genome.fa.s13.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  114  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20432011--20432067	27	2.2	25	84	6	69	33	22	26	17	1.96
20444759--20444801	3	14.7	3	82	4	52	62	0	4	32	1.15
20444839--20444887	25	2.0	25	91	0	80	28	24	28	18	1.98
20445734--20445782	9	5.4	9	80	0	53	36	12	8	42	1.72
20445691--20445757	33	2.0	34	94	2	118	35	16	11	35	1.86
20445738--20445782	18	2.5	18	81	0	63	35	11	8	44	1.71
20445739--20445796	27	2.1	27	80	0	62	34	8	5	51	1.55
20446234--20446329	29	3.3	29	76	1	93	29	9	8	53	1.62
20451441--20451472	2	16.0	2	100	0	64	50	0	0	50	1.00
20453586--20453634	21	2.4	20	79	3	53	63	8	0	28	1.23
20453638--20453662	7	3.6	7	100	0	50	48	0	0	52	1.00
20454373--20454403	12	2.6	12	89	0	53	67	0	0	32	0.91
20454643--20454684	22	1.9	22	90	0	66	47	7	0	45	1.30
20462715--20462752	18	2.1	19	85	5	51	78	0	2	18	0.86
20463939--20464045	32	3.6	30	78	16	91	67	4	5	22	1.31
20463980--20464047	26	2.5	26	86	11	93	69	7	2	20	1.26
20464529--20464587	24	2.4	24	86	8	84	74	5	3	16	1.13
20466239--20466271	17	2.0	17	94	5	59	75	0	0	24	0.80
20466323--20466360	19	2.0	20	89	5	60	47	0	0	52	1.00
20466338--20466377	17	2.4	18	80	16	50	42	0	0	57	0.98
20466395--20466427	17	2.0	17	88	5	50	66	0	6	27	1.15
20468050--20468100	11	4.4	11	77	20	50	39	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20468055--20468095	11	3.5	12	87	12	59	31	0	2	65	1.05
20470110--20470248	30	4.6	30	76	9	124	51	2	5	40	1.38
20475179--20475236	9	6.1	9	73	11	53	24	34	8	32	1.86
20475186--20475236	15	3.4	15	76	10	59	23	35	7	33	1.84
20480107--20480448	181	1.9	180	89	1	533	28	17	27	27	1.97
20486690--20486724	16	2.2	16	90	10	54	8	0	22	68	1.16
20489469--20489532	21	3.0	21	95	0	110	9	18	18	53	1.71
20489825--20489872	14	3.6	14	78	18	50	58	0	2	39	1.10
20489813--20489881	18	4.0	17	80	12	70	59	0	1	39	1.06
20489824--20489884	21	2.9	21	80	17	72	57	0	1	40	1.08
20489824--20489888	11	6.1	11	73	5	53	56	0	1	41	1.08
20493623--20493652	15	2.0	15	93	0	51	20	23	16	40	1.91
20501317--20501345	1	29.0	1	100	0	58	0	0	0	100	0.00
20512933--20513003	23	3.0	23	82	10	79	49	1	0	49	1.09
20512939--20512978	20	2.0	21	90	5	64	47	0	0	52	1.00
20513018--20513057	15	2.9	13	82	13	53	35	0	0	65	0.93
20513024--20513052	15	1.9	15	100	0	58	34	0	0	65	0.93
20513871--20514023	80	1.9	80	87	1	227	37	5	11	46	1.62
20514028--20514117	45	2.0	45	97	0	171	32	11	14	42	1.81
20514936--20515001	35	1.9	33	81	6	78	43	1	1	53	1.19
20514969--20515032	26	2.5	26	92	5	105	48	0	3	48	1.17
20528021--20528059	12	3.2	12	78	7	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20529784--20529811	2	14.0	2	100	0	56	50	0	0	50	1.00
20530773--20530836	32	2.0	32	84	0	83	18	3	31	46	1.65
20530785--20530836	16	3.2	16	80	0	59	17	1	32	48	1.58
20531936--20531984	20	2.5	20	79	0	53	2	8	12	77	1.07
20531923--20531985	32	1.9	32	93	6	108	1	6	11	80	0.95
20532276--20532343	23	3.0	23	77	12	70	11	4	7	76	1.13
20532302--20532354	23	2.3	23	84	12	65	11	1	11	75	1.13
20532616--20535142	73	35.5	71	83	6	2512	41	14	24	20	1.89
20532657--20535145	35	69.9	37	66	15	787	41	13	24	20	1.88
20532600--20535142	143	17.8	142	83	6	2492	41	14	24	20	1.89
20535216--20535285	36	1.9	36	83	11	90	41	15	17	25	1.89
20535132--20535299	87	1.9	87	89	2	257	37	15	19	27	1.92
20535288--20535343	22	2.5	22	97	0	103	32	19	25	23	1.98
20535423--20535479	23	2.5	22	80	5	69	31	19	22	26	1.98
20535190--20535610	132	3.2	131	84	5	548	37	18	19	25	1.94
20535577--20535627	22	2.4	21	84	15	61	33	17	19	29	1.95
