genome.fa.s46.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  81  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16251986--16252104	60	2.0	60	88	8	181	35	15	14	34	1.88
16252046--16252350	84	3.5	86	79	8	286	38	16	14	31	1.88
16252046--16252364	42	7.4	42	74	10	225	37	16	13	31	1.88
16258063--16258124	29	2.1	29	100	0	124	32	3	30	33	1.74
16258704--16258753	14	3.5	14	80	2	55	10	0	8	82	0.86
16259046--16259128	35	2.4	35	83	4	96	46	12	21	19	1.82
16259063--16259157	35	2.7	35	80	0	100	53	12	13	20	1.72
16259223--16259336	35	3.3	35	81	6	133	50	8	21	20	1.75
16259391--16259481	35	2.6	35	70	19	82	51	12	16	19	1.75
16259924--16260015	35	2.6	33	76	17	96	47	11	22	17	1.80
16259978--16260110	70	1.9	70	80	9	155	52	12	15	18	1.74
16260022--16260111	35	2.6	35	82	7	103	55	11	14	18	1.68
16261282--16261378	45	2.2	45	88	3	142	31	17	20	29	1.96
16261261--16261378	23	5.2	23	72	8	82	33	18	17	30	1.95
16261345--16261406	23	2.7	23	84	0	70	29	12	24	33	1.92
16261743--16261805	33	1.9	32	84	15	85	15	15	1	66	1.33
16268601--16268724	8	15.4	8	73	8	90	16	2	31	49	1.59
16268600--16268733	33	4.2	31	75	12	101	16	2	32	48	1.61
16268600--16268708	33	3.3	32	78	11	107	17	1	31	49	1.57
16268638--16268724	25	3.6	24	77	10	97	18	2	31	48	1.61
16270794--16270839	16	3.0	15	84	9	58	17	6	0	76	1.00
16271635--16271699	18	3.7	18	74	11	55	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16271718--16271786	29	2.4	29	92	0	111	40	2	1	55	1.24
16271750--16271814	27	2.5	26	78	9	69	43	0	1	55	1.09
16271717--16271809	29	3.2	29	70	21	70	41	2	1	54	1.19
16272367--16272408	15	2.7	15	88	3	57	4	7	9	78	1.08
16272551--16272583	10	3.3	10	100	0	66	27	0	0	72	0.85
16274089--16274113	4	6.2	4	100	0	50	76	0	24	0	0.80
16275389--16275441	20	2.6	21	77	14	58	62	5	9	22	1.47
16276214--16276518	101	3.1	98	83	6	382	38	9	8	43	1.68
16276649--16276681	16	2.0	17	88	5	50	69	3	3	24	1.16
16277425--16277462	14	2.8	14	96	4	69	0	0	10	89	0.49
16277448--16277497	17	2.9	17	80	19	59	2	10	6	82	0.92
16277431--16277497	35	1.9	35	84	6	91	1	7	7	83	0.87
16277424--16277459	8	4.8	8	86	13	58	0	0	11	88	0.50
16277434--16277498	18	3.7	18	79	10	71	1	7	7	83	0.88
16277657--16277913	84	3.0	83	83	2	273	38	13	13	33	1.84
16277657--16277948	84	3.5	84	82	4	259	38	14	13	33	1.85
16284415--16284700	99	2.8	99	82	5	324	39	8	9	41	1.69
16287179--16287207	11	2.7	11	94	5	51	48	0	0	51	1.00
16288280--16288308	11	2.5	12	88	11	51	17	0	6	75	1.01
16288567--16288612	3	15.3	3	100	0	92	32	0	0	67	0.91
16289385--16289425	16	2.5	17	76	11	50	41	0	0	58	0.98
16289597--16289630	6	5.7	6	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16292088--16292559	115	4.2	113	73	12	307	48	6	10	34	1.64
16292463--16292554	40	2.3	40	79	7	98	46	4	13	35	1.62
16292568--16292642	37	2.0	37	84	5	98	45	8	1	45	1.41
16293024--16293065	16	2.5	17	92	3	68	16	30	0	52	1.44
16298124--16298219	3	34.3	3	74	17	73	31	4	2	62	1.26
16299065--16299116	21	2.5	20	81	9	59	25	1	1	71	1.07
16309786--16309810	12	2.1	12	100	0	50	92	8	0	0	0.40
16311158--16311241	35	2.4	37	78	13	95	38	2	9	50	1.48
16311276--16311413	3	48.3	3	77	12	112	33	5	1	59	1.30
16311898--16311927	14	2.1	15	93	6	53	30	3	20	46	1.66
16312263--16312316	21	2.5	21	87	6	72	20	5	1	72	1.14
16313645--16313689	20	2.2	21	84	11	58	48	24	2	24	1.62
16313679--16313726	18	2.6	19	80	3	53	50	25	2	22	1.60
16315369--16315421	17	3.1	17	78	8	63	81	7	5	5	1.00
16315369--16315420	16	3.1	16	80	5	59	80	7	5	5	1.01
16316245--16316282	13	2.8	13	81	18	51	71	2	13	13	1.26
