genome.fa.s13.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  14  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2290845--2290904	28	2.0	28	87	9	84	53	0	5	41	1.23
2290888--2290943	28	2.0	29	85	3	78	50	0	5	44	1.25
2291142--2291193	3	17.3	3	100	0	104	65	0	0	34	0.93
2294857--2294964	30	3.7	29	80	6	119	35	9	10	45	1.70
2294907--2294965	31	1.9	30	89	3	91	35	11	8	44	1.72
2295110--2295135	12	2.2	12	100	0	52	23	15	15	46	1.83
2302683--2302708	2	13.0	2	100	0	52	50	0	0	50	1.00
2303003--2303079	12	6.4	12	70	16	52	32	2	0	64	1.07
2303047--2303098	23	2.4	22	83	6	61	30	0	3	65	1.10
2303497--2303567	29	2.4	30	81	9	83	52	0	2	45	1.15
2303667--2303736	19	3.6	19	70	11	61	47	0	0	52	1.00
2305551--2305601	25	2.1	25	85	10	70	33	1	0	64	1.05
2306295--2306328	16	2.1	16	88	0	50	61	0	0	38	0.96
2307107--2307144	19	2.0	19	89	0	58	55	2	0	42	1.14
2308011--2308101	30	3.1	29	81	12	96	48	0	1	50	1.08
2312874--2312923	20	2.5	20	90	6	75	50	2	0	48	1.12
2315607--2315669	21	3.2	20	77	16	53	38	0	1	60	1.07
2317013--2317085	37	2.0	37	97	0	137	32	13	20	32	1.92
2329459--2329490	16	2.0	16	93	0	55	0	15	3	81	0.82
2332578--2332610	2	16.5	2	100	0	66	51	0	0	48	1.00
2336668--2336723	19	3.1	18	78	12	62	51	1	1	44	1.22
2337585--2337626	21	2.0	21	86	9	59	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2337812--2337840	11	2.5	12	88	11	51	37	0	0	62	0.96
2338941--2338988	26	1.9	24	84	16	62	29	6	6	58	1.47
2341226--2341267	21	2.0	21	86	4	59	50	4	0	45	1.23
2342692--2342722	7	4.4	7	100	0	62	0	29	58	12	1.35
2343209--2343251	20	2.2	19	87	4	59	48	0	0	51	1.00
2343280--2343340	21	3.0	19	75	15	59	59	1	3	36	1.24
2344547--2344575	7	4.1	7	100	0	58	68	0	0	31	0.89
2356250--2356296	22	2.1	23	84	4	60	46	2	0	51	1.13
2367020--2367206	100	1.9	102	87	6	283	34	21	13	29	1.93
2370879--2370922	11	3.8	11	82	11	61	70	0	0	29	0.88
2370873--2370917	15	2.9	15	90	3	63	71	0	0	28	0.87
2370883--2370931	24	2.0	24	92	0	80	65	0	0	34	0.93
2370925--2370981	22	2.4	24	77	19	66	56	0	0	43	0.99
2370931--2370979	24	2.1	22	85	14	64	55	0	0	44	0.99
2371952--2371985	18	1.9	17	88	5	50	32	0	0	67	0.91
2372052--2372116	18	3.8	16	75	24	53	53	7	0	38	1.30
2377478--2377524	24	2.0	24	87	8	69	36	10	42	10	1.74
2378086--2378123	6	6.5	6	87	6	60	31	2	0	65	1.06
2378097--2378144	18	2.6	18	80	3	51	39	0	4	56	1.19
2379500--2379550	12	4.5	11	79	13	50	41	5	0	52	1.25
2379479--2379537	19	3.1	19	69	16	50	44	3	0	52	1.17
2379504--2379554	25	2.1	23	85	7	66	43	3	0	52	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2385028--2385086	19	3.1	19	69	16	50	42	1	3	52	1.28
2385021--2385099	25	3.4	24	67	21	60	40	1	5	53	1.31
2385357--2385970	164	3.7	164	93	0	1023	31	20	24	23	1.98
2385354--2386308	328	2.8	340	87	6	1285	30	20	25	23	1.99
2385934--2386004	34	2.1	34	97	0	133	39	18	19	22	1.92
2385770--2386169	199	2.0	198	96	0	728	32	19	24	23	1.98
2385606--2386308	363	1.9	362	95	0	1271	30	20	25	23	1.98
2385968--2386306	164	2.1	165	95	0	608	30	20	25	23	1.98
2386848--2386893	24	1.9	24	95	0	83	32	8	28	30	1.87
2387963--2388026	33	1.9	33	83	0	83	35	4	1	57	1.29
2391942--2391980	2	19.5	2	100	0	78	51	0	0	48	1.00
2395798--2395840	12	3.6	11	79	14	50	41	0	0	58	0.98
2402650--2402696	18	2.5	19	82	6	51	59	4	0	36	1.17
2405760--2405834	31	2.4	31	80	10	82	48	4	1	46	1.29
2405805--2405869	27	2.5	26	85	7	78	47	0	1	50	1.10
