genome.fa.s13.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  24  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4891655--4891696	19	2.2	20	86	4	59	71	0	4	23	1.05
4891939--4892387	43	10.3	43	78	6	424	45	16	12	25	1.83
4891939--4892383	87	5.1	87	80	6	449	45	15	12	25	1.82
4892974--4893061	21	4.1	21	88	1	122	39	15	6	37	1.75
4893452--4893637	79	2.4	79	85	3	232	30	24	8	36	1.85
4894215--4894270	18	2.8	20	79	15	64	5	17	1	75	1.09
4897504--4898129	59	10.6	58	80	8	690	35	13	6	44	1.69
4897588--4897627	16	2.4	17	83	8	55	45	0	5	50	1.23
4897502--4898129	118	5.3	116	87	4	841	35	13	6	44	1.70
4898160--4898214	6	9.5	6	77	15	62	80	0	5	14	0.89
4898160--4898214	17	3.2	17	84	7	67	80	0	5	14	0.89
4898160--4898214	11	4.8	11	79	20	60	80	0	5	14	0.89
4898785--4898813	10	2.7	11	94	5	51	41	10	10	37	1.73
4899101--4899154	9	5.4	9	77	16	54	77	1	1	18	0.95
4899098--4899188	22	4.3	21	77	16	91	70	3	4	21	1.20
4899151--4899190	11	3.5	12	75	25	50	62	5	5	27	1.37
4899098--4899188	41	2.2	42	84	7	114	70	3	4	21	1.20
4899496--4899953	152	2.9	158	91	3	748	37	17	15	29	1.90
4899998--4900030	1	33.0	1	100	0	66	100	0	0	0	0.00
4900354--4900400	19	2.5	19	82	0	58	21	19	29	29	1.97
4901016--4901041	3	8.7	3	100	0	52	69	0	0	30	0.89
4901204--4901261	20	3.0	20	92	2	91	22	27	31	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4901301--4901332	13	2.4	14	94	5	57	87	0	12	0	0.54
4901411--4901484	5	14.6	5	76	18	57	78	2	1	17	0.94
4901423--4901504	11	7.5	11	75	17	64	78	2	4	14	1.03
4901411--4901493	13	6.4	12	72	16	51	78	2	2	16	0.97
4901411--4901493	6	13.8	6	75	12	73	78	2	2	16	0.97
4901689--4901859	41	4.1	41	86	3	189	35	23	18	23	1.96
4902868--4902915	24	2.0	24	87	4	69	10	6	0	83	0.81
4902880--4902918	8	4.7	9	90	9	57	12	7	0	79	0.93
4908935--4908966	13	2.5	13	100	0	64	15	18	43	21	1.87
4909683--4909721	16	2.4	16	86	4	51	41	0	7	51	1.31
4909598--4910169	58	9.7	57	81	8	655	34	11	8	45	1.70
4910185--4910254	20	3.5	20	77	11	70	80	2	4	12	0.98
4910212--4910265	26	2.0	28	89	10	85	81	1	3	12	0.91
4910193--4910265	11	6.8	11	77	16	57	79	1	5	13	0.97
4910733--4910939	48	4.3	48	79	7	188	29	9	19	41	1.82
4910733--4910965	96	2.4	94	79	2	241	29	10	19	40	1.85
4913517--4913720	66	3.0	70	91	7	346	37	14	23	25	1.93
4913821--4913884	32	2.0	31	85	11	85	54	0	1	43	1.09
4913946--4913994	21	2.3	22	86	10	66	46	4	4	44	1.41
4913981--4914042	31	1.9	33	87	6	92	50	1	0	48	1.10
4914019--4914084	27	2.4	28	80	7	82	50	4	0	45	1.22
4913986--4914069	32	2.4	35	83	13	95	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4918702--4918747	23	1.9	24	86	8	67	47	0	2	50	1.13
4918886--4918939	12	4.4	13	84	11	62	57	1	0	40	1.09
4919133--4919193	30	2.1	30	87	3	88	14	18	16	50	1.78
4933394--4933429	18	2.0	18	89	10	56	41	0	0	58	0.98
4933988--4934051	32	2.0	31	85	11	85	54	0	1	43	1.09
4934113--4934161	21	2.3	22	86	10	66	46	4	4	44	1.41
4934148--4934245	32	3.0	33	81	11	96	50	2	0	47	1.12
4934188--4934253	33	2.0	32	85	8	89	53	1	0	45	1.09
4935561--4935610	18	2.6	19	72	27	52	42	4	0	54	1.19
4940255--4940284	2	15.0	2	92	0	51	53	0	0	46	1.00
4950957--4950995	14	2.7	15	84	15	55	38	2	0	58	1.12
4951280--4951334	29	1.9	29	81	3	67	18	21	18	41	1.90
4951673--4951702	15	1.9	16	93	6	53	10	10	0	80	0.92
4952413--4952462	26	1.9	26	84	8	66	32	26	18	24	1.97
4952567--4952592	11	2.4	11	100	0	52	57	0	0	42	0.98
4955241--4955291	25	2.0	25	84	7	66	52	0	1	45	1.12
