genome.fa.s13.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  125  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22804308--22804379	24	3.4	21	76	14	67	37	2	0	59	1.12
22804322--22804391	21	3.2	21	71	15	61	38	4	0	57	1.19
22804795--22804836	18	2.4	17	88	11	59	42	0	7	50	1.30
22804976--22805054	19	4.4	17	78	12	77	54	0	1	44	1.08
22805464--22805504	12	3.3	12	83	6	55	60	0	2	36	1.10
22805514--22805556	18	2.4	18	80	3	52	53	0	0	46	1.00
22805884--22805917	17	2.0	17	88	0	50	47	0	2	50	1.16
22806254--22806317	33	1.9	34	84	12	89	42	3	4	50	1.39
22806317--22806400	41	2.0	41	82	13	102	45	1	3	50	1.27
22806466--22806505	20	2.0	20	90	4	64	67	0	0	32	0.91
22807905--22807963	25	2.2	27	85	8	77	49	3	3	44	1.36
22808022--22808069	25	2.0	24	84	12	62	39	4	0	56	1.19
22809195--22809246	23	2.3	23	90	3	79	40	0	7	51	1.30
22809690--22809714	1	25.0	1	100	0	50	100	0	0	0	0.00
22810306--22810350	18	2.4	18	79	17	56	44	2	4	48	1.35
22811808--22811859	26	2.0	25	81	3	59	40	5	1	51	1.37
22811836--22811894	22	2.7	22	76	7	57	49	1	1	47	1.21
22811973--22812010	19	2.0	19	85	10	51	65	0	0	34	0.93
22817733--22817804	34	2.1	35	82	7	85	36	6	8	48	1.60
22821551--22821632	16	5.0	15	72	17	65	64	2	2	30	1.19
22822946--22822978	15	2.1	16	88	5	50	27	0	3	69	1.03
22823626--22823687	23	2.7	23	70	18	58	64	1	1	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22823876--22823926	17	2.9	18	79	5	59	35	0	0	64	0.94
22823862--22823922	17	3.3	17	80	17	52	36	0	0	63	0.94
22823895--22823942	15	3.1	15	84	3	51	29	0	0	70	0.87
22823873--22823940	24	2.8	25	77	18	81	32	0	0	67	0.91
22833357--22833460	2	52.5	2	72	1	75	43	2	7	46	1.47
22835558--22835937	208	1.8	204	81	8	475	36	9	5	48	1.59
22836465--22836501	19	1.9	18	89	10	56	51	16	5	27	1.66
22836945--22837308	41	8.7	41	82	3	379	50	16	11	21	1.76
22836945--22837311	82	4.4	82	82	4	421	50	16	11	21	1.76
22837676--22837738	33	1.9	33	93	0	108	44	14	11	30	1.79
22837706--22837844	23	5.8	23	71	17	104	41	14	9	35	1.78
22837772--22837836	29	2.2	30	88	2	96	44	12	10	32	1.76
22837800--22837844	22	2.0	22	91	0	72	42	13	8	35	1.75
22839070--22839148	7	11.1	7	74	12	54	8	11	0	79	0.93
22839070--22839119	15	3.4	15	76	20	52	10	10	0	80	0.92
22839074--22839127	21	2.5	22	80	17	60	9	11	0	79	0.93
22839072--22839127	27	2.1	27	83	12	71	8	10	0	80	0.91
22844285--22844309	13	1.9	13	100	0	50	56	16	0	28	1.41
22844654--22844701	4	11.0	4	91	8	60	22	0	4	72	1.01
22847195--22847220	2	13.0	2	100	0	52	50	0	0	50	1.00
22854218--22854256	20	1.9	21	84	5	53	35	0	2	61	1.10
22854955--22855051	6	15.8	6	73	12	63	50	1	2	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22854974--22855060	30	2.8	31	77	10	79	50	2	2	44	1.27
22860554--22860600	22	2.1	23	84	7	62	42	0	0	57	0.98
22860567--22860607	20	2.0	21	85	4	57	48	0	2	48	1.14
22860626--22860675	18	2.7	18	79	11	57	64	2	0	34	1.05
22869739--22869781	16	2.6	16	88	3	59	55	2	0	41	1.12
22869843--22869892	26	2.0	25	88	4	73	36	0	0	64	0.94
22869842--22869891	13	3.8	13	81	5	57	36	0	0	64	0.94
22870812--22871092	124	2.3	123	79	7	291	40	8	9	40	1.68
22871037--22871398	189	1.9	187	82	6	459	44	8	8	38	1.65
22871037--22871468	63	6.9	63	70	10	203	44	8	9	37	1.67
22878551--22878603	26	2.0	26	82	7	63	37	9	13	39	1.77
22878577--22878741	72	2.3	74	82	4	210	44	8	10	35	1.70
22879442--22879962	130	4.0	130	99	0	1008	34	9	8	48	1.65
22880175--22880220	14	3.2	14	84	6	65	50	2	0	47	1.13
22881417--22881474	22	2.5	23	78	15	66	44	1	0	53	1.10
22881547--22881593	21	2.2	21	77	7	51	53	0	2	44	1.12
