genome.fa.s13.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  42  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8511463--8511508	23	2.0	24	87	12	69	76	4	2	17	1.06
8512536--8512704	66	2.6	66	80	4	191	46	14	18	20	1.83
8512538--8512785	64	3.8	64	78	7	225	43	13	22	20	1.86
8514410--8514442	10	3.3	10	91	0	57	0	12	0	87	0.53
8514410--8514452	20	2.2	20	83	8	52	4	13	0	81	0.84
8517265--8517289	2	12.5	2	100	0	50	52	0	0	48	1.00
8518280--8518343	23	2.7	23	79	18	78	73	3	6	17	1.17
8519501--8519731	121	1.9	121	95	1	419	46	11	16	25	1.81
8520065--8520113	15	3.3	15	91	0	71	26	0	16	57	1.40
8520072--8520119	15	3.2	15	90	0	69	22	0	22	54	1.45
8520072--8520115	7	6.0	7	87	10	52	22	0	22	54	1.45
8520139--8520220	28	2.8	30	70	9	71	12	0	31	56	1.36
8520118--8520255	29	4.8	28	71	7	82	18	1	28	52	1.54
8520160--8520223	14	4.5	14	73	7	58	12	0	35	51	1.40
8520447--8520497	3	17.0	3	95	0	93	35	0	0	64	0.94
8520617--8520656	15	2.5	16	88	8	55	20	2	0	77	0.88
8520729--8520777	8	6.1	8	83	6	64	75	0	0	24	0.80
8520717--8520777	21	2.7	23	80	12	74	75	1	0	22	0.89
8530561--8530599	13	2.9	13	84	3	51	69	5	0	25	1.09
8537455--8537495	12	3.4	13	80	12	52	56	0	0	43	0.99
8537594--8537654	4	15.5	4	93	3	61	36	14	0	49	1.44
8537620--8537664	2	22.5	2	90	0	72	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8538338--8538418	40	2.0	40	92	0	135	41	14	12	30	1.83
8541954--8542002	2	25.0	2	91	4	82	51	0	46	2	1.12
8542338--8542511	60	2.9	60	82	1	217	51	3	9	36	1.51
8542336--8542511	58	3.0	55	79	13	181	50	3	9	36	1.51
8542447--8542602	76	2.1	77	84	10	214	47	3	10	38	1.55
8542387--8542662	135	2.0	135	84	5	353	48	3	11	36	1.58
8542542--8542726	59	3.2	56	77	12	185	49	4	10	35	1.58
8546684--8546728	13	3.4	13	78	6	54	80	0	17	2	0.82
8546678--8546726	20	2.6	18	78	12	53	79	0	16	4	0.88
8547938--8548098	34	4.7	34	79	3	144	34	16	8	40	1.79
8547982--8548121	17	8.2	17	72	3	86	34	15	10	40	1.80
8547936--8548098	68	2.4	68	79	2	184	34	15	8	41	1.78
8547982--8548140	34	4.7	34	82	4	160	32	15	10	41	1.81
8547936--8548140	68	3.0	68	79	2	180	33	15	10	41	1.80
8548302--8548697	86	4.7	86	78	7	387	23	16	15	44	1.85
8548302--8548697	85	4.6	85	78	7	306	23	16	15	44	1.85
8549772--8549884	60	1.9	60	89	3	176	44	4	13	38	1.64
8549832--8549972	74	1.9	75	86	4	205	48	5	9	36	1.60
8549895--8550119	62	3.8	59	83	9	280	45	7	10	36	1.67
8549765--8550014	136	1.9	134	83	5	324	48	5	11	34	1.63
8549894--8550119	57	3.8	58	83	9	278	46	7	10	35	1.67
8549894--8550117	119	1.9	121	86	6	325	46	7	10	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8553130--8553195	31	2.2	31	94	2	116	39	10	18	31	1.85
8553615--8553645	15	2.1	15	100	0	62	51	0	0	48	1.00
8556439--8556476	15	2.5	15	84	16	51	21	0	2	76	0.91
8556816--8556852	16	2.3	16	90	0	56	27	2	2	67	1.17
8558672--8559012	146	2.4	145	80	3	384	41	11	14	31	1.82
8559523--8559557	16	2.2	16	90	10	54	2	5	14	77	1.07
8559611--8560067	36	12.6	36	69	12	157	52	14	15	16	1.74
8559684--8559950	72	3.7	71	72	5	214	53	14	14	16	1.73
8559689--8559950	145	1.8	144	82	5	341	53	14	14	16	1.73
8560027--8560129	36	2.9	36	70	2	82	52	13	17	16	1.75
8560582--8560635	28	2.0	27	88	3	81	35	11	29	24	1.90
8560493--8560667	93	1.9	94	82	5	221	37	12	21	29	1.90
8560627--8560736	33	3.3	33	80	7	116	40	12	16	30	1.86
8560614--8560745	66	2.0	65	84	7	169	40	12	16	30	1.86
8560758--8560822	33	2.0	33	81	6	78	32	15	20	32	1.93
8560842--8560941	28	3.6	27	76	12	87	38	7	22	33	1.81
