genome.fa.s13.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  27  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5463105--5463145	10	3.7	11	87	9	57	78	4	0	17	0.93
5463947--5463976	6	5.0	6	100	0	60	16	0	0	83	0.65
5463935--5463976	18	2.3	18	87	0	57	14	7	0	78	0.95
5470086--5470168	21	4.2	19	71	17	62	55	1	0	43	1.07
5470108--5470173	15	4.2	16	71	22	59	54	0	0	45	0.99
5470169--5470211	16	2.7	15	79	10	50	51	2	0	46	1.13
5500661--5500689	2	14.5	2	100	0	58	48	0	51	0	1.00
5504288--5504338	10	4.7	10	77	17	57	1	9	27	60	1.39
5504273--5504332	24	2.5	24	94	0	102	3	10	30	56	1.48
5513681--5513826	52	2.8	52	86	4	188	25	26	8	39	1.85
5514099--5514180	24	3.4	24	79	1	83	23	35	8	32	1.85
5514192--5514301	31	3.5	31	86	7	159	24	24	22	28	2.00
5516200--5516237	20	1.9	20	84	10	51	36	0	2	60	1.11
5516205--5516264	29	2.2	28	83	13	81	38	0	1	60	1.07
5516207--5516282	29	2.7	28	80	15	77	39	1	3	55	1.27
5516715--5516779	16	3.8	17	74	12	62	53	1	0	44	1.09
5519280--5519323	12	3.5	12	87	9	61	36	0	0	63	0.95
5522414--5522461	24	2.0	24	100	0	96	62	16	8	12	1.53
5530099--5530135	14	2.5	16	83	16	53	43	0	0	56	0.99
5531626--5531669	20	2.1	22	83	8	56	34	0	0	65	0.93
5539254--5539337	11	7.8	11	75	18	70	52	8	1	38	1.39
5539254--5539338	21	4.0	21	82	8	102	51	9	1	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5539215--5539327	42	2.7	42	80	4	122	50	7	3	38	1.47
5539262--5539338	10	7.4	9	76	21	55	50	9	1	38	1.42
5552667--5552776	56	2.0	56	83	7	143	31	12	9	46	1.73
5558145--5558338	81	2.4	81	78	5	205	38	13	13	34	1.84
5558650--5558702	23	2.3	23	83	6	63	37	13	16	32	1.88
5565317--5565359	15	2.9	15	80	10	52	76	2	0	20	0.89
5566676--5566704	15	2.0	15	93	6	51	65	0	13	20	1.26
5567940--5567997	15	3.8	15	80	8	64	24	5	24	46	1.72
5567940--5567997	30	1.9	30	85	3	80	24	5	24	46	1.72
5569053--5569086	14	2.4	14	90	5	50	2	14	0	82	0.79
5570464--5570493	15	2.0	15	93	0	51	16	6	36	40	1.75
5574674--5574737	4	16.2	4	73	15	53	17	1	7	73	1.14
5574665--5574737	27	2.7	26	82	6	74	16	1	9	72	1.17
5574674--5574737	15	3.9	15	75	18	56	17	1	7	73	1.14
5580344--5580371	3	9.3	3	100	0	56	32	0	0	67	0.91
5581302--5581427	9	14.1	9	87	1	83	53	0	11	35	1.37
5581325--5581428	3	35.0	3	92	1	120	57	0	6	35	1.25
5581427--5581454	3	9.3	3	100	0	56	32	0	0	67	0.91
5592124--5592170	21	2.2	21	92	0	76	29	21	6	42	1.77
5592995--5593133	41	3.6	40	74	14	130	33	14	10	41	1.80
5593005--5593078	34	2.2	34	87	4	105	35	17	9	37	1.82
5593038--5593163	41	3.1	39	80	10	119	33	12	10	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5593142--5593230	42	2.1	43	81	10	103	30	13	15	40	1.86
5593370--5593425	3	18.7	3	100	0	112	33	0	0	66	0.92
5593419--5593482	32	1.9	33	81	6	76	14	10	4	70	1.31
5594263--5594348	7	11.6	7	76	22	61	11	3	3	81	0.94
5594286--5594348	6	10.7	6	75	17	53	14	0	4	80	0.86
5594273--5594342	19	3.6	19	76	16	54	12	2	4	80	0.98
5594356--5594408	3	17.7	3	92	0	88	35	0	32	32	1.58
5594435--5594475	3	13.7	3	94	0	73	31	0	2	65	1.05
5594555--5594590	3	12.0	3	100	0	72	66	0	0	33	0.92
5595055--5595096	20	2.0	21	86	13	61	69	7	2	21	1.25
5595957--5596017	17	3.5	17	70	12	52	49	1	0	49	1.10
5596068--5596723	232	2.8	231	86	4	944	42	11	4	41	1.62
5610387--5610445	29	2.0	29	86	0	82	49	0	5	45	1.24
5610387--5610453	29	2.4	28	82	7	73	47	0	4	47	1.22
5610801--5610839	18	2.1	19	85	4	53	28	15	0	56	1.40
5613665--5613706	21	2.0	21	100	0	84	57	14	14	14	1.66
