genome.fa.s13.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  77  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14620161--14620266	48	2.2	48	83	9	128	52	9	2	34	1.48
14624823--14624869	7	6.6	7	85	4	58	80	2	6	10	0.96
14624836--14624876	22	1.9	22	95	5	75	78	0	12	9	0.98
14625974--14626027	21	2.7	19	86	10	81	25	12	11	50	1.74
14626064--14626124	28	2.1	29	84	3	79	31	13	4	50	1.62
14626090--14626132	21	2.1	21	86	4	61	32	11	4	51	1.59
14626280--14626385	38	2.8	38	85	1	142	33	7	13	46	1.71
14630487--14630543	14	4.1	14	71	13	55	71	5	0	22	1.05
14630826--14630851	13	2.0	13	100	0	52	7	46	0	46	1.31
14631929--14632003	34	2.2	34	87	0	105	50	10	16	22	1.75
14632193--14632269	32	2.4	32	89	4	111	48	12	23	15	1.80
14632313--14632424	32	3.5	32	75	12	104	47	11	23	17	1.80
14632417--14632597	59	3.1	59	80	2	204	45	14	18	20	1.85
14632593--14632747	32	4.8	32	78	3	103	49	8	21	20	1.75
14632613--14632759	33	4.5	33	77	6	104	46	7	23	21	1.76
14634131--14634165	18	2.0	18	94	5	63	11	25	0	62	1.28
14637228--14637374	72	2.0	72	100	0	294	47	16	9	26	1.77
14637969--14638000	14	2.3	14	94	0	55	28	0	6	65	1.16
14650059--14650126	25	2.9	23	82	6	75	41	14	26	17	1.88
14650305--14650347	22	2.0	22	90	0	68	44	6	11	37	1.68
14652919--14652945	10	2.7	10	100	0	54	48	0	0	51	1.00
14654208--14654233	12	2.2	12	100	0	52	38	19	7	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14659374--14659422	22	2.2	21	80	16	55	69	0	26	4	1.06
14659373--14659422	23	2.2	22	79	10	57	70	0	26	4	1.05
14659463--14659522	3	20.0	3	92	0	102	66	3	0	30	1.07
14663435--14663473	2	19.0	2	86	5	51	51	5	0	43	1.24
14663778--14663842	29	2.2	29	86	5	87	58	10	3	27	1.47
14663787--14663850	29	2.2	30	91	2	103	57	10	3	28	1.48
14663938--14663986	22	2.3	21	82	10	55	61	2	2	34	1.19
14664050--14664076	12	2.2	12	100	0	54	40	0	0	59	0.98
14665739--14665792	27	2.0	27	96	0	99	22	24	11	42	1.85
14669020--14669056	10	3.7	10	88	0	56	62	0	27	10	1.28
14669020--14669062	20	2.1	21	91	4	70	62	2	23	11	1.40
14670585--14670938	125	2.8	126	82	4	380	35	15	15	33	1.89
14670588--14670938	63	5.6	63	76	8	290	35	15	15	33	1.89
14670650--14670938	62	4.6	61	76	6	233	35	15	14	33	1.89
14672996--14673059	29	2.2	29	82	0	74	21	7	14	56	1.63
14676517--14676582	33	2.0	33	96	0	123	25	15	22	36	1.93
14676687--14676915	76	3.0	76	96	0	422	35	9	13	41	1.77
14677396--14677423	4	7.0	4	100	0	56	50	25	0	25	1.50
14679443--14679483	21	1.9	22	85	5	57	46	7	7	39	1.60
14681439--14681497	29	2.0	29	96	0	109	22	22	11	44	1.85
14703143--14703184	22	1.9	22	85	9	59	30	14	26	28	1.95
14703883--14703946	22	2.9	21	88	9	92	31	18	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14704113--14704272	75	2.1	75	86	3	223	36	13	15	33	1.87
14704007--14704359	181	2.0	180	85	3	478	35	13	16	34	1.88
14704199--14704726	106	5.0	106	81	2	576	34	14	17	33	1.91
14704622--14704810	84	2.2	84	87	0	279	33	12	16	37	1.87
14705113--14705168	18	3.0	18	81	5	58	44	8	21	25	1.81
14705331--14705403	33	2.2	34	82	7	87	34	13	15	36	1.86
14706494--14706530	5	7.8	5	85	8	51	0	16	2	81	0.81
14706761--14706798	12	3.2	12	89	10	53	5	7	0	86	0.69
14706761--14706798	11	3.5	11	86	13	51	5	7	0	86	0.69
14707888--14708113	118	1.9	121	84	2	305	33	14	11	40	1.82
14714877--14714901	12	2.1	12	100	0	50	60	8	16	16	1.58
14719060--14719406	84	4.1	85	84	3	396	36	19	13	29	1.91
14719610--14719642	7	4.9	7	96	3	59	24	15	15	45	1.84
14719667--14719702	18	2.0	18	88	0	54	25	25	13	36	1.93
14719677--14719715	18	2.2	18	85	0	51	25	25	12	35	1.92
14720085--14720548	104	4.5	104	82	4	537	34	14	15	35	1.88