2405805--2405886	27	3.1	27	78	15	75	48	0	1	50	1.08
2411767--2411799	15	2.1	16	88	5	50	18	0	9	72	1.10
2412370--2412395	12	2.2	12	100	0	52	76	0	0	23	0.78
2413491--2413531	21	2.0	21	95	0	73	21	12	31	34	1.91
2415914--2415965	27	1.9	27	84	7	70	40	0	44	15	1.46
2425736--2425762	2	13.5	2	100	0	54	48	0	0	51	1.00
2430835--2430864	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2441107--2441149	22	2.0	21	86	8	61	51	11	0	37	1.39
2441152--2441183	14	2.1	16	88	11	50	46	0	0	53	1.00
2447077--2447354	75	3.7	74	78	5	243	30	7	37	24	1.83
2455301--2455358	22	2.9	19	76	14	62	37	0	0	62	0.96
2455310--2455352	22	2.0	22	86	8	63	37	0	0	62	0.95
2455332--2455400	36	1.9	36	84	0	93	28	1	0	69	0.97
2455350--2455400	18	2.8	20	80	14	65	25	1	0	72	0.95
2456754--2456803	23	2.1	24	82	14	59	52	2	4	42	1.31
2456799--2456856	29	2.0	30	86	3	82	39	10	0	50	1.37
2463983--2464278	147	2.0	148	94	0	522	36	19	10	34	1.86
2465459--2465497	20	2.0	20	85	10	53	51	0	0	48	1.00
2465476--2465523	22	2.1	24	85	14	66	47	0	0	52	1.00
2471204--2471267	33	1.9	33	100	0	128	31	25	15	28	1.96
2480475--2480629	83	1.9	83	91	0	256	31	5	25	37	1.80
2482634--2482683	23	2.2	23	89	7	75	34	10	8	48	1.66
2490021--2490203	62	2.9	61	84	10	237	42	5	3	49	1.42
2490001--2490231	62	3.8	62	79	7	186	41	6	5	45	1.54
2496166--2496229	33	2.0	34	82	14	82	43	3	4	48	1.39
2499506--2499605	50	2.0	50	92	0	164	43	14	18	25	1.87
2500976--2501078	50	2.1	49	88	1	161	33	20	14	32	1.93
2512955--2513049	22	4.3	22	75	15	88	48	2	4	45	1.33
2512989--2513058	23	3.1	23	69	17	58	51	2	4	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2513317--2513355	19	2.1	18	85	4	51	33	0	2	64	1.08
2521825--2521849	1	25.0	1	100	0	50	0	0	0	100	0.00
2523818--2523856	20	1.9	21	89	5	62	46	0	2	51	1.14
2531561--2531616	28	2.0	28	89	0	85	48	7	19	25	1.74
2534768--2534964	66	3.0	66	84	4	245	18	21	22	36	1.95
2535625--2535655	2	15.5	2	93	0	53	45	0	0	54	0.99
2535844--2535881	2	19.5	2	86	5	51	47	2	0	50	1.15
2536125--2536371	81	3.0	80	88	5	354	49	11	3	36	1.55
2538564--2538603	16	2.5	16	91	0	62	12	5	0	82	0.82
2540316--2540351	18	1.9	18	88	5	54	66	8	0	25	1.19
2540488--2540525	3	13.0	3	94	5	69	34	0	0	65	0.93
2540488--2540521	17	2.0	17	100	0	68	35	0	0	64	0.94
2544368--2544433	31	2.1	32	82	2	80	74	3	4	18	1.12
2544420--2544445	10	2.6	10	100	0	52	92	0	0	7	0.39
2550104--2550139	2	18.0	2	100	0	72	50	0	0	50	1.00
2553050--2553129	18	4.4	18	76	14	58	75	2	3	18	1.07
2553055--2553125	5	13.8	5	72	16	56	74	2	4	18	1.10
2553070--2553125	11	4.8	11	79	12	58	75	3	5	16	1.13
2553055--2553126	6	11.8	6	73	18	51	75	2	4	18	1.09
2553542--2553574	17	1.9	17	88	11	50	21	0	3	75	0.93
2554500--2554572	35	2.1	34	82	7	85	17	6	6	68	1.35
2554499--2554573	12	6.4	12	76	17	61	17	6	6	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2554491--2554575	11	7.5	11	76	16	68	15	5	8	70	1.31
2554998--2555223	55	4.1	55	76	10	210	53	7	15	23	1.68
2555025--2555223	55	3.6	54	76	11	215	53	7	16	23	1.67
2555001--2555215	111	1.9	112	93	2	371	50	7	16	25	1.71
2559234--2559278	11	4.5	11	78	18	53	75	0	15	8	1.03
2559241--2559277	19	1.9	19	94	0	65	72	0	16	10	1.10
2559225--2559294	25	2.8	25	78	4	70	74	0	15	10	1.07
2560140--2560183	23	1.9	23	86	9	63	47	4	20	27	1.69
2560511--2560606	22	4.5	21	72	11	70	35	8	19	36	1.82
2560631--2560732	44	2.4	44	85	6	129	36	11	18	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129