22882819--22882870	22	2.3	23	80	3	61	32	0	5	61	1.20
22885734--22885795	32	1.9	32	96	0	115	24	14	16	45	1.84
22888017--22888042	1	26.0	1	100	0	52	0	0	100	0	0.00
22896909--22896943	6	5.8	6	96	0	61	54	0	45	0	0.99
22898391--22898443	27	2.0	27	88	0	79	24	18	37	18	1.94
22898400--22898452	27	2.0	27	84	0	70	26	22	30	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22900908--22900973	31	2.1	31	81	10	73	45	4	6	43	1.49
22914205--22914249	23	2.0	23	95	0	81	40	24	8	26	1.84
22914956--22915059	53	2.0	53	90	0	163	53	23	5	17	1.64
22919407--22919443	10	3.7	10	92	0	65	27	0	21	51	1.48
22919491--22919541	27	1.9	26	88	4	75	39	0	9	50	1.35
22920784--22920906	63	2.0	63	90	0	192	24	28	17	29	1.98
22921445--22921510	33	2.1	31	85	5	87	42	0	3	54	1.15
22921524--22921565	19	2.2	19	87	8	59	61	2	0	35	1.09
22925124--22925195	30	2.4	32	80	17	77	40	1	1	56	1.16
22929789--22929830	3	14.7	3	82	9	52	61	0	2	35	1.09
22945441--22945503	24	2.6	23	82	7	63	63	1	4	30	1.24
22945517--22945563	22	2.2	21	85	11	60	59	2	0	38	1.09
22951667--22951711	22	2.0	22	100	0	90	44	22	15	17	1.86
22954456--22955244	325	2.5	317	79	7	794	33	15	23	28	1.95
22957054--22957110	27	2.1	27	96	0	105	21	17	5	56	1.60
22957289--22957344	2	28.0	2	88	0	85	44	0	5	50	1.25
22981071--22981104	2	17.0	2	100	0	68	50	0	0	50	1.00
22982257--22982299	12	3.4	13	84	12	54	34	9	0	55	1.32
22984237--22984266	13	2.3	13	94	0	51	40	0	0	60	0.97
22984391--22984429	18	2.1	19	90	4	62	51	0	0	48	1.00
22984362--22984417	27	2.0	29	89	6	89	48	1	0	50	1.11
22984362--22984426	30	2.2	30	84	13	82	47	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22984425--22984469	16	2.8	16	96	3	81	71	0	0	28	0.87
22987451--22987675	16	14.4	16	71	16	143	20	0	32	46	1.55
22987521--22987604	23	3.6	23	71	9	80	25	0	30	44	1.54
22987524--22987598	24	3.2	24	70	11	82	26	0	33	40	1.57
22987505--22987674	47	3.6	47	90	4	245	21	0	31	47	1.51
22987443--22987678	31	7.6	31	70	17	116	22	0	32	45	1.56
22989229--22989273	18	2.4	18	85	7	54	33	0	0	66	0.92
23009510--23009542	15	2.1	16	88	5	50	75	6	12	6	1.16
23016533--23016595	27	2.4	26	81	2	72	53	1	9	34	1.43
23016693--23016745	27	2.0	28	85	7	74	50	1	0	47	1.12
23020982--23021013	15	2.0	17	88	11	50	18	6	0	75	1.01
23022192--23022224	16	2.1	15	94	5	57	57	0	0	42	0.98
23027979--23028013	3	12.0	3	87	6	54	65	0	34	0	0.93
23031887--23031937	22	2.4	22	90	3	77	47	3	0	49	1.20
23036321--23036563	123	2.0	122	93	2	416	53	16	8	21	1.70
23038973--23039051	24	3.2	24	82	3	104	56	7	3	31	1.45
23038973--23039059	25	3.5	24	77	16	97	55	8	3	33	1.46
23039152--23039237	43	2.0	43	93	0	145	38	2	2	56	1.25
23053321--23053555	88	2.7	86	79	8	224	26	14	16	42	1.87
23053416--23054108	183	3.8	183	78	10	652	29	13	18	38	1.89
23053294--23054108	92	8.9	92	78	8	695	28	14	18	38	1.90
23057473--23057551	30	2.6	30	86	7	99	46	6	13	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23065669--23065708	20	1.9	22	85	10	57	75	2	5	17	1.10
23067128--23067173	24	2.0	24	86	4	67	28	8	0	63	1.24
23067387--23067428	22	1.9	22	95	0	75	16	0	30	52	1.44
23067396--23067511	15	7.7	15	75	6	56	17	0	31	50	1.52
23067408--23067445	16	2.5	15	91	4	58	21	0	26	52	1.47
23067487--23067542	15	3.7	15	83	7	60	17	3	23	55	1.58
23067473--23067543	15	4.8	15	73	14	58	19	2	23	53	1.58
23067419--23067553	15	9.0	15	71	12	57	20	2	28	49	1.60
23067524--23067589	32	2.1	32	82	5	80	18	3	28	50	1.62
23067562--23067619	15	3.9	15	73	8	55	20	5	29	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129