8561040--8561134	33	2.9	33	77	3	93	30	15	18	34	1.93
8561312--8561394	22	3.8	22	80	6	89	25	19	20	34	1.96
8562410--8562448	15	2.5	15	83	4	51	0	20	0	79	0.73
8562410--8562470	31	1.9	32	83	9	81	4	18	0	77	0.95
8562404--8562485	24	3.5	24	77	12	64	9	17	1	71	1.18
8563628--8563677	20	2.4	21	80	9	59	6	16	2	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8564642--8564860	3	75.3	3	70	17	115	31	3	5	59	1.36
8564716--8564860	8	16.8	8	74	17	71	31	4	2	62	1.28
8565665--8565728	6	10.0	6	76	18	58	18	0	3	78	0.89
8565665--8565726	31	2.0	32	87	9	92	17	0	3	79	0.87
8565667--8565728	17	3.9	17	77	12	60	19	0	3	77	0.90
8568304--8568352	21	2.3	21	96	0	89	32	14	10	42	1.79
8574481--8574645	58	2.8	57	79	9	158	54	6	11	27	1.61
8574481--8574606	57	2.2	56	82	10	150	59	4	10	25	1.49
8578789--8578865	20	4.1	19	79	11	79	76	0	12	10	1.02
8578789--8578853	9	7.0	9	81	11	78	76	0	10	12	1.01
8578789--8578865	38	2.1	37	90	2	118	76	0	12	10	1.02
8580149--8580208	21	2.9	21	82	0	75	40	6	11	41	1.68
8580821--8581031	44	4.8	45	84	5	218	25	16	14	44	1.84
8580955--8581098	75	1.9	75	87	2	209	25	12	11	50	1.74
8580999--8581062	31	2.1	31	87	0	92	21	17	9	51	1.73
8587650--8588092	111	4.0	112	72	4	308	24	21	15	39	1.92
8588398--8588607	3	73.0	3	70	18	63	30	3	6	59	1.41
8588396--8588450	22	2.3	23	81	12	67	30	1	7	60	1.35
8588423--8588489	10	6.6	10	75	6	55	35	4	8	50	1.54
8588583--8588607	8	3.1	8	100	0	50	24	0	0	76	0.80
8589096--8589145	21	2.4	21	80	9	59	26	2	14	58	1.47
8589451--8589507	5	11.2	5	78	16	55	24	0	3	71	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8589451--8589507	25	2.2	25	84	9	71	24	0	3	71	1.01
8589431--8589519	20	4.3	20	77	14	67	24	2	2	70	1.10
8593705--8593737	17	2.0	16	94	5	57	42	6	24	27	1.78
8596071--8596109	19	2.1	19	95	0	69	25	2	0	71	0.98
8596080--8596121	16	2.7	15	85	3	57	26	2	0	71	0.98
8596082--8596122	12	3.9	11	81	18	52	26	2	0	70	0.99
8597503--8597563	26	2.3	26	94	0	104	9	18	29	42	1.82
8598354--8598407	21	2.6	21	86	13	69	79	1	11	7	1.00
8598354--8598407	20	2.5	22	83	13	69	79	1	11	7	1.00
8598555--8598883	48	6.8	47	82	7	322	40	17	11	29	1.86
8598555--8598883	98	3.4	96	80	6	385	40	17	11	29	1.86
8598955--8599224	99	2.7	100	80	4	255	39	19	14	26	1.90
8599186--8599280	42	2.3	43	82	12	117	43	21	5	30	1.74
8599216--8599360	42	3.5	42	77	11	147	42	22	8	26	1.83
8599220--8599336	38	3.0	38	78	12	128	42	23	10	23	1.84
8599387--8599806	134	3.1	135	86	3	540	43	14	13	28	1.84
8600007--8600104	35	2.8	35	82	0	124	38	12	14	34	1.83
8605937--8605974	11	3.4	11	82	17	51	26	0	2	71	1.00
8605938--8605974	12	3.2	12	85	14	51	24	0	2	72	0.97
8607321--8607383	1	63.0	1	75	0	54	87	3	7	1	0.71
8607321--8607383	9	6.6	9	84	10	81	87	3	7	1	0.71
8607321--8607383	10	6.4	10	82	14	78	87	3	7	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8607321--8607383	19	3.3	19	85	14	85	87	3	7	1	0.71
8608224--8608263	20	2.0	20	90	4	64	10	7	10	72	1.28
8609072--8609447	143	2.6	143	83	2	466	42	12	13	31	1.81
8611265--8611321	28	2.0	29	83	13	73	49	0	1	49	1.11
8614082--8614112	2	15.5	2	100	0	62	48	0	0	51	1.00
8622258--8623254	234	4.3	234	81	6	1097	33	8	11	46	1.71
8623660--8623698	19	2.1	19	85	9	53	51	0	2	46	1.14
8627510--8627539	15	1.9	16	93	6	53	53	20	0	26	1.46
8627571--8627616	6	8.0	6	83	9	60	50	15	2	32	1.56
8627565--8627623	16	3.6	16	84	8	73	50	11	3	33	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129