genome.fa.s46.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  67  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13230369--13230526	63	2.5	62	77	11	153	33	19	10	36	1.87
13230369--13230526	62	2.5	63	77	9	164	33	19	10	36	1.87
13234064--13234088	7	3.6	7	100	0	50	48	36	0	16	1.46
13234799--13234971	63	2.7	63	75	7	188	36	13	16	34	1.87
13235421--13235488	26	2.4	30	76	13	74	47	1	1	50	1.19
13237068--13237246	89	2.0	90	92	4	301	37	16	12	33	1.86
13238010--13238048	19	2.1	19	85	0	51	28	7	20	43	1.79
13238021--13238081	19	3.2	18	75	9	59	22	11	24	40	1.87
13238104--13238160	25	2.2	26	87	3	80	15	5	26	52	1.64
13238104--13238159	13	4.4	13	77	4	60	16	5	26	51	1.65
13240781--13240838	27	2.2	25	80	17	64	0	0	18	81	0.70
13240798--13240840	13	3.2	13	90	3	68	0	0	16	83	0.64
13240794--13240836	16	2.7	15	86	13	59	0	0	13	86	0.58
13240795--13240839	23	2.0	23	90	0	72	0	0	13	86	0.57
13240882--13240990	36	3.0	36	73	7	121	51	14	15	18	1.77
13241059--13241258	72	2.8	71	82	5	213	48	11	21	19	1.79
13241067--13241320	71	3.5	71	79	4	233	47	12	21	18	1.82
13241275--13241351	40	1.9	40	86	0	109	49	18	18	14	1.80
13241328--13241401	37	2.0	37	89	0	112	47	14	17	20	1.83
13241425--13241489	22	2.9	22	73	13	60	23	15	23	38	1.92
13242608--13242655	19	2.5	18	74	12	51	12	12	0	75	1.06
13243003--13243054	7	8.0	7	74	21	51	0	25	1	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13249073--13249111	20	1.9	20	94	5	69	48	7	17	25	1.74
13250977--13251111	7	20.0	7	75	17	99	42	37	0	19	1.51
13251035--13251106	20	3.5	20	89	10	103	41	41	0	16	1.48
13251008--13251097	27	3.3	28	83	11	100	45	36	0	17	1.49
13253317--13253355	20	2.0	20	84	0	51	58	12	7	20	1.58
13253626--13254033	144	2.9	143	80	5	418	33	15	11	39	1.84
13254395--13254419	11	2.3	11	100	0	50	92	0	8	0	0.40
13255583--13256128	218	2.5	219	84	2	697	40	8	14	36	1.75
13260522--13260554	14	2.4	14	85	5	50	12	12	6	69	1.35
13269911--13270449	218	2.4	221	84	5	668	37	13	8	41	1.75
13272036--13272433	143	2.8	143	80	6	423	39	12	15	32	1.84
13274720--13275273	184	3.0	184	97	0	1054	42	12	18	26	1.86
13275313--13275427	7	16.7	7	73	13	69	21	0	34	42	1.59
13275310--13275374	21	3.1	21	78	12	80	20	0	40	40	1.52
13275313--13275411	15	6.6	15	72	17	62	20	1	33	45	1.58
13275282--13275392	13	8.5	13	71	16	79	17	1	37	43	1.59
13275600--13275633	16	2.1	16	88	0	50	76	8	0	14	1.01
13276776--13277112	144	2.4	141	78	10	314	37	16	12	33	1.86
13277305--13277343	20	1.9	21	89	5	62	28	20	5	46	1.72
13277331--13277372	20	2.1	20	86	0	57	26	14	4	54	1.59
13284254--13284666	146	2.8	146	78	7	369	32	15	13	39	1.85
13284254--13284666	145	2.8	146	78	6	412	32	15	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13292950--13293011	1	62.0	1	73	0	52	3	1	8	87	0.72
13292952--13293011	27	2.2	27	85	5	77	3	1	8	86	0.74
13292958--13293012	23	2.3	23	84	3	74	3	1	9	85	0.79
13292950--13293011	16	3.9	15	80	16	63	3	1	8	87	0.72
13292958--13293010	11	4.6	11	86	6	70	1	1	9	86	0.71
13293018--13293356	41	8.1	41	93	2	543	34	23	17	23	1.96
13293018--13293356	83	4.1	82	93	2	543	34	23	17	23	1.96
13294616--13294662	21	2.2	21	88	7	69	6	12	0	80	0.88
13295054--13295084	13	2.5	12	90	10	53	0	9	0	90	0.46
13298614--13298889	58	4.7	56	79	11	279	34	13	7	43	1.73
13298905--13298946	22	1.9	22	85	9	59	71	2	11	14	1.24
13298928--13299024	17	6.1	16	68	17	69	76	2	5	16	1.06
13299930--13300077	23	6.9	21	70	24	87	67	2	1	29	1.10
13299970--13300146	4	44.2	4	67	20	61	66	2	1	29	1.13
13299907--13300049	55	2.5	55	79	6	144	68	0	2	27	1.08
13299972--13300199	25	8.8	25	70	19	107	69	3	1	25	1.13
