genome.fa.s46.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  85  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16858749--16858797	24	2.0	24	96	0	89	59	8	0	32	1.27
16859863--16859915	9	5.1	11	73	26	53	18	1	0	79	0.83
16859867--16859915	16	3.1	16	80	13	66	18	2	0	79	0.83
16859859--16859914	25	2.3	24	80	20	71	21	1	0	76	0.87
16860028--16860127	12	7.2	13	74	20	51	58	1	9	32	1.36
16860090--16860129	3	13.3	3	100	0	80	67	0	0	32	0.91
16863503--16863605	19	5.3	18	77	17	75	55	9	6	28	1.58
16863535--16863582	20	2.5	19	86	6	62	50	12	8	29	1.69
16863658--16863730	18	4.2	17	76	10	67	75	1	4	19	1.04
16863663--16863731	7	9.6	7	76	7	59	76	1	4	17	1.02
16863664--16863750	39	2.2	39	80	13	99	74	3	5	16	1.14
16864232--16864273	15	2.8	16	82	7	52	50	30	0	19	1.48
16864765--16864859	6	15.8	6	92	4	138	68	4	0	27	1.08
16867874--16867922	24	2.0	24	96	0	89	59	8	0	32	1.27
16868986--16869043	11	5.5	11	72	27	54	20	1	0	77	0.86
16868988--16869042	22	2.7	20	84	15	76	20	1	0	78	0.85
16869002--16869043	16	2.7	15	82	17	59	19	2	0	78	0.86
16869161--16869265	3	35.0	3	89	0	111	56	0	9	33	1.38
16869267--16869293	14	1.9	14	100	0	54	51	18	22	7	1.70
16872601--16872703	19	5.3	18	77	17	75	55	9	6	28	1.58
16872633--16872680	20	2.5	19	86	6	62	50	12	8	29	1.69
16872759--16872831	18	4.2	17	76	10	67	75	1	4	19	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16872764--16872832	7	9.6	7	76	7	59	76	1	4	17	1.02
16872765--16872851	39	2.2	39	80	13	99	74	3	5	16	1.14
16873333--16873374	15	2.8	16	82	7	52	50	30	0	19	1.48
16873866--16873973	6	17.8	6	91	5	155	68	3	0	27	1.06
16876983--16877031	24	2.0	24	96	0	89	59	8	0	32	1.27
16878093--16878132	8	4.7	9	85	14	50	22	2	0	75	0.93
16878097--16878148	16	3.5	15	76	23	56	23	1	0	75	0.91
16878266--16878374	3	36.3	3	89	0	119	56	0	9	33	1.37
16894007--16894056	25	2.0	25	100	0	100	36	16	8	40	1.77
16896726--16896750	13	1.9	13	100	0	50	12	8	0	80	0.92
16899032--16899186	75	2.0	77	95	5	278	32	5	14	47	1.67
16900182--16900239	29	2.0	29	100	0	116	44	17	3	34	1.65
16900396--16900453	28	2.0	30	83	6	75	46	8	6	37	1.61
16900860--16900997	71	2.0	71	97	1	260	41	17	15	26	1.88
16900956--16901039	42	2.0	42	90	0	132	36	13	19	30	1.89
16900885--16901109	112	2.0	113	87	0	326	39	15	17	27	1.90
16903346--16903525	89	2.0	89	97	0	342	19	27	8	45	1.79
16905872--16905997	22	5.8	21	75	13	103	34	11	7	47	1.66
16905962--16906016	11	5.1	11	75	2	58	40	5	3	50	1.43
16905862--16906100	65	3.6	65	74	8	173	37	8	6	47	1.60
16905964--16906047	43	2.0	43	80	4	98	39	5	4	50	1.48
16905943--16906223	22	12.7	22	71	9	151	39	7	6	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16906346--16906453	22	4.8	22	70	15	78	34	6	8	50	1.58
16906346--16906457	46	2.5	44	78	16	122	33	6	8	51	1.56
16906546--16906680	6	21.7	6	74	17	62	22	2	1	72	1.06
16906549--16906663	3	38.7	3	79	13	105	26	1	1	70	1.07
16906553--16906660	53	2.0	53	82	7	130	25	1	1	70	1.07
16907684--16907728	17	2.6	17	85	0	54	75	8	2	13	1.13
16908692--16908783	22	4.2	22	85	0	112	36	8	3	51	1.49
16908721--16908776	11	5.1	11	72	12	53	39	7	5	48	1.54
16909002--16909137	22	6.2	22	71	5	87	39	8	7	44	1.64
16909108--16909168	22	2.8	22	80	5	70	34	4	13	47	1.64
16909251--16909346	22	4.5	22	75	7	81	35	12	6	45	1.67
16909236--16909346	44	2.6	44	75	4	111	37	10	5	45	1.62
16909304--16909341	19	2.0	19	94	0	67	39	15	2	42	1.61
16909465--16909519	21	2.5	22	75	13	60	40	9	3	47	1.53
16909615--16909664	22	2.3	22	86	6	66	44	8	2	46	1.44
16909627--16909715	22	4.0	22	86	0	106	38	5	5	50	1.49
