genome.fa.s13.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  50  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9909271--9909304	15	2.2	16	90	10	54	2	20	0	76	0.92
9910477--9910501	3	8.3	3	100	0	50	32	0	0	68	0.90
9914391--9914429	11	3.6	10	81	18	51	84	0	12	2	0.72
9914383--9914435	7	7.3	7	77	14	54	83	1	13	1	0.82
9915458--9915535	22	3.5	22	82	6	93	33	3	14	48	1.61
9915458--9915529	24	3.1	23	86	5	101	33	4	12	50	1.59
9915895--9915940	16	2.8	17	83	6	58	39	17	13	30	1.87
9915937--9915970	16	2.1	16	88	0	50	26	8	14	50	1.72
9915985--9916136	52	2.9	52	80	3	173	34	15	11	38	1.83
9916088--9916158	34	2.1	34	84	5	90	39	14	8	38	1.76
9916088--9916141	17	3.2	17	72	0	54	38	14	9	37	1.79
9916142--9916207	18	3.7	18	74	9	64	34	16	10	37	1.83
9916147--9916228	36	2.3	36	83	6	96	35	13	13	37	1.84
9916159--9916239	18	4.6	18	72	3	67	30	14	14	39	1.87
9916247--9916300	17	3.1	17	81	7	56	31	12	16	38	1.87
9916249--9916394	18	8.2	18	68	9	61	29	15	17	38	1.90
9916885--9916974	6	14.7	6	78	2	63	27	2	12	57	1.46
9916884--9916974	36	2.4	38	82	7	107	27	2	13	57	1.48
9920504--9920556	27	2.0	27	92	0	88	26	22	5	45	1.74
9923862--9923893	15	2.1	15	94	0	55	71	6	15	6	1.26
9924249--9924463	50	4.3	49	78	3	223	32	7	17	42	1.77
9928857--9928921	34	1.9	34	93	0	112	36	16	13	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9934796--9934844	18	2.8	17	78	9	53	71	8	2	18	1.21
9935002--9935036	12	2.9	12	86	0	52	51	25	8	14	1.70
9947251--9947294	22	2.1	20	83	8	52	6	9	4	79	1.04
9950892--9950935	7	6.1	7	81	5	52	18	0	4	77	0.94
9951077--9951189	46	2.5	46	83	2	138	44	17	11	26	1.83
9951268--9951484	42	5.2	43	71	20	131	38	12	16	33	1.86
9951770--9951829	18	3.4	17	77	13	59	38	8	15	38	1.77
9952020--9952109	37	2.4	37	83	3	101	47	10	13	28	1.75
9952092--9952123	17	1.9	17	93	6	57	56	12	0	31	1.37
9953891--9953939	9	5.2	9	80	9	53	6	10	4	79	1.03
9953920--9953954	16	2.2	16	89	0	52	0	8	11	80	0.92
9953891--9953991	19	5.4	18	71	23	57	4	14	4	75	1.15
9954451--9954505	9	6.3	9	79	12	53	3	14	0	81	0.82
9954451--9954505	8	6.5	8	85	6	56	3	14	0	81	0.82
9955150--9955188	17	2.4	16	82	4	51	0	20	0	79	0.73
9955167--9955205	19	2.0	19	90	5	60	0	23	0	76	0.78
9963058--9963099	8	5.4	8	82	5	59	52	14	2	30	1.54
9969517--9969593	30	2.7	29	80	13	79	35	2	5	57	1.35
9974084--9974126	20	2.1	20	87	12	61	32	18	0	48	1.48
9977018--9977066	24	2.0	25	88	8	73	4	24	0	71	1.03
9978292--9978332	9	4.4	9	84	6	55	7	9	0	82	0.83
9978292--9978332	19	2.2	19	91	4	66	7	9	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9986964--9987009	3	15.3	3	90	0	65	6	0	26	67	1.15
9986993--9987139	39	3.6	39	80	9	143	18	2	25	53	1.57
9986984--9987093	48	2.3	48	95	0	193	12	2	29	55	1.51
9987032--9987057	3	8.7	3	100	0	52	0	0	30	69	0.89
9987134--9987171	3	13.0	3	94	5	69	31	0	0	68	0.90
9990259--9990302	23	1.9	23	85	0	61	34	9	11	45	1.72
9990449--9990498	24	2.0	26	88	7	77	20	16	10	54	1.70
9995942--9995976	13	2.6	13	95	4	61	25	0	0	74	0.82
10000040--10000108	2	34.0	2	82	8	59	47	11	0	40	1.40
10001666--10001728	26	2.4	26	76	10	65	22	3	9	65	1.37
10001891--10001939	25	1.9	26	91	4	82	46	2	10	40	1.49
10005766--10005863	33	2.9	33	83	4	124	36	31	5	26	1.78
10005737--10005863	18	7.1	18	74	13	109	33	33	4	27	1.78
10017906--10017973	6	11.3	6	77	12	68	17	1	1	79	0.88
10017906--10017973	17	3.8	17	75	19	66	17	1	1	79	0.88
10018088--10018128	11	3.6	12	80	9	50	21	0	7	70	1.11
10018148--10018189	13	3.0	14	86	10	59	21	0	4	73	1.01
