genome.fa.s13.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  33  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781806--6781852	11	4.2	11	76	15	51	74	2	0	23	0.93
6781782--6781849	27	2.6	27	86	6	86	73	1	1	23	1.00
6782284--6782352	33	2.1	33	94	0	120	65	2	5	26	1.29
6785955--6785992	14	2.7	14	91	0	58	39	0	2	57	1.12
6785953--6785997	21	2.1	21	84	8	56	42	0	2	55	1.12
6786680--6786715	15	2.3	16	90	4	56	66	11	22	0	1.22
6787422--6787470	26	2.0	26	88	11	77	18	6	14	61	1.53
6789633--6789724	44	2.1	44	93	4	159	34	13	27	25	1.92
6790851--6790884	3	11.3	3	93	0	59	29	0	2	67	1.05
6794749--6795183	216	2.0	216	89	0	654	26	22	20	30	1.98
6800016--6800060	22	2.0	22	100	0	90	44	8	8	37	1.67
6800023--6800071	22	2.2	22	85	7	64	51	10	10	28	1.68
6803715--6803777	25	2.5	25	84	0	81	36	15	26	20	1.93
6804035--6804079	22	2.0	22	91	0	72	40	4	13	42	1.64
6813887--6813917	12	2.6	12	94	0	53	19	16	29	35	1.93
6816273--6816754	85	5.7	85	75	7	291	41	20	13	23	1.89
6818871--6818943	35	2.1	34	85	7	94	13	28	5	52	1.63
6820606--6820648	17	2.5	16	82	14	50	9	9	0	81	0.88
6821788--6821847	24	2.6	23	81	2	66	26	3	3	66	1.23
6821884--6821925	11	4.0	10	82	17	50	26	0	4	69	1.08
6822306--6822347	21	1.9	23	85	9	61	64	4	19	11	1.44
6823211--6823258	12	3.8	12	83	8	51	16	2	4	77	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6823227--6823287	12	4.6	14	76	17	51	27	1	0	70	0.97
6823249--6823288	14	2.7	15	84	7	55	32	2	0	65	1.06
6823406--6823475	17	3.7	20	81	16	78	32	4	8	54	1.50
6829585--6829620	17	2.1	17	89	0	54	33	19	8	38	1.82
6829656--6829741	35	2.5	35	86	0	118	29	12	12	45	1.79
6829710--6829753	18	2.4	18	80	0	52	36	13	9	40	1.76
6829750--6829798	17	2.8	18	78	6	55	46	14	6	32	1.69
6830384--6830422	6	6.3	6	90	3	60	20	0	12	66	1.24
6830364--6830422	24	2.4	24	82	2	64	23	3	8	64	1.37
6830384--6830422	18	2.1	19	95	4	71	20	0	12	66	1.24
6830688--6830741	20	2.6	21	75	18	60	29	0	0	70	0.88
6830695--6830739	13	3.2	15	79	20	53	26	0	0	73	0.84
6830836--6830998	21	7.7	21	80	16	121	33	6	9	50	1.60
6830902--6830998	20	4.9	21	77	22	104	31	6	10	51	1.61
6831196--6831383	103	1.8	103	91	2	315	47	10	6	35	1.64
6831943--6831969	14	1.9	14	100	0	54	14	0	7	77	0.97
6832619--6832687	29	2.6	26	69	22	61	46	4	2	46	1.37
6832632--6832695	29	2.2	28	81	10	76	51	3	3	42	1.33
6833453--6833494	20	2.1	20	86	0	57	11	4	4	78	1.06
6833439--6833500	26	2.4	26	84	7	74	12	4	4	77	1.09
6835410--6835461	22	2.5	22	87	6	81	48	0	1	50	1.12
6835446--6835497	14	3.6	14	75	10	50	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6835434--6835505	30	2.4	30	83	4	83	55	0	0	44	0.99
6835449--6835487	16	2.4	16	86	0	51	61	0	0	38	0.96
6836648--6836672	8	3.1	8	100	0	50	64	12	0	24	1.27
6843688--6843712	1	25.0	1	100	0	50	0	0	0	100	0.00
6844806--6844844	18	2.2	18	86	9	53	48	2	0	48	1.15
6844815--6844856	17	2.5	17	82	17	52	47	0	2	50	1.14
6845133--6845175	22	2.0	22	81	9	52	13	27	6	51	1.67
6849064--6849097	14	2.4	14	90	0	50	70	8	0	20	1.13
6852883--6852963	39	2.1	38	86	2	108	49	14	12	23	1.77
6853727--6853781	27	2.0	27	93	6	94	29	0	7	63	1.21
6865093--6865117	1	25.0	1	100	0	50	0	0	0	100	0.00
6867084--6867137	5	10.4	5	81	15	65	57	3	0	38	1.17
6877619--6877656	16	2.4	17	82	13	53	44	0	0	55	0.99
6877634--6877687	25	2.2	26	90	6	85	38	0	0	61	0.96
6883404--6883465	15	3.9	15	75	12	52	53	0	3	43	1.17
6884076--6884113	2	19.0	2	94	0	67	0	47	0	52	1.00
