genome.fa.s13.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  105  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18978687--18978711	12	2.1	12	100	0	50	28	24	0	48	1.52
18980682--18980747	16	4.1	16	71	23	57	42	0	1	56	1.08
18980667--18980748	33	2.6	32	83	11	91	39	0	2	58	1.11
18980682--18980749	32	2.2	33	82	15	90	42	0	1	55	1.08
18983014--18983082	24	2.9	24	78	10	79	50	1	1	46	1.19
18983038--18983182	18	7.7	18	69	16	80	47	0	0	51	1.05
18983014--18983193	23	8.4	23	68	23	74	47	1	0	51	1.12
18983014--18983119	24	4.4	24	71	21	78	52	0	0	45	1.13
18983073--18983116	20	2.0	22	79	16	56	59	0	0	40	0.98
18983064--18983119	16	3.3	16	80	9	58	55	1	0	42	1.10
18983078--18983199	22	5.5	23	75	17	73	45	0	0	54	1.05
18983089--18983199	17	7.3	15	76	20	90	43	0	0	55	1.05
18984332--18984369	15	2.5	15	87	8	51	13	10	0	76	1.02
18984461--18984516	19	3.0	19	71	21	55	44	0	0	55	0.99
18985369--18985418	24	2.0	26	81	14	61	40	0	0	60	0.97
18985463--18985529	34	2.0	34	87	0	98	62	4	0	32	1.15
18986501--18986536	18	1.9	19	88	5	56	75	5	16	2	1.12
18986820--18986864	22	2.1	21	83	4	54	80	0	6	13	0.91
18986957--18987013	25	2.3	25	78	6	62	66	1	1	29	1.12
18988171--18988202	2	16.0	2	93	0	55	3	46	0	50	1.17
18992551--18992603	23	2.3	22	83	6	61	50	3	0	45	1.19
18999397--18999893	253	2.0	253	97	0	931	35	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19002562--19002595	16	2.2	16	89	5	52	35	0	2	61	1.11
19002666--19002703	18	2.1	19	90	5	60	36	0	0	63	0.95
19017948--19017977	15	2.0	15	93	0	51	16	10	33	40	1.82
19018118--19018156	18	2.2	18	90	0	60	23	5	25	46	1.73
19018517--19018575	21	2.8	21	94	0	100	30	23	28	16	1.97
19022052--19022095	3	14.7	3	100	0	88	31	0	0	68	0.90
19022140--19022188	18	2.8	18	81	9	57	26	6	0	67	1.14
19022146--19022198	27	2.0	26	82	10	63	32	5	0	62	1.19
19024429--19024735	168	1.8	168	94	0	542	39	10	18	31	1.85
19029416--19029441	7	3.7	7	100	0	52	76	23	0	0	0.78
19032913--19032953	21	1.9	21	85	5	55	78	2	4	14	1.03
19033922--19033974	26	2.0	26	89	7	81	58	11	3	26	1.49
19034494--19034552	5	12.2	5	81	12	54	81	0	18	0	0.69
19034502--19034548	9	4.9	9	82	14	58	78	0	21	0	0.75
19034501--19034554	17	3.1	17	87	10	81	77	0	22	0	0.76
19034502--19034548	19	2.4	20	92	3	78	78	0	21	0	0.75
19034494--19034549	8	5.9	10	80	19	59	82	0	17	0	0.68
19035760--19035889	41	3.2	41	82	4	165	43	8	13	34	1.75
19035923--19036138	41	5.3	41	66	12	113	44	9	11	34	1.73
19035835--19036168	127	2.7	124	82	8	421	45	8	10	36	1.68
19037481--19037530	26	1.9	26	83	0	64	18	12	12	58	1.64
19037960--19038005	14	3.4	14	78	3	58	43	10	13	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19038144--19038223	15	5.0	15	70	16	54	51	0	1	47	1.08
19038152--19038241	19	5.2	18	75	16	66	51	0	1	47	1.08