16316384--16316454	29	2.3	31	79	16	85	52	1	2	43	1.24
16316376--16316457	29	2.9	29	73	21	77	51	1	2	45	1.22
16317486--16317539	20	2.7	20	88	0	72	27	12	14	44	1.82
16319904--16320182	138	2.0	138	98	0	540	41	15	15	28	1.87
16322159--16322198	20	2.0	20	85	9	55	62	10	0	27	1.27
16326817--16326862	9	5.2	9	77	15	51	78	8	8	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16326784--16326875	16	5.8	16	72	8	55	78	7	8	5	1.09
16326941--16326976	10	3.5	10	85	7	54	75	0	2	22	0.94
16366846--16366877	13	2.4	14	85	15	50	40	21	9	28	1.84
16367359--16367403	3	15.0	3	100	0	90	66	0	0	33	0.92
16369429--16369466	2	19.0	2	94	0	67	50	2	0	47	1.15
16369539--16369582	21	2.1	21	86	0	61	22	36	13	27	1.92
16374951--16374997	11	4.4	11	76	13	53	70	2	2	25	1.10
16375088--16375177	43	2.1	44	87	4	130	53	3	1	42	1.24
16375101--16375194	42	2.2	41	81	9	100	57	4	1	37	1.25
16383425--16383449	6	4.2	6	100	0	50	68	16	0	16	1.22
16385067--16385119	21	2.4	22	90	6	81	52	0	0	47	1.00
16386986--16387047	30	2.1	30	90	0	97	20	30	20	27	1.98
16387991--16388032	21	2.0	21	95	0	75	50	4	11	33	1.60
16388904--16388929	4	6.5	4	100	0	52	50	0	0	50	1.00
16391311--16391361	3	17.0	3	91	0	84	64	1	1	31	1.15
16391542--16391921	49	7.9	49	81	7	366	36	20	12	31	1.90
16391542--16391921	96	3.9	96	80	8	351	36	20	12	31	1.90
16403418--16403474	18	3.3	17	78	9	53	75	1	19	3	1.04
16403404--16403473	13	4.9	15	72	20	53	77	1	18	2	0.97
16404861--16404905	23	2.0	23	95	0	81	8	6	6	77	1.11
16405284--16405353	33	2.2	30	80	12	77	20	0	31	48	1.50
16405281--16405384	52	2.0	52	86	0	145	20	0	31	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16405204--16405345	40	3.6	41	73	9	123	21	0	29	49	1.50
16405253--16405501	45	5.5	46	73	9	172	18	0	32	48	1.53
16405223--16405390	21	8.7	20	67	18	79	19	0	29	51	1.47
16405427--16405520	39	2.4	38	85	5	118	19	1	30	48	1.55
16405453--16405519	19	3.5	19	79	4	80	16	1	31	50	1.54
16409022--16409055	16	2.0	18	88	11	54	82	0	5	11	0.83
16410031--16410059	12	2.4	12	100	0	58	0	6	0	93	0.36
16411712--16412175	240	1.9	239	94	0	820	34	18	11	35	1.87
16419025--16419075	19	2.5	20	78	9	59	60	19	5	13	1.53
16419466--16419627	3	54.3	3	68	19	90	60	1	4	33	1.27
16419483--16419628	17	8.9	17	70	25	75	58	2	4	34	1.28
16419476--16419638	45	3.8	44	75	21	141	58	2	3	34	1.29
16421235--16421431	92	2.1	90	78	4	205	20	20	11	46	1.82
16421435--16421469	11	3.3	10	88	11	52	14	0	2	82	0.77
16421428--16421469	21	2.0	21	86	9	59	11	0	7	80	0.88
16421438--16421467	16	1.9	16	93	6	53	10	0	3	86	0.67
16424170--16424773	47	12.9	46	84	6	720	35	25	13	26	1.93
16424170--16424773	93	6.5	92	85	6	720	35	25	13	26	1.93
16428540--16428982	59	7.3	60	83	9	521	33	13	7	44	1.72
16428999--16429063	15	4.2	15	78	11	69	80	1	4	13	0.95
16429952--16430112	6	26.2	6	69	23	54	67	3	1	27	1.18
16429952--16430084	17	7.9	17	69	23	63	65	3	1	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16430053--16430124	16	4.6	15	77	18	67	73	4	1	20	1.07
16430320--16430613	41	7.1	41	92	3	457	35	24	16	23	1.95
16431847--16431889	22	2.0	22	86	9	61	11	18	0	69	1.17
16435805--16436307	58	8.6	57	86	8	647	35	12	6	45	1.69
16436322--16436382	17	3.8	15	79	14	68	80	0	6	13	0.90
16436320--16436384	24	2.7	23	83	9	69	80	0	6	13	0.90
16436412--16436441	9	3.3	9	95	0	51	80	6	0	13	0.91
16437270--16437319	17	2.8	17	75	24	50	64	4	2	30	1.23
16437308--16437419	41	2.9	38	76	10	118	66	5	3	24	1.28
16437365--16437438	16	4.5	15	75	20	60	71	4	2	21	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125