13299930--13300176	81	3.1	78	77	10	205	67	2	2	27	1.17
13300133--13300190	15	3.8	15	74	19	57	79	3	1	15	0.95
13300160--13300197	18	2.1	19	85	5	51	84	2	2	10	0.83
13300859--13301046	98	1.9	98	79	8	213	51	5	4	38	1.46
13302837--13302874	14	2.7	15	88	8	53	52	2	0	44	1.14
13304244--13304344	36	2.8	35	90	3	148	30	13	7	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13305961--13305985	13	1.9	13	100	0	50	64	0	0	36	0.94
13306016--13306218	108	1.9	109	89	3	320	40	5	21	33	1.76
13313419--13313480	30	2.1	30	90	0	97	43	3	20	32	1.68
13315046--13315183	49	2.8	49	77	8	143	33	7	18	40	1.78
13315680--13315745	26	2.7	24	77	11	71	13	6	4	75	1.14
13319710--13319743	12	2.8	12	86	0	50	82	8	8	0	0.85
13319597--13319756	78	2.0	78	82	8	191	58	10	16	13	1.62
13319574--13319753	77	2.3	77	77	12	197	60	9	16	13	1.58
13319597--13319782	78	2.4	78	79	8	173	54	11	18	15	1.71
13320046--13320096	26	2.0	24	88	7	75	82	1	9	5	0.91
13320837--13321206	121	3.1	118	77	6	357	18	21	13	45	1.84
13321227--13321265	17	2.3	17	90	0	60	17	23	7	51	1.71
13321334--13321584	86	2.9	84	81	4	236	26	17	17	38	1.92
13321527--13321569	17	2.5	17	88	0	59	20	23	16	39	1.92
13322753--13322782	6	4.8	6	95	4	51	83	0	3	13	0.77
13325424--13325475	3	17.3	3	91	0	86	36	1	30	30	1.69
13329565--13329927	158	2.3	159	80	6	412	34	8	18	38	1.82
13329817--13330044	117	1.9	117	83	1	287	37	9	17	35	1.82
13334980--13335025	20	2.3	20	81	3	58	67	15	0	17	1.24
13334979--13335024	19	2.4	19	82	10	58	65	15	0	19	1.28
13335022--13335066	21	2.1	22	83	4	56	68	15	0	15	1.21
13335034--13335096	33	2.0	33	90	6	103	65	14	0	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13338042--13338074	17	1.9	17	93	0	57	66	12	0	21	1.23
13342797--13342843	23	2.0	23	100	0	94	36	4	17	42	1.68
13343794--13344335	144	3.8	140	78	9	494	41	9	13	35	1.77
13343919--13344327	136	2.9	141	79	10	433	43	9	12	34	1.75
13344831--13344928	40	2.6	38	84	7	135	38	21	14	25	1.91
13344810--13344927	37	3.1	38	81	4	130	38	21	13	26	1.90
13344913--13345163	105	2.4	105	84	2	299	34	15	15	34	1.89
13345227--13345267	22	1.9	21	85	5	55	26	17	24	31	1.97
13345750--13345899	44	3.5	41	71	9	106	36	13	18	32	1.89
13345956--13345984	15	1.9	15	100	0	58	41	13	24	20	1.89
13347327--13347387	10	6.3	10	81	14	74	9	6	1	81	0.92
13347327--13347386	9	6.3	9	83	12	59	10	6	1	81	0.93
13356505--13356556	23	2.3	22	80	9	61	5	19	9	65	1.42
13356505--13356555	22	2.3	22	83	12	61	5	19	9	64	1.44
13356972--13357344	145	2.6	145	79	5	396	41	10	14	33	1.80
13357346--13357384	12	3.0	13	88	7	53	46	35	0	17	1.49
13357346--13357388	7	6.4	7	86	10	54	46	34	0	18	1.50
13357361--13357402	19	2.2	19	83	8	50	45	42	2	9	1.49
13361790--13361838	17	3.0	17	85	8	66	12	10	10	67	1.43
13361792--13361825	8	4.4	8	92	7	61	11	11	11	64	1.50
13366676--13366731	10	5.7	10	74	4	51	7	8	1	82	0.92
13372091--13372138	24	2.0	24	91	0	78	39	10	27	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13373050--13373083	16	2.1	17	88	5	52	11	5	8	73	1.24
13373958--13374018	29	2.1	28	84	9	77	21	3	18	57	1.54
13374855--13374889	17	2.1	17	88	0	52	14	5	8	71	1.29
13381067--13381093	14	1.9	14	100	0	54	59	0	3	37	1.15
13381046--13381167	57	2.1	59	90	4	196	61	0	1	36	1.12
13381123--13381152	14	2.1	14	93	0	51	66	3	0	30	1.07
13387325--13387395	35	2.0	35	88	0	106	28	11	18	42	1.84
13395087--13395157	35	2.0	35	91	0	115	26	8	21	43	1.81
13404736--13404780	22	2.0	22	91	0	72	44	20	11	24	1.83
13405257--13405297	14	2.9	14	92	3	64	51	2	14	31	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125