10018155--10018193	13	3.1	13	92	3	62	20	0	2	76	0.90
10019088--10019163	10	7.4	9	80	16	71	14	3	1	80	0.92
10019067--10019161	25	3.7	25	72	18	70	15	5	1	77	0.99
10019081--10019153	27	2.7	27	83	8	78	13	5	1	79	0.97
10019088--10019162	33	2.4	29	83	16	89	13	4	1	81	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10019181--10019492	58	5.3	58	83	6	364	43	7	13	35	1.71
10019357--10019446	27	3.2	27	64	22	67	37	6	17	37	1.76
10019173--10019492	118	2.7	116	83	5	421	45	6	12	35	1.69
10030648--10030862	42	5.1	41	86	1	223	25	14	20	39	1.91
10030650--10030862	84	2.5	84	84	2	268	25	15	20	39	1.91
10031045--10031170	11	11.4	11	70	10	78	15	3	1	79	0.94
10031061--10031172	6	18.8	6	77	9	106	18	1	1	77	0.94
10031274--10031316	21	2.0	22	90	4	70	23	9	4	62	1.44
10031595--10031651	25	2.3	24	81	3	78	29	1	14	54	1.50
10031703--10031741	19	2.1	19	85	0	51	20	20	20	38	1.94
10032186--10032225	4	9.8	4	86	5	53	22	0	2	75	0.93
10032255--10032327	27	2.6	28	77	12	80	13	5	2	78	1.04
10032343--10032965	58	10.7	57	80	7	601	44	6	12	35	1.68
10032344--10032967	117	5.4	117	86	4	825	44	6	12	36	1.69
10032344--10032967	233	2.7	232	86	3	896	44	6	12	36	1.69
10032854--10032880	14	1.9	14	100	0	54	59	3	0	37	1.15
10033872--10033914	23	1.9	22	90	4	68	76	4	9	9	1.14
10034931--10034987	14	4.1	14	71	8	53	35	0	3	61	1.13
10040720--10040759	14	2.9	14	92	0	62	77	2	5	15	1.04
10042458--10042491	17	2.1	17	89	10	54	47	0	0	52	1.00
10043120--10043153	13	2.5	13	90	4	50	52	0	2	44	1.16
10043567--10043605	18	2.2	18	86	9	53	79	0	5	15	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10043956--10043993	20	1.9	19	89	5	58	52	2	0	44	1.14
10044596--10044650	19	2.9	19	76	12	51	78	3	3	14	1.03
10044587--10044636	24	2.1	23	82	14	57	76	4	6	14	1.13
10044603--10044651	17	2.7	19	81	15	59	75	4	4	16	1.11
10044940--10044975	19	1.9	18	88	5	54	50	0	0	50	1.00
10062939--10062996	3	19.7	3	96	3	109	67	0	0	32	0.91
10079964--10079990	2	13.5	2	100	0	54	51	0	0	48	1.00
10079300--10080998	343	4.9	343	90	6	2733	36	15	17	31	1.91
10080307--10080359	2	26.5	2	100	0	106	50	0	0	49	1.00
10079964--10080682	353	2.0	358	93	4	1223	36	14	15	32	1.88
10079625--10080998	694	2.0	703	94	2	2424	36	15	16	31	1.90
10084062--10084087	4	6.5	4	100	0	52	26	0	23	50	1.50
10085357--10085397	18	2.3	18	84	12	50	41	0	2	56	1.13
10085348--10085390	21	1.9	24	86	13	65	41	0	2	55	1.12
10085578--10085606	15	1.9	15	100	0	58	62	0	0	37	0.96
10086259--10086307	22	2.3	21	82	3	62	24	0	30	44	1.54
10086281--10086310	14	2.2	14	94	5	53	20	0	26	53	1.46
10087713--10087975	144	1.8	141	86	4	375	42	15	11	30	1.83
10088393--10088442	10	4.9	10	73	22	50	28	10	18	44	1.81
10089236--10089276	2	20.5	2	85	9	57	43	0	4	51	1.23
10095831--10095874	17	2.4	18	85	7	63	18	2	4	75	1.09
10097201--10097298	46	2.2	46	88	1	144	29	9	16	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10097806--10097867	23	2.7	23	89	0	97	30	8	14	46	1.73
10097777--10097901	59	2.1	59	83	2	153	36	6	12	44	1.68
10097846--10097933	36	2.4	36	86	0	113	36	6	10	46	1.64
10097880--10097972	36	2.6	36	87	0	123	35	7	10	46	1.67
10098040--10098075	18	2.0	18	94	0	63	25	22	22	30	1.99
10098140--10098182	18	2.4	18	80	0	50	37	20	9	32	1.85
10098170--10098205	18	2.0	18	94	0	63	36	16	2	44	1.63
10098210--10098259	22	2.4	21	86	6	66	26	24	12	38	1.90
10098431--10098522	48	1.9	48	95	0	166	29	11	19	39	1.88
10098530--10098892	38	9.7	35	73	14	196	28	12	19	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129