Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  128  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23468282--23468321
17
2.4
17
84
16
57
30
0
0
70
0.88
23468281--23468319
19
2.1
19
90
9
62
28
0
0
71
0.86
23468360--23468419
4
14.8
4
80
13
61
71
5
0
23
1.05
23469490--23469546
3
19.0
3
100
0
114
66
0
0
33
0.92
23469545--23469571
3
9.0
3
100
0
54
33
0
33
33
1.58
23470373--23470410
20
1.9
20
88
0
58
7
10
5
76
1.15
23470369--23470425
24
2.5
21
81
13
60
8
7
3
80
1.00
23470360--23470429
12
5.9
12
75
18
51
8
5
2
82
0.91
23470518--23470606
27
3.2
27
63
20
65
39
6
16
37
1.76
23470502--23470849
59
5.9
57
84
10
457
44
8
14
33
1.75
23470502--23470849
123
2.9
117
88
7
515
44
8
14
33
1.75
23470501--23470849
182
1.9
180
89
6
544
44
8
14
32
1.75
23474678--23474714
12
3.1
12
88
0
56
83
0
16
0
0.64
23475918--23476237
40
8.0
39
93
4
532
22
18
20
38
1.94
23475918--23476237
79
4.0
79
97
2
570
22
18
20
38
1.94
23475918--23476237
119
2.7
118
93
4
534
22
18
20
38
1.94
23476243--23476344
1
102.0
1
98
0
195
99
0
0
0
0.08
23476531--23476568
16
2.4
16
80
20
53
26
0
5
68
1.11
23476533--23476599
23
3.0
21
76
19
66
32
0
2
64
1.09
23477967--23478001
3
11.3
3
93
6
61
68
0
0
31
0.90
23477967--23477998
16
2.0
16
100
0
64
68
0
0
31
0.90
23480213--23480295
39
2.1
39
88
0
121
10
2
13
73
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23480777--23480818
21
2.0
21
85
4
57
16
33
21
28
1.95
23483223--23483285
11
6.0
11
71
23
55
58
17
6
17
1.58
23486025--23486071
3
16.0
3
95
4
87
68
0
0
31
0.90
23486564--23486696
34
3.9
33
74
12
124
32
20
19
27
1.97
23486564--23486736
70
2.4
72
83
3
206
34
18
18
28
1.95
23486407--23486902
241
2.1
241
84
4
644
35
16
17
30
1.93
23500487--23500548
3
21.3
3
80
6
74
66
4
0
29
1.12
23500555--23500622
26
2.7
26
77
4
77
72
10
2
14
1.23
23504841--23504871
16
1.9
16
100
0
62
32
0
22
45
1.53
23504979--23505042
28
2.3
28
100
0
128
37
4
10
46
1.60
23506236--23506267
13
2.5
13
89
0
55
40
0
18
40
1.51
23508460--23508519
26
2.3
26
82
8
68
36
6
10
46
1.64
23508531--23508557
12
2.2
12
100
0
54
22
0
0
77
0.76
23508995--23509034
20
2.1
19
85
4
53
2
20
0
77
0.88
23508999--23509032
16
2.1
16
88
5
50
2
20
0
76
0.92
23509785--23509822
3
12.7
3
100
0
76
65
0
0
34
0.93
23512458--23512502
20
2.2
20
84
7
56
11
6
4
77
1.09
23520832--23520871
16
2.5
16
91
0
62
42
20
0
37
1.52
23524920--23525063
52
2.8
51
81
4
146
51
4
13
31
1.59
23525253--23525762
257
2.0
257
83
3
643
28
8
20
42
1.80
23534474--23534503
14
2.2
14
94
5
53
30
3
0
66
1.07
23535726--23535755
3
10.3
3
92
7
53
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23538667--23538783
44
2.7
43
77
5
119
45
13
12
28
1.80
23538643--23538939
86
3.5
86
78
6
266
44
15
13
27
1.83
23538680--23539088
43
9.5
44
74
9
254
43
15
13
27
1.84
23538684--23539062
44
8.8
43
74
8
207
43
15
14
26
1.85
23540209--23540241
9
3.7
9
92
8
50
90
0
0
9
0.44
23540209--23540234
11
2.4
11
100
0
52
92
0
0
7
0.39
23540553--23540630
8
10.2
8
77
14
60
74
0
20
5
1.01
23540563--23540630
14
4.5
15
73
12
59
76
0
19
4
0.95
23540563--23540595
13
2.5
13
95
0
57
87
0
12
0
0.53
23541813--23541920
42
2.7
40
84
11
164
23
19
17
39
1.92
23541862--23541976
56
2.0
56
88
8
171
24
22
20
32
1.98
23541941--23542079
40
3.5
38
77
19
142
26
20
19
33
1.96
23541941--23542079
39
3.5
37
76
19
131
26
20
19
33
1.96
23542117--23542207
9
10.6
9
86
9
127
87
9
0
2
0.61
23542118--23542207
17
5.3
17
87
10
130
87
10
0
2
0.62
23542117--23542207
26
3.5
26
