genome.fa.s13.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  31  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6314310--6314465	4	41.2	4	66	16	59	69	0	4	25	1.12
6314354--6314433	32	2.5	32	87	6	108	70	0	3	26	1.04
6314304--6314459	22	7.0	23	75	17	118	68	0	5	25	1.14
6314294--6314461	55	3.0	56	85	12	215	70	0	5	23	1.12
6314389--6314450	17	3.9	15	76	18	54	69	0	3	27	1.04
6314389--6314459	23	3.2	23	86	5	103	71	0	2	25	0.99
6314366--6314501	32	4.3	32	76	13	113	69	0	3	25	1.09
6314388--6314511	6	20.3	6	65	18	51	71	0	3	24	1.05
6314764--6315187	43	10.0	41	78	10	385	42	19	14	23	1.88
6314764--6315183	84	5.0	85	81	9	443	42	19	14	23	1.88
6314757--6315187	128	3.4	126	81	10	497	42	19	14	23	1.88
6315984--6316104	63	1.9	63	93	0	206	29	21	9	38	1.86
6316773--6316813	18	2.3	18	87	8	57	4	14	0	80	0.87
6316771--6316839	26	2.7	26	81	0	75	7	15	0	76	0.99
6321044--6321076	15	2.2	15	94	0	57	24	3	3	69	1.16
6322029--6322093	22	3.0	20	82	14	76	67	1	6	24	1.22
6322057--6322129	29	2.5	30	88	6	105	75	0	2	21	0.93
6322088--6322167	21	3.9	21	73	18	78	75	1	2	21	1.00
6322088--6322131	9	4.6	9	78	15	52	81	0	2	15	0.78
6322003--6322166	4	40.8	4	65	15	54	70	1	4	24	1.13
6322222--6322262	21	2.0	21	95	0	73	21	36	26	14	1.93
6325172--6325218	10	4.7	10	83	0	67	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6325172--6325220	19	2.5	19	86	3	71	83	0	16	0	0.64
6325480--6325518	12	3.2	12	89	10	53	74	0	17	7	1.05
6325488--6325545	10	5.8	10	78	15	66	79	1	15	3	0.95
6325487--6325545	9	6.1	9	80	11	64	79	1	15	3	0.94
6326578--6326721	46	3.1	45	77	8	130	38	6	14	40	1.73
6326875--6327005	34	3.8	33	68	8	84	35	16	10	36	1.84
6326914--6327005	17	5.4	17	79	5	69	36	18	8	35	1.82
6327264--6327341	35	2.3	35	80	13	90	35	14	12	37	1.84
6327649--6327755	43	2.5	43	90	4	162	28	11	14	45	1.79
6328658--6328863	102	2.0	101	80	12	226	48	8	5	37	1.57
6332218--6332250	13	2.5	13	90	0	57	48	6	9	36	1.60
6333052--6333107	22	2.5	22	97	0	103	39	10	12	37	1.78
6336833--6336863	10	2.9	11	90	9	55	9	0	6	83	0.79
6336833--6336871	10	3.9	10	90	6	53	12	0	5	82	0.83
6336833--6336888	9	6.0	9	81	8	51	14	0	5	80	0.88
6336857--6336894	16	2.3	16	83	16	51	21	0	2	76	0.91
6337422--6337446	2	12.5	2	100	0	50	48	0	0	52	1.00
6338142--6338172	16	1.9	16	93	0	53	64	0	0	35	0.94
6338164--6338196	16	2.1	16	88	11	50	51	0	0	48	1.00
6338199--6338290	42	2.2	42	82	7	107	56	2	3	38	1.28
6348452--6348491	15	2.7	14	81	11	53	32	0	2	65	1.06
6349076--6349103	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6352580--6352613	2	17.0	2	100	0	68	50	0	50	0	1.00
6362952--6362978	2	13.5	2	100	0	54	51	48	0	0	1.00
6363246--6363317	36	2.0	36	94	0	126	38	16	13	30	1.88
6364825--6364879	27	2.0	27	100	0	110	43	25	10	20	1.84
6370168--6370237	35	2.1	34	94	5	124	51	8	5	34	1.56
6370786--6370832	15	3.0	15	77	20	51	82	4	6	6	0.92
6375100--6375138	18	2.2	18	90	0	60	43	23	10	23	1.84
6375981--6376042	30	2.1	30	100	0	124	41	9	6	41	1.63
6376649--6376692	3	14.7	3	100	0	88	31	0	0	68	0.90
6377873--6377900	3	9.3	3	100	0	56	35	0	0	64	0.94
6379840--6379893	14	3.6	16	80	14	62	53	0	0	46	1.00
6379857--6379893	8	4.6	8	86	0	56	56	0	0	43	0.99
6379854--6379901	14	3.3	14	80	11	51	60	0	0	39	0.97
6379857--6379907	26	2.0	24	85	7	66	60	0	0	39	0.97
6380507--6380562	23	2.5	24	82	8	73	50	0	0	50	1.00
6380510--6380575	21	3.0	22	78	8	64	43	0	1	54	1.09
