genome.fa.s13.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  83  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15055976--15056051	25	3.0	25	74	18	75	48	1	0	50	1.09
15056317--15056358	14	3.1	13	83	16	50	54	7	2	35	1.41
15056388--15056479	6	15.0	6	67	24	50	47	1	2	48	1.20
15056388--15056454	24	2.8	25	80	13	79	49	1	1	47	1.19
15056502--15056583	30	2.7	29	74	16	76	46	3	2	47	1.33
15057583--15057690	13	7.8	14	69	18	57	47	2	1	48	1.27
15057627--15057651	12	2.1	12	100	0	50	48	0	0	52	1.00
15057665--15057689	10	2.5	10	100	0	50	52	0	0	48	1.00
15058238--15058280	15	2.8	15	78	3	50	41	0	0	58	0.98
15059753--15059790	19	2.0	20	89	5	60	44	0	2	52	1.14
15060194--15060234	19	2.1	19	86	13	57	43	0	0	56	0.99
15060513--15060571	9	6.3	9	76	21	59	52	0	1	45	1.10
15060658--15060692	10	3.4	10	84	7	52	57	2	0	40	1.14
15060778--15060837	12	5.3	11	76	11	50	51	0	0	48	1.00
15061089--15061126	16	2.4	16	86	8	51	52	0	0	47	1.00
15061279--15061356	18	4.2	19	70	25	60	48	2	1	47	1.23
15061264--15061366	29	3.8	26	75	22	104	49	1	1	46	1.24
15061254--15061366	54	2.0	56	82	14	137	49	1	1	46	1.22
15061401--15061448	15	2.9	18	71	22	52	52	0	0	47	1.00
15061395--15061482	28	3.2	29	78	15	82	52	0	1	46	1.08
15061642--15061697	23	2.4	23	79	8	60	44	3	1	50	1.29
15061695--15061747	27	2.0	26	82	14	63	49	3	5	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15061830--15061934	12	9.6	12	69	23	56	45	0	1	51	1.18
15061856--15061897	22	1.9	22	85	9	59	42	0	0	57	0.99
15061885--15061945	22	2.8	21	83	11	70	49	0	1	49	1.10
15061866--15061951	22	3.4	25	72	25	67	47	1	1	50	1.16
15062051--15062097	18	2.5	18	76	16	51	48	4	4	42	1.42
15065878--15065913	17	2.1	17	89	5	54	8	0	2	88	0.59
15065918--15066339	42	10.1	41	89	3	528	37	21	17	24	1.94
15066605--15066709	43	2.4	44	78	12	117	33	17	12	37	1.87
15066629--15066710	43	1.9	42	87	7	121	35	15	10	37	1.83
15068027--15068112	11	8.2	11	75	21	60	8	13	0	77	0.97
15072369--15072591	60	3.6	60	79	9	229	35	12	8	44	1.71
15072776--15072885	58	1.9	56	94	3	193	14	21	16	47	1.82
15073330--15074329	370	2.7	372	94	1	1794	23	25	33	17	1.96
15075260--15075301	21	2.0	21	95	0	75	38	16	38	7	1.76
15075938--15075985	21	2.2	23	85	10	66	45	2	6	45	1.40
15077835--15077868	17	2.0	17	88	0	50	38	2	2	55	1.30
15077893--15077960	25	2.8	24	77	18	68	44	0	2	52	1.16
15077921--15077984	26	2.4	26	82	15	69	45	0	3	51	1.17
15078137--15078578	180	2.5	177	80	4	471	43	10	7	37	1.68
15078137--15078687	180	3.1	177	77	7	465	43	10	7	39	1.67
15078916--15078967	6	8.5	6	83	16	63	48	0	1	50	1.12
15078909--15078967	18	3.3	18	77	17	61	47	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15079335--15079369	13	2.8	13	87	12	56	45	0	5	48	1.26
15079382--15079438	24	2.4	23	77	11	62	54	1	0	43	1.10
15079510--15079574	24	2.9	22	72	18	55	47	4	0	47	1.22
15079510--15079606	43	2.2	44	80	10	110	49	3	0	47	1.17
15079585--15079648	26	2.6	24	85	7	76	46	1	1	50	1.20
15079700--15079751	20	2.6	20	93	0	86	40	1	0	57	1.10
15079779--15079834	17	3.1	17	73	17	51	53	0	0	46	1.00
15079785--15079849	23	3.0	20	80	19	53	52	0	0	47	1.00
15079775--15079835	13	5.2	12	81	15	67	55	0	0	44	0.99
15079791--15079841	13	4.1	13	82	10	54	50	0	0	49	1.00
15079800--15079847	18	2.8	18	81	12	57	52	0	0	47	1.00
15080919--15080950	10	3.1	11	82	17	50	46	0	0	53	1.00
15081042--15081078	12	3.2	12	88	7	58	45	0	0	54	1.00
15081087--15081144	19	3.0	20	78	12	68	51	0	0	48	1.00
15081101--15081189	22	4.0	22	74	23	64	57	0	1	41	1.06
