genome.fa.s46.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  44  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8780586--8780764	63	2.8	63	83	5	227	24	25	13	36	1.92
8781495--8781541	19	2.5	18	90	10	76	4	23	0	72	1.02
8781497--8781566	21	3.5	20	84	3	79	5	21	0	72	1.05
8787183--8787212	14	2.1	14	100	0	60	20	16	46	16	1.84
8787928--8787966	17	2.4	17	82	4	53	12	2	5	79	1.00
8788972--8789077	6	17.7	6	78	17	53	75	1	2	19	1.02
8788985--8789074	3	30.7	3	77	12	71	72	2	2	23	1.07
8788977--8789074	39	2.6	37	83	12	121	73	2	3	21	1.07
8788973--8789080	42	2.6	42	82	11	141	75	1	2	20	1.03
8789836--8789873	19	2.1	19	90	5	60	50	2	0	47	1.15
8790595--8790636	20	2.0	22	90	9	70	45	0	0	54	0.99
8790988--8791038	24	2.1	24	82	17	61	50	0	0	49	1.00
8794944--8794977	16	2.1	16	88	0	50	67	0	2	29	1.05
8807440--8807490	27	1.9	27	84	4	68	49	7	15	27	1.72
8818532--8818591	28	2.1	28	93	0	102	53	3	20	23	1.60
8825624--8825658	15	2.2	16	90	5	54	85	0	11	2	0.69
8826342--8826400	19	3.2	19	86	9	79	55	0	0	44	0.99
8826344--8826405	27	2.3	27	88	2	90	53	0	0	46	1.00
8826352--8826406	19	2.8	20	89	5	78	52	0	0	47	1.00
8826770--8826821	21	2.5	21	90	6	79	50	0	0	50	1.00
8826770--8826821	22	2.5	22	93	6	90	50	0	0	50	1.00
8826806--8826845	16	2.7	14	88	7	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8826811--8826846	8	4.5	8	85	0	54	55	0	0	44	0.99
8839732--8839818	18	4.8	19	83	5	92	31	5	26	36	1.80
8839847--8839881	18	1.9	18	88	0	52	42	8	25	22	1.82
8840215--8840267	6	8.8	6	93	0	88	32	47	0	20	1.51
8846166--8846202	3	12.3	3	100	0	74	35	0	0	64	0.94
8848073--8848136	26	2.6	25	81	16	71	50	1	0	48	1.10
8848604--8848650	22	2.1	22	84	7	60	59	0	0	40	0.97
8849935--8849979	7	6.1	7	87	7	63	57	0	0	42	0.98
8849957--8850017	14	4.3	14	76	16	54	52	0	0	47	1.00
8855434--8855458	2	12.5	2	100	0	50	0	48	0	52	1.00
8859997--8860044	2	24.0	2	91	0	51	50	10	0	39	1.37
8859997--8860052	28	2.0	28	92	0	94	50	14	0	35	1.43
8862273--8862308	2	18.0	2	100	0	72	50	0	0	50	1.00
8866090--8866122	1	33.0	1	100	0	66	0	0	0	100	0.00
8871878--8871928	2	25.5	2	87	0	75	50	0	5	43	1.26
8873038--8873069	2	16.0	2	100	0	64	50	0	0	50	1.00
8875720--8875768	25	2.0	25	87	0	71	36	22	8	32	1.84
8903099--8903143	18	2.4	18	77	3	54	53	2	0	44	1.13
8903084--8903150	31	2.1	31	81	8	73	46	1	1	50	1.19
8903124--8903156	14	2.5	13	90	9	50	54	0	3	42	1.15
8903419--8903457	11	3.5	11	82	0	51	38	0	2	58	1.12
8908110--8908148	18	2.1	19	85	4	53	23	7	7	61	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8919410--8919689	144	1.9	145	97	0	535	38	7	4	48	1.52
8919828--8919860	16	2.0	17	94	5	59	48	3	0	48	1.17
8919891--8919932	17	2.4	19	76	19	54	45	0	0	54	0.99
8919892--8919932	20	2.1	19	86	4	55	43	0	0	56	0.99
8920507--8920551	19	2.4	19	81	3	56	57	6	0	35	1.25
8931826--8931883	19	3.3	19	67	18	61	41	6	3	48	1.47
8933278--8933315	20	1.9	20	89	10	60	28	18	15	36	1.92
8933398--8933424	2	13.5	2	100	0	54	48	0	51	0	1.00
8933846--8934132	102	2.8	103	82	6	341	41	8	11	39	1.71
8938759--8938793	18	2.0	17	94	5	61	62	0	25	11	1.28
8949038--8949148	59	1.9	59	87	7	165	42	15	21	20	1.89
8949685--8949718	18	1.9	18	88	5	52	44	5	5	44	1.52
8957789--8957874	29	2.9	29	77	6	75	44	8	0	47	1.32
8957913--8957957	23	1.9	24	86	13	67	55	2	6	35	1.38
8969872--8969927	26	2.2	26	83	6	69	23	3	0	73	0.99
8970617--8970646	2	15.0	2	100	0	60	50	0	0	50	1.00