6884879--6884949	17	4.2	17	77	10	58	54	26	1	16	1.50
6884917--6884957	17	2.4	17	91	4	64	51	26	0	21	1.48
6884971--6885009	16	2.6	15	88	8	53	53	28	0	17	1.44
6884963--6885017	14	3.7	15	79	11	69	49	27	0	23	1.51
6884975--6885083	51	2.1	51	85	6	141	49	31	0	19	1.48
6893363--6893467	41	2.6	41	87	6	142	37	19	14	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6893705--6893762	21	2.6	23	81	8	75	24	24	20	31	1.98
6893765--6893992	110	2.1	110	85	4	309	25	20	16	38	1.92
6893963--6894047	22	4.0	21	77	13	93	27	25	21	25	1.99
6894155--6894222	21	3.1	23	70	12	61	29	20	17	32	1.96
6894203--6894706	109	4.6	109	82	2	512	25	19	16	38	1.92
6894869--6894931	31	2.0	31	81	6	74	63	0	0	36	0.95
6896376--6896446	17	4.2	17	75	13	76	54	29	1	14	1.48
6896376--6896506	16	8.2	16	71	21	80	50	29	0	19	1.53
6896376--6896451	33	2.2	34	81	9	93	51	31	1	15	1.52
6896523--6896578	14	3.9	14	75	13	51	51	30	0	17	1.46
6896472--6896580	51	2.1	51	85	9	143	49	32	0	18	1.48
6901250--6901285	16	2.2	16	90	0	54	33	2	19	44	1.65
6904699--6904733	18	1.9	18	88	0	52	40	11	0	48	1.39
6905834--6905903	28	2.5	29	75	9	74	48	1	2	47	1.25
6905887--6905932	22	2.0	24	83	8	60	41	0	0	58	0.98
6915863--6915973	55	2.0	54	91	1	177	49	2	16	31	1.59
6915937--6915995	27	2.2	26	84	3	73	55	0	6	37	1.26
6918309--6918338	2	15.0	2	100	0	60	50	0	0	50	1.00
6925419--6925454	6	5.8	6	87	6	54	16	0	0	83	0.65
6925419--6925461	13	3.4	13	87	3	61	13	2	0	83	0.74
6925418--6925454	19	1.9	19	94	0	65	16	0	0	83	0.64
6936707--6936737	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6939433--6939469	12	3.1	12	84	0	56	86	2	10	0	0.67
6947485--6947509	12	2.1	12	100	0	50	92	0	8	0	0.40
6948508--6948553	18	2.5	18	85	3	56	69	0	4	26	1.07
6960565--6961110	45	11.9	45	88	4	689	25	14	24	35	1.93
6960565--6961110	91	5.9	90	87	5	689	25	14	24	35	1.93
6961567--6961601	11	3.1	11	84	8	52	85	0	11	2	0.69
6961609--6961650	22	2.0	21	90	4	66	78	11	7	2	1.04
6964228--6964297	29	2.4	29	79	11	79	48	2	4	44	1.37
6964371--6964453	29	2.8	29	83	5	85	46	2	0	50	1.14
6976513--6976538	13	2.0	13	100	0	52	53	0	0	46	1.00
6979504--6979551	21	2.3	21	92	0	78	50	0	0	50	1.00
6983708--6983747	21	1.9	21	84	0	53	75	5	5	15	1.15
6987005--6987049	11	3.8	12	78	21	51	40	0	8	51	1.33
6987737--6987788	25	2.0	26	85	3	70	44	9	3	42	1.55
6992587--6992622	15	2.4	15	90	9	56	80	0	0	19	0.71
6992593--6992636	21	2.1	20	87	8	61	81	0	4	13	0.83
6993941--6993994	17	3.2	17	72	0	63	35	18	7	38	1.79
6993924--6994007	34	2.5	34	84	0	114	35	16	8	39	1.79
6993851--6993986	68	2.0	68	80	0	155	35	18	9	36	1.83
6994227--6994390	31	5.6	30	68	11	115	21	23	13	41	1.88
6994192--6994448	58	4.4	58	87	2	356	20	22	14	42	1.89
6994193--6994411	27	7.7	27	65	13	89	19	24	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6994477--6994652	57	3.1	57	80	4	201	19	15	14	50	1.78
6994511--6994614	27	3.8	27	71	8	75	19	11	18	50	1.76
6994276--6994736	199	2.3	200	81	5	531	20	18	14	46	1.83
6994598--6994843	84	2.9	85	85	2	325	21	19	13	45	1.84
6996524--6996964	59	7.5	59	80	6	457	46	5	12	35	1.64
6997970--6997994	2	12.5	2	100	0	50	48	0	0	52	1.00
6998694--6998742	25	2.0	25	100	0	98	36	4	4	55	1.38
6998695--6998757	25	2.5	25	87	5	74	36	4	4	53	1.43
7000355--7000436	40	2.0	40	85	0	110	34	8	8	48	1.64
7001095--7001122	10	2.8	10	100	0	56	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129