4955705--4955748	22	2.0	21	82	13	52	47	4	4	43	1.44
4955925--4955962	19	2.1	18	95	5	67	39	0	0	60	0.97
4956707--4956744	2	19.0	2	94	0	67	52	0	0	47	1.00
4956698--4956742	10	4.5	10	91	5	56	53	2	0	44	1.13
4958114--4958139	2	13.0	2	100	0	52	50	0	0	50	1.00
4963833--4963880	12	3.6	14	76	18	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4968919--4968944	3	8.7	3	100	0	52	30	0	0	69	0.89
4971377--4971425	3	16.3	3	100	0	98	32	0	0	67	0.91
4971593--4971627	13	2.7	13	90	0	61	82	5	0	11	0.82
4979654--4979706	27	2.0	26	85	3	70	49	1	0	49	1.12
4979665--4979707	19	2.2	20	95	4	79	48	0	0	51	1.00
4979746--4979824	29	2.6	28	73	16	70	51	6	0	41	1.27
4979807--4979845	17	2.3	17	86	0	51	74	2	2	20	1.06
4986000--4986252	132	1.9	131	82	5	314	42	7	4	45	1.53
4986478--4986542	26	2.5	26	89	0	94	46	15	0	38	1.46
4986476--4986556	26	3.3	26	83	6	80	46	17	0	35	1.48
4989253--4989327	39	1.9	39	91	5	125	33	33	4	29	1.76
4989279--4989605	162	2.0	165	88	1	489	31	18	13	35	1.90
4992011--4992035	3	8.3	3	100	0	50	64	0	0	36	0.94
4992217--4992274	15	3.9	14	77	8	62	50	27	1	20	1.58
4992217--4992297	15	5.5	14	75	11	56	49	29	1	19	1.56
4992276--4992319	22	2.0	22	86	8	63	47	31	0	20	1.50
4992277--4992327	22	2.3	22	80	10	59	50	29	0	19	1.48
4992310--4992391	14	5.7	14	64	16	51	51	28	1	19	1.55
4992295--4992387	30	3.2	28	78	4	105	49	29	1	20	1.56
4992310--4992444	30	4.5	30	75	6	96	46	31	2	19	1.62
4994536--4994580	13	3.5	13	80	20	58	84	2	11	2	0.80
4995916--4995978	28	2.2	28	85	0	81	23	22	4	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4995909--4995964	4	14.0	4	76	0	58	23	25	3	48	1.67
4999283--4999464	91	2.0	92	98	1	357	63	1	24	10	1.33
5000324--5000669	33	10.8	32	68	13	133	30	20	14	35	1.92
5000343--5000641	66	4.7	65	72	11	206	28	21	15	34	1.93
5000364--5000506	61	2.3	61	84	3	180	26	23	13	35	1.93
5001360--5001402	22	2.0	22	85	0	59	23	20	20	34	1.96
5001412--5001518	37	2.9	37	80	0	124	19	23	12	44	1.84
5001400--5001539	37	3.8	36	74	4	118	17	25	15	42	1.88
5001492--5001756	112	2.4	111	80	5	293	13	22	17	46	1.82
5001448--5001756	37	8.3	37	70	9	155	13	22	17	46	1.83
5001703--5001798	38	2.6	37	83	3	122	12	25	18	43	1.85
5001946--5002232	36	8.0	36	64	16	105	18	20	16	44	1.86
5001845--5002992	109	10.6	108	76	5	779	19	19	14	46	1.84
5001896--5002981	433	2.5	431	80	5	1192	19	19	14	46	1.84
5001860--5002992	324	3.5	325	77	6	1064	19	19	14	46	1.84
5002923--5003006	37	2.3	36	84	9	109	16	20	14	48	1.80
5003277--5003311	3	11.7	3	100	0	70	65	0	0	34	0.93
5003828--5003879	9	5.4	9	77	8	50	17	1	1	78	0.93
5003948--5004015	3	22.7	3	75	11	50	73	0	2	23	0.97
5003952--5004008	18	3.5	15	75	15	60	77	0	3	19	0.92
5004287--5004344	15	3.9	15	82	8	75	50	25	0	24	1.50
5004287--5004352	15	4.6	14	78	12	71	50	27	0	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5004287--5004352	29	2.3	29	84	5	89	50	27	0	22	1.50
5004342--5004385	21	2.0	23	86	8	65	47	29	0	22	1.51
5004347--5004397	22	2.3	22	76	10	59	50	25	0	23	1.49
5005158--5005229	36	2.0	36	97	0	135	44	6	8	40	1.61
5024171--5024198	1	28.0	1	100	0	56	100	0	0	0	0.00
5027541--5027755	111	1.9	110	90	0	340	29	4	19	46	1.68
5030582--5030614	2	16.5	2	100	0	66	51	0	48	0	1.00
5032927--5032966	12	3.3	12	82	0	53	40	2	5	52	1.37
5033397--5033467	33	2.2	33	86	0	97	36	12	2	47	1.56
5035746--5035775	5	6.2	5	92	7	53	80	0	0	20	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129