8971290--8971314	9	2.8	9	100	0	50	12	0	16	72	1.13
8977031--8977074	18	2.4	18	100	0	88	27	22	27	22	1.99
8981603--8981652	23	2.3	22	83	12	68	52	6	2	40	1.38
8983166--8983202	7	5.6	7	81	12	51	37	0	0	62	0.96
8988093--8988120	2	14.0	2	100	0	56	50	0	0	50	1.00
8988183--8988227	19	2.3	20	81	11	58	62	11	4	22	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9006095--9006136	13	3.2	13	83	16	59	42	2	0	54	1.13
9007505--9007542	20	1.9	20	84	10	51	23	2	10	63	1.39
9010409--9010444	17	2.1	18	89	5	56	30	2	0	66	1.06
9010398--9010449	27	1.9	27	88	0	77	32	3	0	63	1.12
9011099--9011143	15	3.4	14	77	17	51	31	2	0	66	1.04
9011733--9011811	29	2.6	30	82	4	88	50	0	3	45	1.19
9015159--9015215	29	2.0	29	86	6	80	3	36	15	43	1.64
9017591--9017673	29	2.9	29	94	0	139	27	9	12	50	1.70
9023967--9024005	20	2.0	20	85	10	53	43	2	0	53	1.14
9024674--9024741	28	2.5	28	81	11	79	50	0	1	48	1.10
9027731--9027804	37	2.0	37	100	0	148	27	5	8	59	1.48
9035057--9035109	18	2.9	18	82	2	61	43	1	9	45	1.47
9039733--9039767	16	2.1	17	89	5	54	37	5	2	54	1.39
9039730--9039770	17	2.4	18	84	12	59	39	4	2	53	1.35
9040991--9041032	20	2.0	21	82	13	52	33	4	0	61	1.17
9047768--9047920	62	2.5	62	83	5	175	33	11	21	33	1.90
9052111--9052149	13	3.0	13	80	0	51	41	0	0	58	0.98
9053162--9053241	29	2.8	28	80	3	88	40	2	2	55	1.27
9054600--9054822	111	2.0	113	94	2	396	29	14	4	51	1.63
9055548--9055576	2	14.5	2	100	0	58	51	0	0	48	1.00
9059564--9059597	13	2.6	14	86	13	54	58	2	0	38	1.13
9059579--9059610	16	2.1	15	94	5	55	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9059759--9059817	18	3.3	18	75	17	61	50	3	1	44	1.28
9060374--9060415	18	2.3	18	87	4	66	30	0	2	66	1.04
9060532--9060589	26	2.2	27	87	3	82	44	3	3	48	1.36
9061022--9061062	8	5.4	8	82	11	50	65	0	2	31	1.05
9061020--9061062	15	2.9	15	85	0	59	65	0	2	32	1.06
9061894--9061929	9	4.0	9	88	0	54	38	33	27	0	1.57
9062357--9062427	3	23.7	3	88	0	106	61	0	38	0	0.96
9080933--9081422	247	2.0	249	82	4	596	34	11	14	39	1.82
9087500--9087582	41	2.0	41	92	0	139	31	8	13	46	1.72
9089524--9089558	17	2.0	18	94	5	63	74	8	0	17	1.06
9091053--9091099	2	23.5	2	95	0	85	51	0	48	0	1.00
9091209--9091383	86	2.0	86	98	0	341	29	27	17	25	1.98
9091439--9091479	20	2.0	21	90	4	66	36	2	4	56	1.34
9095033--9095249	62	3.5	61	82	11	232	37	13	6	42	1.70
9095099--9095249	58	2.5	57	84	9	160	38	14	5	41	1.70
9095267--9095325	4	14.0	4	77	19	50	76	0	3	20	0.93
9095267--9095342	19	4.1	19	80	15	88	76	0	3	19	0.94
9095281--9095342	29	2.2	28	85	5	88	77	0	3	19	0.90
9095268--9095386	23	5.2	23	70	17	88	73	3	2	20	1.09
9096252--9096291	11	3.5	12	75	25	50	62	5	5	27	1.37
9096230--9096291	22	3.0	21	82	17	78	66	4	4	24	1.31
9096362--9096421	14	4.3	14	76	21	54	75	1	3	20	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9096376--9096446	17	4.1	16	71	18	52	78	1	2	16	0.94
9096362--9096446	13	6.4	14	72	18	58	76	2	3	17	1.04
9097303--9097740	228	1.9	228	88	1	664	34	18	13	34	1.89
9099738--9099784	22	2.2	22	85	7	62	59	10	2	27	1.42
9100829--9100899	29	2.4	29	84	9	99	54	4	9	30	1.52
9100827--9100909	29	2.9	28	78	10	87	53	4	8	33	1.53
9101854--9101895	5	8.0	5	94	5	66	80	0	0	19	0.70
9102054--9102108	26	2.3	23	82	14	67	58	3	3	34	1.33
9102047--9102107	25	2.4	25	84	10	72	57	3	3	36	1.31
9105073--9105120	25	1.9	25	100	0	96	16	25	10	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125