14720485--14720613	68	1.9	69	91	1	215	35	12	15	36	1.85
14720484--14720627	68	2.1	69	86	1	209	37	11	15	35	1.84
14723584--14723608	13	1.9	13	100	0	50	72	12	0	16	1.13
14723958--14723993	18	2.0	18	89	10	56	41	0	0	58	0.98
14730709--14731650	180	5.2	180	77	8	787	39	8	10	40	1.70
14730646--14739623	361	25.0	358	73	10	5292	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14732142--14732174	16	2.0	17	88	5	50	48	3	9	39	1.50
14731656--14736268	181	25.8	180	75	8	3038	40	7	9	41	1.67
14734361--14734692	180	1.8	180	81	3	409	39	4	13	42	1.66
14733787--14739627	181	32.7	178	71	10	1286	40	8	9	41	1.68
14736281--14742787	181	36.4	178	72	10	3307	40	8	9	41	1.68
14736946--14736997	18	2.9	19	69	16	56	46	7	9	36	1.66
14737848--14737901	18	3.1	17	81	10	56	46	5	7	40	1.55
14740580--14740908	171	1.9	171	80	2	374	39	8	10	42	1.68
14741257--14742746	711	2.1	716	79	6	1561	39	8	10	41	1.69
14742816--14748162	181	29.5	180	72	10	2643	39	8	9	41	1.68
14742816--14758660	362	44.1	356	68	13	3122	39	8	9	41	1.69
14745978--14746025	16	2.7	18	78	12	55	45	6	8	39	1.59
14745989--14746021	18	1.9	17	88	11	50	48	6	6	39	1.53
14742860--14746559	535	6.9	532	75	7	2176	39	8	10	41	1.69
14746661--14746780	64	1.9	64	85	3	170	47	5	10	35	1.63
14746727--14748172	363	4.0	360	79	6	1442	40	8	8	41	1.68
14748228--14748860	174	3.6	174	76	6	486	40	8	9	42	1.67
14748828--14748885	25	2.3	25	96	0	107	53	10	6	29	1.61
14748900--14748940	17	2.4	17	88	8	57	43	2	7	46	1.44
14748859--14749657	181	4.4	179	76	6	643	39	9	10	40	1.72
14750168--14750219	26	2.0	26	85	3	70	38	7	13	40	1.73
14750922--14758660	181	43.1	180	73	9	4297	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14750897--14763075	717	17.0	702	69	13	2898	40	8	9	41	1.68
14757046--14757111	20	3.5	20	66	21	61	50	3	13	33	1.57
14757043--14757124	35	2.3	35	93	2	137	47	2	14	35	1.58
14758467--14759269	293	2.7	286	80	7	800	38	7	10	43	1.67
14758991--14759684	181	3.9	179	78	8	671	40	8	9	42	1.68
14759524--14759820	145	2.0	146	84	1	391	39	7	10	42	1.69
14759669--14763088	181	19.2	181	75	8	2483	40	8	9	41	1.68
14759192--14760174	506	1.9	503	81	5	1162	40	8	9	41	1.68
14761670--14761981	169	1.8	169	80	2	367	42	7	8	42	1.62
14763146--14763708	178	3.1	178	73	8	482	40	7	9	42	1.65
14763705--14765090	182	7.8	175	71	10	450	39	9	9	41	1.70
14763851--14764230	176	2.1	177	82	4	435	40	9	9	41	1.70
14764631--14765083	182	2.5	181	79	4	468	40	7	10	41	1.69
14765324--14765365	20	2.1	20	82	8	50	52	16	7	23	1.68
14765582--14765880	155	1.9	154	89	2	465	42	6	8	42	1.60
14765433--14766423	335	2.9	330	77	8	764	40	7	9	42	1.65
14765741--14766538	181	4.5	178	76	7	715	38	7	10	43	1.66
14765743--14766476	357	2.0	360	81	4	842	38	7	10	43	1.67
14766595--14766638	24	1.9	23	81	9	54	36	9	0	54	1.32
14766600--14768557	181	10.9	180	75	6	1322	40	8	9	41	1.67
14766600--14768548	361	5.4	362	75	8	1000	40	8	9	41	1.67
14766600--14768554	542	3.6	534	76	6	1692	40	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14768554--14768582	14	2.1	14	100	0	58	44	6	0	48	1.29
14768564--14769393	178	4.6	180	78	5	851	41	8	8	40	1.67
14768564--14769393	359	2.3	354	82	6	947	41	8	8	40	1.67
14770548--14770594	18	2.7	18	77	12	53	38	12	4	44	1.62
14769825--14770630	345	2.3	352	78	5	812	40	10	8	40	1.70
14769865--14771430	181	8.8	179	73	8	995	41	9	8	40	1.68
14772067--14772207	6	22.2	6	70	19	65	71	0	2	24	1.04
14772108--14772204	4	26.0	4	81	10	52	69	1	2	27	1.07
14772063--14772140	20	3.9	20	76	12	63	75	0	5	19	0.98
14772130--14772245	3	36.7	3	73	20	71	63	4	0	31	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129