15081815--15081910	32	3.2	28	77	12	95	50	0	2	47	1.12
15081858--15081900	20	2.2	20	83	8	52	51	0	2	46	1.13
15081919--15081998	43	2.0	42	82	9	103	51	2	1	45	1.22
15082132--15082186	24	2.4	23	75	6	58	54	3	1	40	1.28
15082498--15082551	25	2.1	27	86	6	76	55	0	1	42	1.10
15083278--15083345	26	2.8	23	76	12	66	45	0	4	50	1.22
15083522--15083546	12	2.1	12	100	0	50	48	8	8	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15083643--15083704	32	1.9	33	83	3	81	45	1	1	51	1.20
15083774--15083842	36	1.9	36	82	11	88	40	2	1	55	1.24
15083869--15083899	8	4.0	8	95	4	55	38	0	0	61	0.96
15083905--15083964	20	3.0	20	69	16	52	50	0	3	46	1.18
15084090--15084149	30	2.1	29	82	11	72	56	0	5	38	1.21
15084115--15084157	19	2.3	18	88	8	59	58	0	2	39	1.11
15084527--15084581	21	2.8	19	77	20	60	45	1	5	47	1.36
15084674--15084728	21	2.5	22	85	11	78	45	3	3	47	1.38
15084709--15084776	19	3.6	19	78	21	72	51	0	0	48	1.00
15084721--15084791	21	3.4	21	81	7	83	47	0	0	52	1.00
15084875--15084933	29	2.0	30	86	6	84	49	0	3	47	1.18
15084976--15085045	24	3.0	23	74	12	70	51	1	0	47	1.09
15085383--15085438	29	2.1	26	83	12	69	37	3	1	57	1.27
15085537--15085590	19	2.7	19	80	8	54	59	5	0	35	1.21
15085538--15085605	28	2.6	27	86	11	88	55	4	0	39	1.20
15085560--15085600	16	2.6	16	88	0	55	58	2	0	39	1.11
15085671--15085718	22	2.2	21	77	3	51	56	0	2	41	1.11
15086140--15086168	9	3.3	9	95	4	51	41	0	0	58	0.98
15086223--15086699	179	2.6	181	80	5	480	42	10	8	39	1.68
15086367--15086762	182	2.3	171	81	8	435	44	9	7	38	1.64
15087019--15087073	21	2.4	22	82	14	67	41	1	1	54	1.21
15087222--15087246	13	1.9	13	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15087748--15087812	25	2.6	27	72	20	68	44	0	3	52	1.16
15087751--15087813	28	2.5	27	78	19	73	44	0	3	52	1.17
15087778--15087817	15	2.5	16	88	8	55	50	0	2	47	1.14
15088005--15088050	15	3.1	15	84	6	58	56	0	0	43	0.99
15088071--15088133	32	1.9	33	83	3	83	47	0	4	47	1.23
15088884--15088930	22	2.3	19	85	10	58	55	0	2	42	1.12
15089902--15089928	14	1.9	14	100	0	54	44	0	0	55	0.99
15089999--15090039	21	2.0	21	85	9	57	51	0	2	46	1.14
15090554--15090722	41	4.2	41	83	3	198	49	19	9	21	1.77
15091063--15091113	16	3.1	16	76	15	50	41	1	1	54	1.22
15091210--15091255	18	2.6	18	82	3	58	54	4	0	41	1.20
15091712--15091746	18	1.9	18	88	0	52	42	2	0	54	1.15
15092316--15092353	19	2.0	19	85	10	51	44	2	0	52	1.14
15093061--15093101	20	2.1	19	86	4	55	48	4	0	46	1.23
15093095--15093155	21	3.4	17	73	18	52	45	1	3	49	1.28
15093316--15093349	17	2.0	17	88	0	50	38	2	2	55	1.30
15093363--15093439	19	3.9	19	75	13	66	46	0	0	53	1.00
15093300--15093474	18	9.6	18	68	18	71	46	1	1	50	1.19
15093615--15094180	184	3.1	179	75	10	522	43	10	7	38	1.67
15094152--15094199	20	2.4	21	80	16	57	52	4	4	39	1.40
15094152--15094209	19	2.9	19	76	16	55	53	3	3	39	1.35
15095034--15095088	26	2.1	26	83	6	67	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15095119--15095170	14	3.6	16	78	19	60	44	0	0	55	0.99
15095212--15095250	10	3.5	11	83	16	53	56	0	0	43	0.99
15095223--15095262	13	3.2	13	89	10	57	52	0	0	47	1.00
15095206--15095276	23	3.2	22	77	16	67	50	1	0	47	1.09
15095238--15095275	13	2.9	13	88	7	51	44	0	0	55	0.99
15095840--15095917	19	4.1	18	70	15	59	46	0	1	52	1.08
15096297--15096353	24	2.4	25	79	5	64	42	3	1	52	1.28
15096336--15096372	15	2.5	15	91	4	58	43	2	0	54	1.14
15096503--15096582	16	5.3	15	76	11	60	53	0	2	43	1.14
15096506--15096570	23	2.8	23	77	15	55	53	0	3	43	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129