genome.fa.s13.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  68  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953670--12953992	56	5.8	55	73	12	232	31	9	8	50	1.65
12953670--12953887	109	2.0	105	83	6	267	30	9	9	50	1.65
12954043--12954087	4	12.0	4	79	13	51	77	2	2	17	0.97
12954046--12954080	18	1.9	18	88	11	54	80	2	2	14	0.95
12954128--12954171	19	2.3	19	84	0	52	52	34	2	11	1.50
12956135--12956183	19	2.8	17	80	14	55	18	20	0	61	1.35
12956137--12956175	9	4.1	10	87	9	55	17	20	0	61	1.34
12958117--12958175	24	2.5	24	83	2	75	32	8	20	38	1.83
12958117--12958166	23	2.1	23	88	3	73	34	10	20	36	1.86
12965279--12965347	24	2.8	25	86	6	95	66	2	8	21	1.32
12965253--12965374	5	23.2	5	67	17	52	68	3	6	21	1.27
12965253--12965373	42	2.9	41	76	14	122	68	3	6	21	1.27
12965321--12965374	11	4.9	11	75	8	56	68	3	3	24	1.22
12965429--12965462	15	2.2	16	89	5	52	73	2	0	23	0.97
12966285--12966497	99	2.1	102	90	2	333	46	8	7	37	1.64
12966382--12966588	111	1.9	111	85	6	294	46	8	7	37	1.63
12972651--12972676	11	2.4	11	100	0	52	92	7	0	0	0.39
12973037--12973066	13	2.2	14	94	5	53	86	0	13	0	0.57
12974511--12974843	168	2.0	168	81	1	398	34	15	14	36	1.88
12974510--12974855	84	4.1	84	78	3	356	34	15	14	36	1.87
12977767--12977931	4	39.5	4	69	17	88	26	3	1	69	1.10
12977766--12977924	37	4.2	37	77	13	112	25	2	1	70	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12977796--12977923	64	2.0	63	84	6	166	28	3	0	67	1.11
12977877--12977973	42	2.3	43	82	8	119	27	6	1	64	1.23
12977796--12977940	67	2.2	68	81	9	165	28	3	0	66	1.12
12977829--12977938	14	8.4	13	75	12	66	30	3	0	65	1.10
12977902--12977982	42	2.0	40	87	4	117	25	7	1	65	1.26
12978889--12978931	11	3.8	11	80	17	52	11	4	2	81	0.93
12978955--12979165	58	3.7	57	84	6	266	43	7	11	37	1.69
12978928--12979166	116	2.1	114	84	7	322	44	6	10	38	1.65
12980870--12980894	2	12.5	2	100	0	50	48	0	0	52	1.00
12984306--12984359	28	2.0	27	85	3	72	59	1	1	37	1.19
12986851--12986891	20	2.1	19	86	4	55	48	0	0	51	1.00
12994438--12994471	17	2.1	17	94	5	61	23	0	0	76	0.79
12994425--12994488	22	2.7	23	79	16	60	18	0	6	75	1.01
12994440--12994489	22	2.2	22	86	10	66	22	0	4	74	0.99
12996215--12996314	50	2.0	49	82	5	121	28	17	6	49	1.70
13006403--13006448	20	2.3	20	100	0	92	39	19	13	28	1.89
13006893--13007316	42	10.1	41	86	7	462	24	13	17	44	1.84
13006890--13007284	84	4.7	85	86	4	516	24	12	17	45	1.83
13006891--13007280	126	3.1	126	87	4	538	25	12	17	44	1.84
13007728--13007773	21	2.1	22	84	11	60	26	0	21	52	1.47
13019443--13019484	2	21.0	2	100	0	84	50	0	0	50	1.00
13020396--13020449	27	2.0	27	88	0	81	31	3	7	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13020421--13020476	21	2.7	21	85	0	67	32	8	8	50	1.65
13020498--13020556	22	2.7	22	78	2	66	38	6	6	47	1.57
13020879--13020922	22	2.0	22	86	0	61	31	11	9	47	1.71
13020932--13021093	22	7.4	22	74	9	100	37	5	10	46	1.62
13020944--13021263	22	14.4	22	69	15	97	36	6	7	49	1.57
13021510--13021596	44	2.0	44	83	0	111	36	8	5	49	1.56
13021510--13021594	22	3.9	22	77	0	80	37	8	5	48	1.58
13021894--13021945	22	2.4	22	83	0	59	36	7	1	53	1.41
13022080--13022194	22	5.4	21	71	14	65	34	7	9	47	1.65
13022357--13022406	21	2.3	20	83	10	64	38	4	8	50	1.51
13022357--13022495	22	6.4	22	68	12	72	37	5	7	49	1.54
13022369--13022494	65	1.9	65	81	9	150	37	5	6	50	1.51
13022582--13022686	22	4.8	22	79	2	95	37	9	3	49	1.54
13022582--13022686	44	2.4	44	80	6	115	37	9	3	49	1.54
13022699--13022741	22	2.0	22	86	9	61	37	11	4	46	1.61
13022793--13022889	21	4.5	22	84	3	92	37	13	4	45	1.63
