genome.fa.s13.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  109  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19655567--19655697	13	8.7	14	67	22	54	67	2	3	25	1.19
19655975--19656107	39	3.4	38	82	5	149	45	15	12	27	1.80
19663745--19663807	25	2.5	27	82	12	80	47	3	9	39	1.52
19663976--19664014	11	3.4	11	80	13	51	48	5	7	38	1.54
19663955--19664014	24	2.4	25	86	10	79	46	8	8	36	1.64
19664295--19664506	104	2.0	104	86	3	293	50	11	14	23	1.75
19664295--19664445	48	3.0	48	76	17	144	49	12	13	24	1.76
19665471--19665507	18	2.0	18	89	5	56	72	0	10	16	1.10
19665490--19665568	31	2.6	28	79	18	79	77	1	15	6	1.03
19666239--19666489	79	3.2	80	84	3	294	37	9	23	29	1.86
19666263--19666540	79	3.5	78	79	5	272	34	9	24	30	1.88
19666969--19667149	58	3.1	57	83	7	202	37	9	20	33	1.85
19667451--19667599	42	3.6	42	82	5	178	25	12	19	42	1.87
19667479--19667619	41	3.4	42	74	18	125	24	14	19	41	1.89
19667458--19667621	83	2.0	83	82	7	199	25	13	18	42	1.87
19667636--19667665	13	2.2	14	94	5	53	90	6	3	0	0.56
19673673--19673723	25	2.1	25	82	10	61	45	7	3	43	1.51
19675197--19675235	18	2.2	18	85	0	51	74	2	0	23	0.94
19675258--19675292	14	2.4	14	90	4	52	31	14	14	40	1.86
19680104--19680153	15	3.3	15	74	0	55	40	10	0	50	1.36
19690418--19690447	15	2.0	15	93	0	51	30	6	0	63	1.20
19691042--19691108	34	2.0	33	91	5	109	43	8	8	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19692028--19692079	17	3.1	17	78	10	54	80	1	7	9	0.97
19692236--19692288	12	4.5	12	79	11	56	58	1	0	39	1.09
19694044--19694091	23	2.1	23	84	7	62	14	6	2	77	1.06
19694044--19694122	24	3.5	22	73	26	67	15	10	1	73	1.15
19695854--19695880	3	9.0	3	100	0	54	33	0	0	66	0.92
19703603--19703635	18	1.9	18	88	11	52	84	9	3	3	0.82
19704832--19704870	3	13.0	3	94	0	69	64	0	2	33	1.08
19705877--19705916	21	1.9	21	85	10	55	62	2	0	35	1.09
19707063--19707100	15	2.5	15	91	0	58	26	0	15	57	1.38
19717613--19717657	10	4.5	10	80	8	56	2	13	0	84	0.72
19717614--19717659	19	2.3	20	88	3	67	2	15	0	82	0.76
19719149--19719184	10	3.6	10	88	0	54	55	8	5	30	1.52
19719304--19719354	8	6.5	8	90	2	59	0	0	17	82	0.67
19719303--19719366	15	4.4	14	81	13	67	1	0	20	78	0.84
19719311--19719355	8	5.8	8	92	2	74	0	0	22	77	0.76
19719435--19719479	24	1.9	23	82	13	56	53	11	2	33	1.49
19719885--19719962	22	3.4	23	72	21	65	37	14	12	35	1.84
19719904--19719959	22	2.6	21	80	8	67	39	16	12	32	1.85
19719748--19720059	118	2.7	116	78	4	324	36	11	17	34	1.86
19720032--19720090	22	2.7	21	87	10	82	27	6	28	37	1.82
19720352--19720391	21	1.9	21	89	0	62	40	12	12	35	1.81
19724679--19724722	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19725543--19725622	32	2.5	32	83	0	88	35	12	18	33	1.89
19733088--19733125	20	1.9	20	89	10	60	18	5	2	73	1.14
19734093--19734141	3	16.3	3	100	0	98	34	0	0	65	0.93
19740849--19740920	29	2.5	29	77	6	83	55	1	2	40	1.23
19747364--19747407	23	1.9	23	85	0	61	27	13	11	47	1.77
19753777--19753868	30	3.1	30	83	9	116	55	3	5	35	1.39
19753791--19753878	30	2.9	29	81	6	104	52	4	4	38	1.42
19753775--19753916	60	2.4	59	80	10	148	53	2	5	38	1.39
19754148--19754214	23	2.8	25	76	15	61	47	2	2	46	1.33
19755792--19755846	28	2.0	28	85	0	74	45	1	5	47	1.36
19756733--19756803	29	2.4	29	79	11	81	29	9	7	53	1.60
19760907--19760939	17	1.9	17	100	0	66	21	0	0	78	0.75
19760985--19761012	5	5.6	5	100	0	56	35	0	0	64	0.94
19761026--19761373	135	2.6	132	83	10	447	47	4	10	37	1.60
19761243--19761420	59	3.0	58	89	4	257	48	4	12	34	1.61
19761268--19761420	59	2.6	60	94	1	263	45	4	13	36	1.63
