genome.fa.s46.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  103  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20268216--20268248	18	1.9	17	88	11	50	48	6	6	39	1.53
20268211--20268257	19	2.7	18	80	12	62	44	4	10	40	1.59
20267614--20268269	181	3.6	177	77	7	624	42	7	10	38	1.69
20268273--20269552	181	7.1	181	78	4	1168	41	9	7	40	1.68
20269563--20270458	180	4.9	180	77	6	733	41	9	8	40	1.68
20270493--20272576	180	11.6	178	78	7	1780	40	10	8	40	1.70
20270494--20272575	541	3.9	538	79	7	2036	40	10	8	40	1.70
20272349--20272819	243	1.9	243	81	4	574	41	10	7	41	1.66
20272592--20273917	181	7.5	180	74	9	979	41	9	8	40	1.67
20272623--20273682	355	3.0	351	81	5	1114	42	9	7	40	1.65
20274273--20274366	45	2.1	45	84	4	118	44	8	5	41	1.57
20274117--20274540	224	1.9	225	83	3	559	43	9	7	40	1.65
20274317--20275388	181	6.0	180	77	7	912	42	9	8	39	1.69
20275940--20278292	180	13.2	179	76	8	1887	42	9	7	39	1.67
20278319--20279218	181	5.0	180	76	2	667	42	10	8	39	1.69
20279218--20282435	181	18.0	181	77	6	2494	41	9	8	40	1.68
20282502--20286881	181	24.5	179	76	6	2877	41	9	8	39	1.69
20282502--20286878	361	12.2	359	76	7	3347	41	9	8	39	1.69
20286591--20287174	295	2.0	296	96	1	1073	46	9	7	36	1.66
20286875--20289804	181	16.4	177	73	11	1317	41	10	8	39	1.69
20286913--20287777	179	4.8	177	76	7	579	42	9	8	38	1.69
20286913--20289797	360	8.1	351	71	13	877	41	10	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20287631--20287932	155	1.9	156	87	2	446	42	10	9	38	1.71
20287787--20289804	181	11.2	180	76	7	1411	41	10	8	40	1.69
20287787--20289804	362	5.6	359	77	7	1684	41	10	8	40	1.69
20288562--20288594	18	1.9	17	88	11	50	39	6	6	48	1.53
20288932--20288964	17	2.0	17	88	5	50	39	12	0	48	1.40
20287860--20296426	900	9.4	899	71	12	2220	41	10	8	39	1.69
20287787--20296377	719	11.8	711	70	12	2232	41	10	8	39	1.69
20289819--20297408	181	42.3	181	73	10	4831	41	10	8	40	1.70
20293757--20296317	180	14.2	186	74	11	523	41	10	8	40	1.69
20297438--20297818	182	2.1	182	83	4	475	41	9	7	41	1.66
20297818--20297867	25	2.0	25	100	0	100	24	8	16	52	1.70
20297649--20298014	197	1.8	199	84	2	493	42	9	7	40	1.65
20298084--20299409	180	7.4	181	76	7	1109	43	10	8	37	1.70
20300318--20300641	176	1.8	175	79	7	379	41	9	8	41	1.67
20300494--20300924	180	2.4	179	77	10	409	43	9	7	39	1.65
20300903--20300971	35	2.0	35	91	8	115	47	5	10	36	1.61
20301504--20302570	179	6.0	177	76	7	825	41	8	8	42	1.65
20302255--20302296	21	2.0	20	86	4	57	59	2	7	30	1.37
20301506--20302569	358	3.0	354	78	8	991	41	8	8	42	1.65
20303762--20306024	181	13.3	178	71	15	1031	40	9	8	41	1.68
20304554--20305430	484	1.8	482	83	9	1130	42	9	6	41	1.64
20307019--20307051	17	2.0	17	88	5	50	33	12	6	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20306034--20311201	359	14.4	359	75	8	3489	41	9	8	40	1.68
20306490--20311201	180	26.2	182	76	7	3453	41	9	8	40	1.68
20311184--20311252	21	3.2	22	62	22	56	23	11	8	56	1.62
20311175--20311261	42	2.1	42	93	2	149	24	12	9	54	1.67
20311195--20311264	21	3.3	21	67	21	65	30	11	7	51	1.64
20311433--20311950	177	2.9	179	76	4	506	42	9	6	41	1.64
20311806--20312090	140	2.0	140	82	1	338	37	8	7	45	1.63
20312616--20313793	183	6.6	178	76	10	524	41	9	8	39	1.69
20312616--20313066	179	2.5	180	81	5	484	41	9	8	40	1.68
20314104--20318033	181	21.9	176	75	9	1573	41	9	8	40	1.68
20313865--20318021	540	7.7	532	76	9	2829	41	9	8	40	1.68
20313865--20318021	362	11.6	359	76	7	2952	41	9	8	40	1.68
20336210--20336273	21	3.1	20	71	6	56	34	42	10	12	1.78
20338195--20338220	9	2.9	9	100	0	52	42	11	11	34	1.77
20338439--20338478	21	1.9	21	89	0	62	5	30	32	32	1.79