20537655--20537699	18	2.4	18	92	3	72	2	2	4	91	0.57
20537648--20537699	1	52.0	1	80	0	59	3	1	3	90	0.60
20541661--20541725	32	2.0	32	84	0	85	18	3	32	46	1.65
20541674--20541725	16	3.2	16	80	0	59	17	1	32	48	1.58
20543199--20543253	24	2.2	26	87	12	80	10	0	9	80	0.92
20543217--20543284	26	2.9	22	81	14	73	16	1	7	75	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20544333--20544387	26	2.1	26	86	0	74	52	0	1	45	1.11
20558018--20558055	13	2.9	13	92	0	58	23	0	2	73	0.95
20558016--20558055	18	2.2	18	90	0	62	22	0	2	75	0.93
20561127--20561238	31	3.6	31	82	2	136	40	0	2	56	1.20
20561092--20561238	61	2.5	59	82	4	179	39	0	3	56	1.21
20561260--20561332	30	2.5	29	82	6	94	54	1	2	41	1.23
20561992--20562018	2	13.5	2	100	0	54	0	48	0	51	1.00
20562018--20562063	2	23.0	2	100	0	92	50	0	0	50	1.00
20569963--20569990	14	2.0	14	100	0	56	50	0	7	42	1.30
20570531--20570610	42	2.0	38	85	11	106	38	5	1	55	1.30
20570589--20570721	34	3.9	34	80	7	128	51	6	3	39	1.45
20570627--20570735	16	6.6	15	71	17	74	51	3	2	42	1.34
20570708--20570843	34	4.1	35	77	13	101	41	1	5	51	1.35
20570725--20570801	15	4.7	15	75	22	66	35	2	6	55	1.39
20570662--20570754	50	1.9	48	82	10	118	49	3	3	44	1.34
20570725--20570816	34	2.7	34	83	9	118	34	2	7	55	1.40
20572107--20572178	3	24.0	3	100	0	144	66	0	0	33	0.92
20573965--20573999	17	2.0	18	88	5	54	42	0	0	57	0.99
20574012--20574063	20	2.5	20	75	9	52	44	1	3	50	1.31
20574514--20574550	2	18.5	2	94	0	65	54	0	0	45	1.00
20575463--20575506	2	22.0	2	100	0	88	0	50	0	50	1.00
20575654--20575683	15	1.9	16	93	6	53	3	6	6	83	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20583282--20583307	7	3.7	7	100	0	52	11	0	0	88	0.52
20593273--20593354	25	3.1	27	82	8	89	43	30	1	24	1.62
20596496--20596597	32	3.4	31	68	13	86	49	4	10	35	1.59
20596419--20596649	59	3.9	59	86	3	322	49	5	10	34	1.61
20608528--20608588	21	3.0	21	90	2	88	36	11	14	37	1.83
20608952--20609341	41	9.4	41	82	5	412	24	13	19	41	1.88
20610241--20610288	10	4.7	10	74	5	51	10	0	12	77	1.00
20610382--20610545	82	2.0	82	83	4	217	47	6	9	37	1.60
20610474--20610698	59	3.8	59	84	4	290	49	5	9	35	1.59
20612631--20612661	2	15.5	2	93	0	53	48	0	51	0	1.00
20612705--20612734	14	2.1	14	100	0	60	20	0	43	36	1.52
20614745--20614797	16	3.3	16	69	10	54	30	1	15	52	1.53
20617394--20617462	28	2.5	27	82	15	79	43	17	5	33	1.73
20617495--20617533	16	2.4	16	91	0	60	41	23	2	33	1.68
20620069--20620149	27	2.9	28	85	3	110	34	20	9	34	1.86
20621999--20622037	16	2.4	16	91	0	60	41	23	2	33	1.68
20625784--20625829	19	2.4	19	100	0	92	28	15	0	56	1.39
20628684--20628740	4	14.2	4	88	0	60	54	5	0	40	1.23
20628684--20628740	12	4.8	12	84	0	69	54	5	0	40	1.23
20629737--20629805	35	1.9	37	82	11	90	39	0	1	59	1.06
20639831--20639905	38	2.0	38	94	0	132	40	24	8	28	1.83
20643488--20643561	38	1.9	39	83	2	96	54	1	4	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20643576--20643642	34	2.0	32	82	8	80	49	0	0	50	1.00
20644175--20644309	30	4.6	30	69	17	77	52	4	3	39	1.39
20646276--20646331	28	2.1	26	86	6	76	35	0	1	62	1.06
20651343--20651411	33	2.1	32	84	7	86	49	2	0	47	1.16
20652674--20652727	26	2.1	26	96	0	99	27	11	16	44	1.82
20656447--20656541	31	3.1	31	89	0	118	40	9	6	44	1.62
20656463--20656543	31	2.6	31	92	0	126	43	8	6	41	1.60
20657248--20657370	7	19.0	7	65	18	61	44	35	0	18	1.56
20657249--20657356	19	5.6	19	72	16	89	45	34	0	19	1.57
20657289--20657363	12	6.0	12	77	11	71	48	33	1	17	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129