genome.fa.s13.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  3  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427073--428069	507	2.0	505	82	3	1243	40	9	9	40	1.69
426912--428172	688	1.8	682	81	5	1551	40	9	8	40	1.69
427582--428092	181	2.8	178	80	7	507	40	9	9	40	1.70
428370--428704	168	2.0	169	80	6	387	44	11	8	35	1.71
428237--431223	361	8.4	356	71	10	904	42	9	8	39	1.69
428538--429533	181	5.5	180	77	5	816	42	10	9	37	1.72
429545--431606	181	11.4	181	74	6	1327	41	8	8	40	1.67
431619--432667	181	5.9	180	76	7	875	41	8	8	41	1.66
432785--433221	181	2.4	181	79	4	457	42	6	9	41	1.63
433070--433404	175	1.9	178	79	6	385	41	8	11	38	1.72
433572--435106	177	8.6	176	75	8	1138	42	10	7	40	1.66
434384--434416	18	1.9	17	88	11	50	39	6	6	48	1.53
434073--434980	178	5.1	173	75	8	609	41	10	7	40	1.67
434103--435098	181	5.6	179	73	9	705	42	10	7	40	1.67
435101--439329	358	11.8	352	72	12	867	41	9	8	40	1.68
435109--439344	181	23.6	180	75	9	2919	41	9	8	40	1.68
436033--439344	716	4.6	708	75	9	2293	41	10	8	39	1.69
435095--439322	897	4.7	890	75	10	2388	41	9	8	40	1.68
439375--440399	178	5.7	179	78	6	900	41	8	9	41	1.67
440004--440036	18	1.9	17	88	11	50	48	12	6	33	1.65
439517--440399	359	2.5	354	82	5	1004	40	8	8	41	1.67
440753--441885	181	6.3	180	76	5	880	41	7	10	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440763--441748	362	2.7	357	82	5	1097	41	7	10	41	1.67
441910--442640	177	4.2	177	72	12	556	39	8	10	41	1.70
442702--443616	181	5.2	177	74	11	623	40	7	10	41	1.68
442184--443181	510	2.0	494	81	8	1140	40	8	10	41	1.69
443641--443866	117	1.9	115	85	3	310	39	12	9	38	1.76
443749--445569	181	10.1	181	75	9	1333	40	7	9	41	1.67
443749--445575	543	3.4	532	78	7	1651	40	7	9	41	1.67
443749--445575	362	5.1	357	78	5	1582	40	7	9	41	1.67
445595--445627	18	1.9	17	88	11	50	39	6	6	48	1.53
445591--446218	181	3.6	177	73	10	527	38	11	8	41	1.72
445797--446104	163	1.9	163	85	2	422	37	11	9	40	1.75
445960--446517	300	1.9	300	83	1	724	37	11	8	42	1.71
446250--446673	181	2.3	181	80	2	458	40	10	8	41	1.69
446929--449383	181	13.7	180	74	10	553	40	9	8	40	1.69
447508--451092	181	19.8	180	74	9	1909	40	9	8	40	1.70
446697--451097	362	12.2	356	73	11	2596	41	9	8	40	1.69
448965--449012	17	2.7	18	75	12	55	37	10	6	45	1.64
451207--454780	180	19.9	179	74	8	2276	41	9	8	39	1.69
452726--453046	177	1.8	175	79	5	369	41	10	8	39	1.70
453223--453297	38	2.0	38	86	0	105	40	10	17	32	1.84
453268--454780	181	8.5	179	74	9	882	41	9	8	40	1.68
454687--454878	96	2.0	97	89	3	298	32	13	11	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454795--455776	181	5.5	178	77	9	839	41	9	8	40	1.69
456850--457198	183	1.9	183	81	3	416	43	12	6	38	1.67
457062--457405	181	1.9	181	81	2	422	41	10	7	40	1.68
457261--457769	169	2.9	168	77	9	477	42	10	7	40	1.66
456893--458298	533	2.6	531	77	6	1214	42	11	7	39	1.69
458293--463103	180	26.6	180	72	11	2206	41	9	8	40	1.68
459599--459639	19	2.0	21	86	9	59	24	19	9	46	1.80
460334--462489	358	6.1	350	72	12	1195	41	10	8	40	1.69
460260--462264	708	2.8	695	78	8	1984	41	10	8	39	1.69
462939--463225	156	1.9	153	86	3	414	39	10	7	42	1.67
463097--463449	178	2.0	180	81	7	416	40	9	7	42	1.65
462581--463615	517	2.0	513	80	5	1138	39	10	8	41	1.70
463093--463946	182	4.7	179	73	11	522	40	11	7	40	1.69
464218--466464	182	12.5	181	74	8	1502	41	9	8	39	1.69
464212--466454	543	4.1	539	78	7	1729	41	9	8	39	1.69