16909627--16909713	11	7.9	11	73	5	59	37	4	5	51	1.46
16909639--16909745	22	4.9	21	78	6	88	33	6	7	52	1.55
16909839--16909879	21	2.0	21	90	0	64	41	12	0	46	1.41
16909842--16909931	43	2.1	43	81	8	103	34	11	5	48	1.62
16909863--16909931	22	3.2	22	76	8	61	31	10	7	50	1.63
16915080--16915188	39	2.8	39	77	4	112	22	11	21	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16915388--16915452	3	21.7	3	82	6	78	29	1	0	69	0.98
16915400--16915456	30	1.9	30	88	0	87	29	1	0	68	1.00
16915587--16915633	21	2.2	21	80	0	58	61	2	8	27	1.36
16917535--16917603	8	8.9	8	79	9	54	2	2	14	79	0.96
16917844--16917912	29	2.4	29	85	0	84	33	17	20	28	1.95
16918054--16918158	33	3.2	33	83	1	131	27	15	17	40	1.89
16918016--16918269	129	2.0	130	84	0	339	29	15	18	36	1.92
16918272--16918305	17	2.0	17	88	0	50	17	17	17	47	1.84
16918402--16918466	33	2.0	33	81	6	78	40	12	7	40	1.71
16918760--16918821	27	2.2	29	80	8	74	32	19	20	27	1.97
16919756--16919850	8	11.0	8	70	11	55	3	20	1	75	0.99
16926190--16926246	13	4.4	13	77	0	60	15	7	21	56	1.63
16926568--16926614	21	2.2	21	84	0	67	59	2	10	27	1.42
16928793--16928832	20	2.0	21	85	5	55	60	5	10	25	1.49
16932496--16932641	46	3.2	47	81	4	156	32	8	17	41	1.79
16932563--16932668	47	2.2	48	80	8	119	36	11	12	39	1.79
16932774--16932958	17	10.9	17	66	6	52	34	14	7	44	1.73
16932821--16932860	18	2.2	18	86	8	55	22	17	12	47	1.81
16932979--16933096	18	6.7	18	77	3	96	29	14	8	47	1.73
16932939--16933091	70	2.2	71	80	6	161	29	14	9	47	1.75
16934714--16934774	32	1.9	32	89	0	95	22	32	18	26	1.97
16936814--16936862	17	3.1	16	77	16	57	46	0	2	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16937749--16938214	248	1.9	249	94	1	819	40	6	8	45	1.58
16951725--16951757	14	2.3	15	89	5	50	0	6	6	87	0.65
16952669--16953199	7	80.7	7	68	18	216	46	33	1	18	1.59
16952689--16952757	27	2.6	28	82	13	83	50	27	0	21	1.49
16952781--16953025	45	5.5	44	73	11	176	47	35	1	15	1.54
16952827--16953199	13	28.8	13	70	13	98	45	34	1	17	1.58
16952884--16953000	19	6.1	19	76	9	80	46	35	0	17	1.49
16952940--16953017	32	2.4	32	85	4	95	46	34	1	17	1.57
16952673--16953199	20	27.1	19	69	18	213	46	33	1	18	1.59
16952956--16953023	32	2.1	32	89	5	102	44	38	1	16	1.57
16952806--16953192	26	14.7	25	68	19	152	45	34	1	17	1.59
16952781--16953192	13	33.0	12	67	17	91	46	34	1	17	1.58
16953170--16953222	18	2.8	18	88	5	70	45	41	1	11	1.51
16954579--16954635	22	2.5	23	77	8	71	75	1	14	8	1.11
16955298--16955337	19	2.1	19	90	0	62	37	2	7	52	1.43
16957005--16957057	25	2.2	24	83	10	63	18	11	22	47	1.81
16957713--16957765	28	1.9	27	85	11	72	79	15	3	1	0.96
16960092--16960331	13	17.9	13	71	17	145	44	34	2	17	1.64
16960109--16960331	6	34.3	6	71	20	130	44	34	2	18	1.64
16960092--16960299	7	31.7	7	70	15	126	45	34	1	17	1.60
16962752--16962790	2	20.0	2	89	5	62	48	0	0	51	1.00
16966763--16966815	20	2.7	20	79	5	63	69	7	1	20	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16966819--16966866	22	2.2	22	84	0	60	70	0	8	20	1.12
16966826--16966908	15	5.3	15	67	17	53	65	2	6	26	1.28
16967085--16967137	19	2.8	19	76	0	52	32	0	5	62	1.19
16967048--16967130	28	2.9	28	73	8	69	26	2	6	65	1.28
16968207--16968262	3	18.7	3	96	0	103	32	1	0	66	1.03
16968760--16968837	29	2.7	29	76	9	88	12	2	20	64	1.40
16969193--16969249	16	3.5	16	72	13	53	5	8	3	82	0.93
16969215--16969284	29	2.4	30	80	9	81	14	5	2	77	1.07
16969180--16969274	49	1.9	50	83	10	124	9	9	2	78	1.03
16969351--16969384	16	2.1	17	88	5	52	20	5	8	64	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125