92
1
148
87
9
0
2
0.61
23542116--23542207
1
92.0
1
78
0
85
88
9
0
2
0.61
23542127--23542207
8
9.6
8
87
12
110
87
11
0
1
0.60
23542407--23542497
12
8.5
11
68
22
59
27
0
8
63
1.23
23543093--23543136
20
2.2
20
84
4
54
22
27
20
29
1.99
23543578--23543851
58
4.7
58
85
7
346
44
8
13
33
1.74
23546147--23546173
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23547137--23547164
3
9.3
3
100
0
56
67
0
0
32
0.91
23549372--23549454
39
2.1
39
88
0
121
10
2
13
73
1.19
23549937--23549978
21
2.0
21
85
4
57
16
33
21
28
1.95
23552375--23552437
11
6.0
11
71
23
55
58
17
6
17
1.58
23553497--23553630
50
2.6
51
79
5
121
41
13
6
38
1.71
23555168--23555210
3
14.0
3
95
4
77
67
0
0
32
0.91
23555701--23555873
70
2.4
72
83
3
206
34
18
17
28
1.94
23555699--23555833
34
3.9
34
73
7
128
32
20
18
28
1.96
23555789--23556118
168
1.9
171
86
4
470
33
16
17
32
1.92
23555838--23556172
168
2.0
168
84
4
444
35
15
17
31
1.91
23556160--23556277
34
3.4
34
75
6
94
37
16
14
32
1.88
23558495--23559390
445
2.0
444
94
0
1549
32
16
12
38
1.86
23565892--23565921
15
2.1
15
93
6
53
36
20
13
30
1.90
23566285--23566317
12
2.8
12
82
17
50
30
12
15
42
1.83
23567834--23567858
12
2.1
12
100
0
50
36
0
0
64
0.94
23579133--23579188
3
19.3
3
78
7
62
66
5
0
28
1.14
23579195--23579262
26
2.7
26
77
4
77
72
10
2
14
1.23
23580115--23580157
3
14.3
3
100
0
86
67
0
0
32
0.91
23580405--23580457
21
2.5
21
75
3
52
54
0
5
39
1.24
23583490--23583520
16
1.9
16
100
0
62
32
0
22
45
1.53
23584850--23584881
13
2.5
13
89
0
55
40
0
18
40
1.51
23586913--23586950
3
12.7
3
100
0
76
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23587150--23587186
12
2.9
12
92
8
56
21
0
2
75
0.92
23587625--23587664
20
2.1
19
85
4
53
2
20
0
77
0.88
23587629--23587662
16
2.1
16
88
5
50
2
20
0
76
0.92
23588433--23588482
3
16.7
3
100
0
100
66
0
0
34
0.92
23591151--23591193
20
2.2
20
83
8
52
11
6
4
76
1.13
23599410--23599463
28
2.0
27
85
3
72
46
12
7
33
1.70
23599446--23599485
17
2.3
18
87
12
57
45
15
7
32
1.74
23600501--23600564
32
2.0
31
87
9
92
26
14
15
43
1.85
23603566--23603705
52
2.7
52
79
2
129
50
5
14
29
1.65
23603826--23603918
45
2.1
44
93
2
159
30
3
32
34
1.74
23603943--23604454
257
2.0
257
85
1
686
28
6
20
44
1.77
23612987--23613023
3
12.3
3
100
0
74
32
0
0
67
0.91
23613217--23613249
12
2.5
13
90
9
50
21
0
3
75
0.93
23613291--23613319
14
2.1
14
93
6
51
27
3
0
68
1.05
23614545--23614581
3
12.3
3
100
0
74
64
0
0
35
0.94
23617517--23617988
43
10.9
43
72
9
210
43
15
13
27
1.84
23617546--23617663
44
2.7
43
76
6
112
44
13
13
27
1.81
23617521--23617822
87
3.5
86
79
6
261
43
14
14
27
1.84
23617691--23618015
87
3.8
87
76
9
236
44
16
13
26
1.84
23617871--23618008
43
3.2
42
78
5
134
45
14
13
26
1.81
23618299--23618336
8
4.9
8
83
6
51
10
5
0
84
0.77
23618299--23618336
15
2.4
16
91
4
60
10
5
0
84
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23625809--23625837
8
3.6
8
100
0
58
10
0
0
89
0.48
23626366--23626419
27
2.0
27
92
0
90
27
24
18
29
1.98
23628238--23628296
24
2.5
23
81
8
64
50
13
1
33
1.52
23631400--23632916
758
2.0
757
94
0
2685
40
11
15
33
1.83
23634040--23634102
24
2.6
24
85
7
83
42
12
9
34
1.76
23637472--23637510
19
2.0
19
85
5
51
33
0
2
64
1.08
23637981--23638016
18
2.0
18
88
0
54
38
5
0
55
1.23
23638018--23638140
43
2.9
41
68
15
106
40
3
4
52
1.37
23637983--23638140
86
1.9
84
90
5
228
39
3
3
53
1.33
23638120--23638181
34
1.9
32
84
12
83
45
4
3
46
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129