genome.fa.s13.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  10  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1207076--1207473	110	3.6	109	79	5	419	21	18	17	42	1.89
1207352--1207395	22	2.0	22	86	0	61	27	18	15	38	1.91
1207609--1207708	37	2.7	37	80	0	128	18	21	13	48	1.81
1207889--1207925	3	12.3	3	100	0	74	67	0	0	32	0.91
1207948--1207982	11	3.3	11	88	8	54	80	2	17	0	0.84
1218926--1218990	6	10.8	6	96	0	94	33	9	0	56	1.31
1218919--1219001	9	8.3	10	82	7	57	31	7	0	61	1.23
1219800--1219855	7	7.7	7	79	15	60	23	3	1	71	1.11
1219815--1219875	21	2.8	20	87	9	77	22	1	4	70	1.15
1219842--1219899	12	4.7	12	75	21	57	20	1	3	74	1.06
1219865--1219900	17	2.1	17	89	0	54	19	2	0	77	0.88
1219849--1219900	26	2.0	26	85	7	70	19	1	3	75	1.06
1220181--1220208	13	2.2	13	100	0	56	39	0	21	39	1.54
1233554--1233596	2	21.5	2	90	0	68	46	0	0	53	1.00
1235592--1235632	2	20.5	2	89	0	55	43	0	4	51	1.23
1239299--1239324	2	13.0	2	100	0	52	50	0	0	50	1.00
1245273--1245314	21	2.0	21	85	0	57	26	2	2	69	1.13
1246808--1246888	30	2.7	29	80	16	94	46	4	9	38	1.59
1248139--1248177	20	2.0	20	85	10	53	71	10	2	15	1.23
1253260--1253365	54	2.0	54	86	0	149	26	29	12	32	1.92
1256898--1257037	68	2.0	69	86	4	192	48	12	19	20	1.80
1259324--1259374	2	27.0	2	80	11	54	41	3	1	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1264942--1265036	31	3.1	31	82	0	100	44	14	4	36	1.65
1265170--1265261	14	6.6	14	67	16	50	47	4	0	47	1.21
1265161--1265243	43	1.9	43	83	9	107	45	4	0	49	1.23
1266131--1266178	19	2.5	19	80	16	62	47	6	4	41	1.48
1267406--1267431	2	13.0	2	100	0	52	50	0	0	50	1.00
1269403--1269493	34	2.6	35	87	5	130	32	6	6	53	1.53
1272065--1272176	56	2.0	56	87	0	161	26	31	15	26	1.96
1273422--1273474	21	2.5	21	90	9	81	50	0	0	49	1.00
1273460--1273500	8	5.2	8	85	2	57	58	0	0	41	0.98
1278376--1278401	3	8.7	3	100	0	52	0	0	65	34	0.93
1287860--1287892	17	2.0	16	94	5	57	45	0	0	54	0.99
1290598--1290674	31	2.5	31	89	0	118	15	24	2	57	1.51
1302115--1302150	17	2.1	17	94	0	63	55	11	8	25	1.62
1305467--1305491	2	12.5	2	100	0	50	48	0	0	52	1.00
1310194--1310230	6	6.2	6	100	0	74	51	16	32	0	1.45
1315368--1315450	42	2.0	42	90	4	132	28	27	22	20	1.99
1318923--1319255	131	2.5	129	79	7	348	45	7	6	40	1.58
1319624--1319654	2	15.5	2	93	0	53	45	0	3	51	1.17
1325260--1325350	44	2.2	42	81	13	107	34	1	4	60	1.24
1326094--1326490	196	2.0	197	98	0	760	32	19	16	31	1.94
1326883--1326908	2	13.0	2	100	0	52	50	0	0	50	1.00
1327033--1327060	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327060--1327088	2	14.5	2	100	0	58	48	0	0	51	1.00
1327895--1327943	23	2.0	26	84	11	68	67	12	0	20	1.22
1331032--1331545	256	2.0	256	97	0	974	35	21	13	29	1.92
1333260--1333293	18	1.9	17	94	5	59	0	26	0	73	0.83
1333759--1333784	1	26.0	1	100	0	52	0	100	0	0	0.00
1334115--1334152	2	19.0	2	100	0	76	50	0	0	50	1.00
1335218--1335275	31	1.9	30	89	3	89	48	0	5	46	1.24
1335477--1335544	14	5.0	14	70	12	52	54	1	0	44	1.09
1336953--1336990	2	19.0	2	94	0	67	52	0	0	47	1.00
1337569--1337601	2	16.5	2	93	0	57	48	0	0	51	1.00
1339672--1339696	3	8.3	3	100	0	50	32	0	0	68	0.90
1342682--1342719	13	2.8	13	92	4	58	84	13	2	0	0.73
1348989--1349041	27	1.9	28	84	3	72	49	1	0	49	1.12
1351437--1351620	63	2.9	63	85	4	239	39	16	15	28	1.89
1352078--1352102	13	1.9	13	100	0	50	24	16	12	48	1.79
1357026--1357116	14	6.4	14	80	14	89	49	27	3	19	1.64