464218--466428	903	2.4	903	84	4	2729	41	9	8	39	1.69
466359--466391	18	1.9	17	88	11	50	42	6	3	48	1.43
466393--466520	66	1.9	67	90	3	204	32	14	7	45	1.72
466550--469185	181	14.8	179	70	11	952	40	10	8	40	1.71
466550--467378	180	4.6	180	74	8	620	41	10	8	39	1.70
466545--467378	359	2.3	360	81	5	911	41	10	8	39	1.70
467368--467400	13	2.6	13	95	4	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467511--469052	356	4.3	361	73	9	892	40	10	9	39	1.72
468731--468763	18	1.9	17	88	11	50	39	6	6	48	1.53
467661--468862	529	2.3	529	79	5	1140	41	11	8	39	1.70
468495--468849	179	2.0	179	81	4	414	43	10	9	37	1.70
468546--468889	177	1.9	180	80	2	408	43	9	9	38	1.70
468960--468996	18	2.0	18	89	5	56	32	18	8	40	1.80
470099--470567	180	2.6	180	82	7	549	39	6	10	43	1.65
476478--476518	21	2.0	21	85	0	55	39	7	36	17	1.77
491103--491224	45	2.7	45	75	5	138	28	24	25	21	1.99
517516--517569	23	2.3	23	80	0	63	27	25	24	22	2.00
517538--517676	45	3.1	45	71	0	125	29	21	25	23	1.99
524983--525073	3	32.0	3	79	12	95	30	0	3	65	1.08
525091--525127	17	2.2	17	95	4	67	86	0	8	5	0.70
525873--525958	6	14.2	6	78	7	75	16	2	6	74	1.14
525891--525927	19	1.9	19	88	0	56	16	0	10	72	1.10
525879--525943	26	2.5	25	80	14	62	15	3	7	73	1.18
525929--525964	18	2.1	18	89	5	56	19	0	5	75	1.00
526444--526485	19	2.2	19	100	0	84	54	0	9	35	1.33
532096--532227	69	1.9	69	81	3	158	34	12	18	34	1.89
538367--538648	77	3.6	76	83	3	350	25	10	21	42	1.85
538329--538710	38	9.9	38	82	4	390	25	10	21	41	1.85
538329--538714	116	3.3	115	83	5	420	25	10	21	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539747--539821	18	4.2	18	76	19	59	14	4	6	74	1.17
539758--539799	13	3.3	13	86	6	59	14	2	9	73	1.18
539765--539799	6	5.7	6	90	6	52	14	2	11	71	1.25
540049--540087	13	2.9	13	80	3	51	43	2	2	51	1.29
549189--551399	180	12.3	177	74	9	1381	42	9	7	40	1.67
550118--550158	19	2.2	19	91	4	66	58	0	2	39	1.11
549274--551365	536	3.9	538	77	8	1293	42	9	7	40	1.68
549204--557717	717	11.8	710	73	12	2741	42	9	8	39	1.68
549208--566811	181	97.4	180	69	13	3618	41	10	8	39	1.68
549189--552844	360	10.0	356	72	12	1575	41	9	7	40	1.67
552871--566789	181	76.9	180	70	12	4795	41	10	8	39	1.69
552873--566810	361	38.5	355	69	13	2893	41	10	8	39	1.69
557868--557915	17	2.7	18	75	12	55	37	8	8	45	1.64
557425--558002	288	2.0	287	82	7	697	41	10	7	41	1.66
560891--561929	177	5.7	175	72	11	406	41	10	7	40	1.67
561494--562174	177	3.8	179	76	9	490	41	10	7	40	1.67
561779--561811	18	1.9	17	88	11	50	39	6	6	48	1.53
562129--562210	35	2.3	35	85	0	110	36	13	10	39	1.80
562710--562760	18	2.8	19	75	22	56	35	3	7	52	1.49
559464--566812	361	20.4	360	72	10	4314	41	10	8	40	1.69
563327--566841	536	6.5	535	75	8	2371	41	9	8	40	1.69
566692--566956	143	1.8	144	87	4	401	43	9	4	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566835--567566	357	2.0	355	80	7	802	40	9	8	41	1.68
567513--567615	53	1.9	53	86	0	143	33	10	9	46	1.71
567663--568175	178	2.9	178	79	3	474	41	9	8	40	1.68
570643--573770	715	4.4	709	75	9	1819	41	9	8	40	1.69
571377--572069	360	1.9	354	80	5	795	42	8	7	41	1.62
570585--573763	181	17.7	178	75	8	2056	41	9	8	40	1.68
570585--573637	538	5.7	537	76	8	2324	41	9	8	40	1.68
570649--573641	357	8.4	358	74	9	1671	41	9	8	40	1.68
573265--573308	18	2.4	18	85	7	54	59	2	4	34	1.30
573511--573564	17	3.0	19	73	13	51	38	7	7	46	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129