19761190--19761328	74	1.9	75	83	6	183	49	4	10	35	1.56
19761850--19761883	16	2.1	16	88	0	50	23	14	20	41	1.89
19762260--19762297	18	2.1	19	95	5	69	63	0	0	36	0.95
19762243--19762301	19	3.1	20	85	9	79	59	0	0	40	0.97
19763659--19763702	24	1.9	23	90	9	72	54	2	4	38	1.33
19763963--19764047	28	3.3	26	78	16	97	60	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19765860--19766162	156	1.9	153	84	5	338	43	9	10	35	1.72
19770326--19770386	3	20.7	3	93	3	106	34	0	0	65	0.93
19770685--19770710	13	2.0	13	100	0	52	38	0	15	46	1.46
19771557--19771596	20	2.0	21	90	5	64	45	0	2	52	1.14
19771659--19771722	30	2.1	30	85	0	83	45	4	3	46	1.39
19780628--19780732	42	2.7	38	80	7	113	41	16	12	29	1.84
19780623--19780879	44	6.1	42	80	8	179	41	15	11	30	1.83
19780662--19780820	44	3.7	44	85	1	196	38	17	13	30	1.89
19791746--19791802	30	1.9	30	85	0	78	54	3	10	31	1.51
19793888--19793948	23	2.7	23	77	10	63	42	4	0	52	1.23
19794021--19794062	20	2.0	21	95	4	77	45	4	0	50	1.23
19794025--19794067	20	2.0	20	86	8	59	41	9	2	46	1.48
19794507--19794587	21	3.8	20	75	14	65	53	1	6	39	1.34
19794634--19794683	20	2.5	21	77	9	59	48	8	0	44	1.32
19795962--19795990	14	2.1	14	93	6	51	58	0	0	41	0.98
19798525--19798620	25	4.0	22	69	18	68	30	2	8	59	1.38
19798640--19798700	31	2.0	31	90	0	95	27	6	13	52	1.64
19798667--19798722	20	2.6	22	80	8	62	28	5	12	53	1.60
19798668--19798919	55	4.6	55	84	3	323	28	5	11	53	1.58
19798719--19798761	22	2.0	22	90	0	68	27	4	11	55	1.55
19798775--19798832	20	2.7	23	79	12	70	29	6	8	55	1.56
19798873--19798919	20	2.3	20	85	0	58	36	4	8	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19798691--19798969	55	5.1	55	80	9	137	29	4	11	54	1.57
19798999--19799059	24	2.6	23	82	7	77	36	3	6	54	1.43
19798978--19799058	25	3.6	22	72	20	60	35	3	6	54	1.43
19799131--19799168	18	2.1	19	90	5	60	36	0	7	55	1.29
19803542--19803626	41	2.1	40	84	2	107	49	11	5	32	1.63
19810268--19810292	7	3.6	7	100	0	50	28	0	0	72	0.86
19823669--19823730	23	2.7	22	71	11	54	41	1	1	54	1.19
19826848--19826910	31	2.0	31	84	0	81	53	11	6	28	1.60
19826931--19826988	26	2.2	26	75	6	64	60	13	1	24	1.43
19827077--19827129	20	2.5	21	79	11	56	79	3	3	13	1.01
19827077--19827129	22	2.5	20	77	14	61	79	3	3	13	1.01
19829636--19829682	8	5.8	8	81	18	53	10	2	2	85	0.78
19829637--19829681	13	3.6	12	85	8	63	8	2	2	86	0.73
19829717--19829771	17	3.3	17	80	7	60	67	9	1	21	1.28
19829748--19829818	24	3.2	21	76	19	65	73	2	5	18	1.16
19829757--19829818	24	2.7	21	83	14	70	74	1	4	19	1.09
19829759--19829814	29	2.0	28	82	3	67	73	1	5	19	1.12
19830452--19830500	17	3.1	15	81	18	55	71	0	0	28	0.86
19830449--19830500	3	18.0	3	78	21	58	71	0	0	28	0.87
19830471--19830653	20	9.5	19	71	18	96	51	7	1	39	1.40
19837525--19837562	17	2.2	17	86	9	51	50	0	0	50	1.00
19839147--19839241	33	2.9	33	79	3	111	32	14	24	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19842996--19843061	14	4.5	15	74	12	57	43	0	0	56	0.99
19842999--19843057	30	1.9	30	86	6	82	45	0	0	54	0.99
19843005--19843058	16	3.5	15	78	9	56	46	0	0	53	1.00
19843029--19843078	20	2.5	20	87	12	77	50	0	0	50	1.00
19843029--19843084	20	2.8	20	82	15	71	48	0	0	51	1.00
19843582--19843608	13	2.1	13	100	0	54	44	7	0	48	1.31
19847115--19847154	11	3.5	12	80	19	50	47	7	0	45	1.31
19847507--19847568	24	2.5	25	81	2	63	43	0	1	54	1.09
19847625--19847675	19	2.8	18	82	11	59	47	7	5	39	1.57
19850875--19850901	3	9.0	3	100	0	54	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129