13022826--13022882	21	2.7	21	97	0	105	38	14	7	40	1.73
13023447--13023502	23	2.4	23	82	14	62	64	1	0	33	1.04
13029697--13029910	105	2.0	105	100	0	428	35	7	21	35	1.82
13033552--13033584	15	2.2	15	94	0	57	15	30	21	33	1.94
13044199--13044388	97	1.9	100	86	7	271	38	10	9	41	1.72
13045689--13045962	138	2.0	137	97	2	525	47	3	0	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13045935--13047173	618	2.0	616	82	8	1512	42	9	10	37	1.70
13048675--13048738	30	2.1	31	94	5	112	32	9	3	54	1.48
13049241--13049269	3	10.0	3	92	7	51	31	0	0	68	0.89
13052166--13052208	19	2.3	19	100	0	86	32	9	20	37	1.85
13055543--13055735	96	2.0	96	100	0	386	45	12	5	37	1.64
13072642--13072715	10	7.5	10	73	19	50	0	22	1	75	0.88
13072653--13072684	17	1.9	16	93	6	55	0	25	3	71	1.00
13072642--13072729	20	4.7	20	80	14	82	0	22	1	76	0.86
13072645--13072723	16	4.8	15	73	21	61	0	21	1	77	0.84
13078091--13078127	19	1.9	19	94	0	65	13	0	5	81	0.86
13079797--13079869	13	5.7	13	75	16	55	6	2	15	75	1.13
13079805--13079869	26	2.5	24	80	9	67	6	1	15	76	1.05
13079953--13080273	104	3.1	103	79	4	317	33	14	14	38	1.87
13080426--13080480	22	2.5	22	81	0	74	25	14	25	34	1.94
13080670--13080727	16	3.3	17	83	11	64	3	8	3	84	0.85
13080678--13080721	17	2.6	16	82	13	52	4	6	2	86	0.77
13080669--13080743	29	2.5	30	83	12	93	2	9	4	84	0.86
13080670--13080743	20	3.8	19	77	16	71	2	9	4	83	0.86
13081054--13081132	35	2.3	34	83	12	99	31	18	18	30	1.96
13081883--13082188	146	2.1	146	80	7	327	20	18	9	51	1.73
13082171--13082209	9	4.3	9	83	0	51	0	15	2	82	0.79
13082169--13082223	15	3.6	15	71	22	51	0	16	3	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13082329--13082371	20	2.2	20	83	8	52	2	11	2	83	0.83
13082346--13082370	13	1.9	13	100	0	50	0	12	0	88	0.53
13083422--13083467	11	4.2	11	97	0	83	26	2	17	54	1.54
13091350--13091380	4	7.8	4	92	0	53	74	0	3	22	0.96
13092132--13092199	16	4.4	16	79	20	56	0	22	1	76	0.87
13092120--13092210	19	4.7	20	75	10	82	0	21	1	76	0.84
13092120--13092196	25	3.2	24	77	17	79	0	22	1	76	0.86
13092121--13092211	11	7.2	13	72	25	54	0	20	1	78	0.82
13092137--13092210	14	5.1	14	75	18	71	0	21	1	77	0.85
13092120--13092210	5	19.0	5	70	20	54	0	21	1	76	0.84
13092121--13092204	17	5.2	16	72	5	71	0	20	1	78	0.82
13092120--13092211	39	2.4	40	80	10	111	0	21	1	77	0.84
13097569--13097605	19	1.9	19	94	0	65	13	0	5	81	0.86
13099302--13099334	15	2.3	15	89	5	50	9	0	9	81	0.87
13099289--13099348	27	2.3	27	82	8	70	6	1	13	78	1.02
13099302--13099348	13	3.3	15	77	14	55	8	2	10	78	1.04
13099279--13099335	25	2.3	24	79	8	60	7	0	14	78	0.94
13099431--13099751	104	3.1	103	79	4	317	33	14	14	38	1.87
13099904--13099958	22	2.5	22	81	0	74	25	14	25	34	1.94
13100531--13100609	35	2.3	34	83	12	99	31	18	18	30	1.96
13101648--13101699	24	2.2	23	83	10	61	0	13	3	82	0.80
13101805--13101846	19	2.2	19	83	8	50	2	11	2	83	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13101822--13101890	13	5.0	13	74	19	52	0	13	8	78	0.97
13105645--13105697	9	6.5	8	81	14	56	5	20	0	73	1.03
13109039--13109087	20	2.5	18	78	18	53	2	22	0	75	0.90
13110890--13110936	17	2.6	19	87	12	64	61	0	0	38	0.96
13110892--13110928	13	2.7	14	84	16	51	64	0	0	35	0.94
13110985--13111073	42	2.1	42	85	0	124	41	17	7	32	1.79
13111454--13111522	26	2.9	24	83	12	88	10	14	0	75	1.05
13111462--13111522	26	2.5	25	87	10	90	11	13	0	75	1.05
13111463--13111520	13	4.8	12	75	10	55	10	13	0	75	1.04
13111677--13111744	16	4.3	15	75	15	57	7	8	0	83	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129