	0.91
20041836--20041876	19	2.2	19	100	0	82	19	36	14	29	1.92
20047816--20047859	23	1.9	23	90	0	70	22	38	20	18	1.93
20048314--20048373	27	2.3	27	82	2	68	63	8	3	25	1.38
20062933--20062964	15	2.1	15	100	0	64	31	31	12	25	1.92
20071062--20071855	411	1.9	410	88	0	1174	33	22	20	24	1.97
20072644--20072698	23	2.4	23	84	0	65	21	25	30	21	1.98
20096891--20096988	41	2.4	43	88	6	141	25	13	32	28	1.93
20132571--20132625	22	2.4	23	78	6	58	27	16	30	25	1.96
20155765--20158268	181	13.8	181	74	9	1629	41	9	8	41	1.67
20155817--20157452	536	3.0	532	78	7	1661	41	9	8	40	1.68
20157314--20157609	148	2.0	148	100	0	592	39	10	7	42	1.67
20157598--20158268	177	3.7	175	77	8	615	41	9	7	41	1.64
20159088--20160005	181	5.1	181	76	8	603	39	8	9	41	1.69
20158752--20166257	536	14.0	536	73	12	3509	40	8	9	41	1.68
20160340--20160372	17	2.0	17	88	5	50	48	0	12	39	1.40
20160058--20166254	181	34.7	181	73	11	3467	40	8	9	41	1.69
20162037--20162524	168	2.9	169	77	7	405	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20164216--20165439	537	2.3	536	81	9	1316	41	8	9	40	1.69
20166264--20166305	19	2.2	19	83	8	50	35	7	2	54	1.41
20168029--20168347	73	4.4	73	87	3	473	19	25	14	40	1.90
20168029--20168344	145	2.2	146	93	1	537	19	25	14	40	1.90
20168973--20169013	11	3.9	11	78	21	52	65	0	0	34	0.93
20168974--20169013	19	2.1	19	90	9	64	67	0	0	32	0.91
20180472--20180509	18	2.1	18	100	0	76	34	34	21	10	1.87
20181653--20181738	45	1.9	45	81	9	104	27	22	29	20	1.99
20214808--20214842	18	1.9	18	88	0	52	20	34	20	25	1.96
20216510--20216622	45	2.5	45	71	5	104	24	27	19	28	1.99
20225570--20225616	23	2.0	23	100	0	94	29	21	17	31	1.96
20231542--20231665	47	2.7	45	81	4	131	22	27	23	26	2.00
20238087--20238146	28	2.1	28	100	0	120	26	20	16	36	1.93
20238883--20239098	112	1.9	112	88	1	326	22	26	17	33	1.96
20240428--20241224	179	4.5	180	79	7	802	42	9	7	40	1.66
20240514--20241191	353	1.9	352	83	3	882	41	10	6	41	1.65
20245289--20245322	18	2.0	18	88	11	54	32	5	11	50	1.63
20245085--20246500	176	8.0	171	72	13	745	41	11	7	39	1.69
20245053--20246484	530	2.7	536	82	7	1647	41	10	7	39	1.69
20246411--20246625	118	1.9	114	82	7	272	43	9	6	40	1.64
20246524--20249199	182	14.8	181	77	6	2173	42	10	8	39	1.69
20246528--20249180	363	7.3	360	75	7	1923	42	10	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20250829--20252110	181	7.1	180	78	5	1114	41	9	8	40	1.67
20252181--20257240	181	28.2	181	76	7	3735	40	8	9	41	1.69
20254131--20254449	169	1.9	171	84	3	437	43	9	7	39	1.64
20257241--20261929	181	26.1	181	75	8	3316	39	9	9	41	1.70
20263051--20263102	21	2.5	21	90	6	79	30	25	26	17	1.97
20264213--20265093	181	4.9	181	80	4	822	43	11	6	38	1.66
20264240--20265093	358	2.4	358	80	6	911	44	10	6	38	1.66
20265365--20267581	181	12.5	179	75	9	1439	41	8	9	40	1.69
20265365--20267581	363	6.3	352	74	8	1236	41	8	9	40	1.69
20265841--20266161	171	1.9	171	81	5	389	42	6	9	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125