6380606--6380638	16	2.0	17	88	5	50	69	0	0	30	0.88
6380884--6380956	26	2.8	26	81	6	76	57	0	0	42	0.98
6380918--6380956	10	4.2	10	81	18	57	69	0	0	30	0.89
6380922--6380956	17	2.0	18	94	5	63	68	0	0	31	0.90
6381798--6381836	20	2.0	20	89	0	60	51	2	2	43	1.29
6381931--6381974	19	2.3	18	85	11	61	29	4	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6389081--6389744	60	11.0	59	82	9	709	35	13	6	44	1.70
6389252--6389383	70	1.9	70	93	0	228	34	9	6	50	1.60
6389322--6389734	118	3.5	118	87	4	609	35	12	6	44	1.69
6389491--6389580	26	3.2	26	64	27	65	40	11	8	40	1.72
6389086--6389746	237	2.7	240	85	7	847	35	13	6	44	1.70
6389861--6389908	25	1.9	25	87	8	71	79	4	2	14	0.98
6390987--6391054	34	2.0	35	91	2	111	20	30	22	26	1.98
6391543--6391587	23	2.0	23	86	0	63	42	0	2	55	1.12
6393170--6394453	370	3.5	370	86	1	1660	20	30	21	27	1.98
6394786--6394871	30	2.8	30	87	5	111	40	9	3	46	1.53
6394801--6394890	31	2.9	31	85	8	105	41	11	3	44	1.56
6394917--6394984	29	2.3	29	83	14	86	45	2	14	36	1.60
6401067--6401288	31	7.1	30	73	7	133	32	9	21	35	1.87
6401339--6401395	30	1.9	30	82	7	71	28	12	19	40	1.87
6404408--6404468	30	2.0	30	87	0	86	44	1	1	52	1.20
6404408--6404456	14	3.4	14	75	10	53	44	0	2	53	1.12
6404445--6404492	22	2.2	22	89	10	73	43	4	0	52	1.20
6405646--6405680	18	1.9	18	94	0	61	68	2	5	22	1.24
6405703--6405732	2	15.0	2	100	0	60	50	0	0	50	1.00
6406320--6406374	25	2.2	25	83	3	76	34	0	7	58	1.26
6410449--6410510	25	2.5	25	94	0	106	22	9	25	41	1.84
6413002--6413121	3	41.0	3	84	3	129	63	5	2	28	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6414097--6414151	23	2.3	25	78	9	60	16	18	7	58	1.60
6419077--6419143	33	2.0	33	97	0	125	37	16	11	34	1.85
6420663--6420710	24	2.0	24	83	0	60	41	4	2	52	1.32
6424395--6424578	97	1.9	98	89	1	289	24	13	23	38	1.91
6431303--6431331	6	5.0	6	95	4	51	0	31	17	51	1.45
6431335--6431377	13	3.4	13	80	6	52	0	27	2	69	1.00
6435779--6435825	24	2.0	24	83	8	60	42	2	0	55	1.12
6436472--6436531	22	2.7	20	76	19	57	48	1	6	43	1.39
6441241--6441594	62	5.7	62	73	9	170	38	8	11	41	1.71
6441370--6441595	124	1.8	123	83	4	303	39	9	9	41	1.70
6441301--6441594	62	4.8	60	73	12	229	39	9	10	41	1.71
6441801--6441927	61	2.1	60	85	4	166	32	8	11	48	1.69
6445574--6445606	2	17.0	2	87	6	50	51	3	0	45	1.16
6453550--6453590	16	2.4	18	88	8	59	19	9	0	70	1.14
6459976--6460013	17	2.4	16	86	8	51	31	0	2	65	1.06
6463969--6464020	26	2.0	26	100	0	104	23	11	11	53	1.69
6468965--6469033	27	2.5	28	81	11	79	53	0	0	46	1.00
6468989--6469030	21	1.9	23	85	9	61	52	0	0	47	1.00
6477921--6477958	17	2.1	19	85	9	53	50	0	0	50	1.00
6488444--6488481	20	1.9	20	88	0	58	36	5	0	57	1.21
6490811--6490844	16	2.1	16	88	0	50	58	0	23	17	1.38
6490830--6490875	11	4.1	12	83	13	62	65	0	17	17	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6490832--6490885	10	5.2	10	82	12	65	68	0	14	16	1.21
6490830--6490875	22	2.0	23	91	4	76	65	0	17	17	1.28
6490816--6490876	23	2.5	24	79	12	72	65	0	18	16	1.27
6492124--6492151	14	2.0	14	100	0	56	35	14	0	50	1.43
6500610--6500641	6	5.3	6	96	0	55	18	0	68	12	1.20
6501193--6501284	46	2.0	46	93	0	157	36	5	22	34	1.78
6511462--6511500	2	19.0	2	89	5	60	46	5	0	48	1.24
6517042--6517090	23	2.1	23	88	0	71	57	0	4	38	1.18
6517139--6517186	21	2.2	22	88	3	71	54	0	2	43	1.12
6524126--6524168	21	2.0	21	82	8	52	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129