20338634--20338714	41	2.0	41	95	0	144	17	19	17	45	1.85
20347243--20347316	3	26.0	3	76	15	50	66	1	1	31	1.09
20347252--20347318	27	2.5	27	87	2	100	68	1	1	28	1.07
20347243--20347316	13	5.4	14	69	11	64	66	1	1	31	1.09
20347480--20347862	39	9.8	38	80	4	329	40	22	12	24	1.88
20347502--20347896	116	3.4	116	83	3	444	41	22	11	24	1.87
20347824--20347895	33	2.2	33	84	0	90	37	22	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20359829--20359870	19	2.2	20	86	4	59	19	4	7	69	1.31
20360232--20360265	17	2.1	17	88	5	52	73	5	0	20	1.04
20360231--20360265	19	1.9	19	88	11	56	71	5	0	22	1.07
20371511--20371576	23	2.9	23	83	0	87	19	31	25	22	1.98
20371512--20371589	23	3.4	23	83	0	84	21	32	24	21	1.98
20372370--20373146	411	1.9	411	88	0	1160	24	19	21	34	1.97
20384563--20384640	23	3.4	23	78	0	75	23	30	23	23	1.99
20392924--20392975	24	2.2	24	85	0	68	28	38	15	17	1.90
20401902--20401930	14	2.0	15	93	6	51	13	34	24	27	1.93
20405167--20405196	15	1.9	16	93	6	53	10	10	33	46	1.71
20406755--20406792	19	1.9	19	89	5	58	34	13	31	21	1.91
20408766--20408983	104	2.1	104	92	0	355	32	15	28	23	1.95
20411978--20412010	17	1.9	17	93	0	57	42	27	12	18	1.85
20414030--20414079	23	2.2	23	100	0	100	20	34	14	32	1.92
20416942--20416990	21	2.3	22	82	7	64	10	18	36	34	1.85
20420632--20420685	23	2.3	23	87	0	72	18	14	38	27	1.90
20420655--20420748	45	2.1	45	85	0	125	20	25	27	26	1.99
20426815--20426920	45	2.3	45	83	4	124	19	23	25	31	1.98
20426922--20427039	44	2.7	44	84	1	148	27	24	22	25	2.00
20462503--20462532	15	1.9	16	93	6	53	6	10	36	46	1.64
20464089--20464126	19	1.9	19	89	5	58	34	13	31	21	1.91
20466100--20466321	104	2.1	104	92	0	363	31	13	29	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20474248--20474296	21	2.3	22	82	7	64	10	18	36	34	1.85
20479113--20479286	45	3.9	45	73	1	143	23	27	21	27	1.99
20481221--20481258	19	2.0	19	100	0	76	5	31	31	31	1.80
20491733--20491828	45	2.1	45	86	9	142	21	22	25	30	1.99
20491755--20491863	45	2.4	45	81	3	112	24	26	21	27	1.99
20492101--20492157	30	1.9	30	88	0	87	22	17	19	40	1.91
20497810--20497859	21	2.3	22	86	3	75	20	14	40	26	1.90
20512827--20512919	45	2.1	45	82	8	109	26	26	20	25	1.99
20529737--20529829	45	2.1	45	82	8	109	26	26	20	25	1.99
20544229--20544258	10	3.1	10	95	4	53	36	0	0	63	0.95
20544231--20544260	9	3.2	9	95	4	51	36	0	0	63	0.95
20544655--20544714	24	2.5	24	94	0	102	25	33	16	25	1.96
20550313--20550354	17	2.5	17	88	0	57	21	9	26	42	1.83
20550459--20550699	113	2.1	113	90	3	387	21	29	16	33	1.95
20552321--20552367	23	2.0	25	87	8	71	38	10	6	44	1.65
20552612--20553310	348	2.0	351	80	6	783	41	9	8	40	1.67
20552571--20553420	181	4.8	181	74	11	729	41	9	8	40	1.67
20553307--20553549	126	1.9	127	79	10	275	44	8	7	39	1.63
20555345--20555607	143	1.8	143	82	1	339	40	8	7	42	1.65
20555164--20555794	317	2.0	320	79	6	681	41	9	8	41	1.67
20555481--20556244	179	4.3	175	75	8	512	40	9	9	41	1.69
20556242--20557046	181	4.5	179	79	6	804	40	7	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20556944--20556984	16	2.3	18	88	12	59	51	2	2	43	1.28
20558358--20558601	113	2.2	114	89	1	366	33	17	28	21	1.96
20558701--20558742	17	2.5	17	88	0	57	42	26	9	21	1.83
20564766--20564795	9	3.2	9	95	4	51	63	0	0	36	0.95
20564768--20564797	10	3.1	10	95	4	53	63	0	0	36	0.95
20584051--20584573	159	3.3	159	77	4	525	20	26	29	24	1.99
20584549--20584599	26	2.0	26	92	0	84	29	29	13	27	1.94
20585258--20585309	25	2.0	26	92	3	88	28	26	19	25	1.98
20585442--20585492	26	2.0	26	88	0	75	29	27	17	25	1.98
20585232--20585653	184	2.3	184	81	4	465	22	28	25	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125