1357017--1357116	29	3.5	28	78	8	96	50	26	4	20	1.66
1357137--1357219	41	2.0	41	83	0	103	46	25	2	25	1.64
1357184--1357250	31	2.2	31	83	5	82	44	26	4	23	1.72
1363620--1363653	17	1.9	17	88	5	50	70	0	23	5	1.09
1364515--1364601	32	2.8	32	75	8	90	36	18	12	32	1.88
1364658--1364731	31	2.4	31	88	2	112	35	18	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364540--1364831	138	2.1	138	87	1	404	33	19	16	30	1.94
1365226--1365312	33	2.7	32	80	5	93	27	19	14	37	1.91
1365387--1365452	33	2.0	34	85	5	91	43	13	9	33	1.76
1365540--1365687	33	4.5	33	80	0	163	34	16	13	35	1.88
1365540--1365728	66	2.9	66	89	2	274	34	15	13	36	1.87
1365517--1365727	99	2.1	98	80	4	228	33	16	13	36	1.88
1366144--1366230	36	2.5	35	83	5	95	21	12	6	58	1.57
1366172--1366255	35	2.4	36	78	8	91	22	11	7	58	1.58
1366275--1366322	18	2.6	18	87	9	62	81	8	0	10	0.88
1366276--1366322	12	3.8	12	80	8	51	82	8	0	8	0.83
1368265--1368386	14	8.3	14	68	13	50	49	23	3	23	1.65
1370419--1370449	12	2.7	11	90	9	53	61	0	0	38	0.96
1370407--1370446	18	2.3	17	86	4	53	65	0	0	35	0.93
1375975--1376057	3	27.0	3	70	9	51	59	2	2	36	1.24
1375975--1376056	12	6.4	12	73	13	65	58	2	2	36	1.24
1377030--1377076	18	2.7	17	78	15	51	21	0	6	72	1.07
1377475--1377536	16	3.9	16	79	8	72	46	32	0	20	1.51
1377483--1377535	16	3.2	17	84	10	83	47	30	0	22	1.52
1377476--1377536	32	1.9	31	96	3	113	45	32	0	21	1.52
1377798--1377824	14	1.9	14	100	0	54	51	0	0	48	1.00
1378881--1378914	7	5.0	7	85	7	52	17	0	0	82	0.67
1378873--1378914	13	3.2	13	93	3	66	16	2	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1378870--1378919	19	2.6	19	84	9	66	18	2	0	80	0.82
1380993--1381050	28	2.1	28	96	0	107	37	5	22	34	1.76
1383654--1383683	15	1.9	16	93	6	53	76	0	20	3	0.92
1384032--1384112	9	8.8	10	77	10	59	72	1	19	6	1.12
1384046--1384126	17	4.4	18	71	17	51	76	1	17	4	1.03
1384046--1384112	19	3.6	18	81	15	64	76	1	17	4	1.04
1384083--1384124	16	2.7	15	82	10	57	83	0	9	7	0.81
1384059--1384112	10	5.5	10	78	10	58	75	1	16	5	1.07
1384679--1384719	16	2.3	18	84	16	59	51	4	17	26	1.65
1385230--1385351	46	2.6	45	85	5	129	39	9	13	37	1.77
1385271--1385563	21	13.8	21	72	16	135	39	9	17	34	1.81
1385244--1385330	25	3.7	24	79	13	99	42	9	11	36	1.73
1385377--1385563	63	2.9	62	87	5	250	40	8	16	34	1.79
1385421--1385718	42	7.3	40	67	17	161	38	9	16	35	1.81
1385586--1385638	21	2.6	20	85	5	70	39	11	13	35	1.80
1385523--1385730	79	2.6	79	94	0	353	39	10	15	34	1.81
1385602--1385718	21	5.8	21	73	17	97	39	10	13	36	1.79
1385264--1385718	100	4.4	100	73	15	238	39	9	15	34	1.81
1385782--1386050	114	2.4	114	89	0	396	35	14	14	34	1.87
1386322--1386568	45	5.5	45	82	6	297	24	12	19	43	1.86
1386303--1386577	89	3.1	88	84	6	342	25	12	18	43	1.86
1386575--1386600	11	2.4	11	100	0	52	84	0	7	7	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1386804--1386849	16	2.8	16	80	9	58	19	2	0	78	0.86
1387398--1387438	16	2.4	17	84	12	57	51	0	48	0	1.00
1387698--1387724	4	6.8	4	100	0	54	22	0	0	77	0.76
1387938--1388052	59	1.9	60	85	5	162	46	3	9	40	1.53
1387931--1388164	71	3.8	58	74	17	168	46	5	9	38	1.61
1388041--1388073	15	2.3	15	94	5	59	63	6	0	30	1.18
1388187--1388220	2	17.0	2	100	0	68	50	0	0	50	1.00
1392058--1392088	13	2.5	12	94	5	53	9	0	0	90	0.46
1392060--1392095	10	3.6	10	88	11	56	11	0	0	88	0.50
1393725--1393793	32	2.2	31	84	5	86	20	24	23	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129