5622212--5622246	18	2.0	18	88	5	54	42	0	0	57	0.99
5627200--5627256	30	1.9	30	82	10	73	36	12	1	49	1.51
5627782--5627807	6	4.3	6	100	0	52	15	38	30	15	1.88
5629259--5629320	30	2.0	31	84	9	83	40	1	1	56	1.19
5629285--5629340	26	2.2	26	81	9	62	48	1	0	50	1.11
5629589--5629629	18	2.3	18	82	0	55	51	7	0	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5629736--5629764	14	2.1	14	93	6	51	27	6	3	62	1.37
5639388--5639428	14	2.9	14	85	3	55	48	0	0	51	1.00
5639984--5640114	3	41.7	3	74	15	79	29	3	2	64	1.20
5640011--5640107	24	4.2	23	85	6	133	30	4	0	64	1.12
5640011--5640114	46	2.2	47	88	6	158	29	3	0	66	1.09
5641114--5641207	48	2.0	48	85	2	127	42	8	11	37	1.72
5641162--5641298	58	2.3	58	82	6	177	51	5	8	35	1.53
5641264--5641289	13	2.0	13	100	0	52	53	0	0	46	1.00
5641272--5641304	15	2.2	16	89	10	52	45	0	0	54	0.99
5641218--5641368	72	2.1	74	83	5	191	50	5	9	34	1.59
5641294--5641408	57	2.1	54	85	4	149	47	8	9	33	1.67
5641179--5641414	129	1.8	130	82	7	309	49	7	8	34	1.62
5641349--5641471	64	1.9	66	83	6	162	51	7	8	33	1.59
5641636--5641664	5	5.8	5	100	0	58	17	0	0	82	0.66
5645135--5645172	6	6.3	6	87	0	58	21	18	31	28	1.97
5649042--5649079	9	4.2	9	86	0	58	10	7	2	78	1.04
5652056--5652252	44	4.5	43	84	3	189	26	15	15	42	1.86
5652459--5652499	7	6.8	6	89	10	50	31	0	0	68	0.90
5652495--5652626	9	13.7	9	67	17	52	28	3	2	65	1.22
5652497--5652610	3	35.7	3	76	16	72	29	2	2	64	1.20
5652510--5652619	51	2.2	48	85	6	139	30	2	2	63	1.22
5652496--5652618	8	17.3	7	71	16	53	29	3	2	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5653461--5653498	3	12.7	3	89	10	60	31	0	0	68	0.90
5653455--5653561	12	8.7	12	73	16	60	25	1	4	68	1.19
5653530--5653562	5	6.4	5	93	6	57	18	0	0	81	0.68
5656222--5656297	37	2.1	37	100	0	152	26	25	7	40	1.82
5657335--5657618	75	3.8	75	82	8	328	25	14	21	38	1.91
5663951--5663995	22	2.0	23	82	4	56	57	0	4	37	1.19
5664193--5664223	2	15.5	2	100	0	62	51	0	0	48	1.00
5673368--5673394	4	6.8	4	100	0	54	51	22	0	25	1.48
5673833--5673895	24	2.6	24	76	0	72	12	39	22	25	1.89
5674064--5674246	24	7.6	24	84	4	201	14	43	19	22	1.88
5674064--5674237	48	3.6	48	83	0	222	15	43	19	21	1.87
5674064--5674237	72	2.4	72	85	0	240	15	43	19	21	1.87
5673836--5674848	351	2.9	351	94	0	1785	17	32	22	27	1.96
5674412--5674597	72	2.6	72	84	0	255	15	40	20	23	1.90
5674415--5674597	24	7.6	24	84	4	217	14	41	20	22	1.89
5674766--5674852	24	3.6	24	87	6	140	14	41	20	22	1.89
5674953--5675034	24	3.5	24	68	18	66	13	24	24	37	1.91
5675261--5675305	2	22.5	2	86	0	63	44	6	0	48	1.29
5675293--5677391	738	2.8	738	94	3	3568	27	20	20	31	1.97
5677449--5677609	84	2.0	81	87	6	234	20	26	8	44	1.80
5682610--5682715	30	3.5	30	76	2	106	52	2	5	38	1.40
5684192--5684222	16	1.9	16	100	0	62	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5690748--5690785	7	5.6	7	81	6	51	78	0	0	21	0.74
5690745--5690787	20	2.2	20	100	0	86	72	0	0	27	0.85
5690966--5690996	15	2.0	16	93	6	55	54	0	0	45	0.99
5705139--5705168	2	15.0	2	100	0	60	50	0	0	50	1.00
5706236--5706356	60	2.0	60	91	0	197	27	11	19	41	1.86
5709931--5709966	3	12.0	3	100	0	72	33	33	0	33	1.58
5711329--5711362	16	2.1	16	94	0	59	55	11	0	32	1.36
5721166--5721194	2	14.5	2	100	0	58	0	51	0	48	1.00
5721761--5721808	23	2.1	23	96	0	87	10	8	27	54	1.63
5729770--5729818	23	2.2	22	85	3	62	32	8	10	48	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129