19038196--19038258	15	3.9	15	74	13	54	55	1	1	41	1.19
19038267--19038360	15	5.8	15	74	13	80	38	1	3	57	1.22
19038253--19038293	19	2.1	19	86	4	55	34	4	0	60	1.18
19038332--19038372	18	2.4	16	88	8	55	43	0	4	51	1.23
19038334--19038372	16	2.3	18	86	8	55	43	0	5	51	1.24
19038917--19038947	16	1.9	16	100	0	62	51	6	12	29	1.65
19038810--19039046	118	2.0	118	80	8	271	48	7	14	29	1.71
19039144--19039642	106	4.7	105	73	10	409	47	11	12	29	1.75
19038977--19039642	324	2.1	316	85	5	885	45	10	12	30	1.76
19046370--19046629	87	3.0	86	85	2	351	43	10	26	19	1.83
19048722--19048756	2	18.0	2	94	5	63	48	0	0	51	1.00
19049701--19049741	9	4.6	9	84	0	55	53	0	0	46	1.00
19057157--19057197	21	2.0	21	90	4	66	46	14	14	24	1.82
19057772--19057825	27	2.0	27	96	0	99	42	11	9	37	1.73
19058435--19058488	19	2.8	18	81	10	54	68	3	1	25	1.16
19062553--19062794	86	2.8	85	89	3	369	25	10	19	44	1.82
19065822--19065865	22	2.0	23	86	4	63	77	2	11	9	1.08
19066318--19066348	13	2.3	14	94	5	55	83	0	6	9	0.79
19067077--19067117	17	2.4	17	83	0	55	82	0	9	7	0.83
19067553--19067592	18	2.2	19	90	4	64	72	0	2	25	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19067570--19067627	25	2.3	25	87	3	80	79	5	3	12	1.02
19067559--19067617	18	3.4	18	80	13	61	76	3	3	16	1.06
19069626--19069663	18	2.2	17	86	13	51	28	2	0	68	1.03
19070255--19070320	12	5.3	12	76	7	60	45	18	9	27	1.79
19070841--19070878	13	2.9	13	84	7	51	65	0	0	34	0.93
19073081--19073114	9	3.6	9	85	14	50	64	0	0	35	0.94
19073374--19074169	253	3.1	246	82	7	895	52	5	7	34	1.53
19074009--19074063	22	2.4	22	80	19	60	58	3	5	32	1.38
19074072--19074129	18	3.2	17	76	19	55	65	3	6	24	1.33
19074201--19074234	9	3.6	9	85	14	50	35	0	0	64	0.94
19074853--19074934	34	2.4	36	80	10	91	29	4	6	59	1.42
19075545--19075690	52	2.9	49	76	11	134	35	17	9	37	1.82
19076624--19076689	26	2.6	25	77	15	71	50	1	1	46	1.20
19076681--19076730	17	2.7	20	73	23	54	48	0	2	50	1.12
19076846--19076880	15	2.2	16	90	10	54	48	2	0	48	1.16
19076793--19076881	44	2.0	43	82	6	108	46	3	2	48	1.31
19077053--19077085	3	11.0	3	100	0	66	66	0	0	33	0.92
19077326--19077372	22	2.1	22	88	0	67	55	4	4	36	1.39
19079306--19079351	20	2.3	20	85	10	67	71	0	6	21	1.08
19079308--19079351	24	1.9	23	86	9	63	70	0	6	22	1.11
19080214--19080246	17	1.9	17	93	0	57	15	21	6	57	1.59
19080390--19080425	19	1.9	19	88	5	56	13	11	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19080473--19080500	6	4.7	6	100	0	56	67	0	0	32	0.91
19080785--19080870	18	4.7	18	75	7	66	41	12	15	30	1.84
19081025--19081071	17	2.8	17	90	0	67	40	8	12	38	1.74
19081160--19081210	17	3.0	17	88	0	66	37	17	11	33	1.86
19081332--19081412	42	1.9	42	89	0	126	45	12	9	32	1.75
19081433--19081737	46	6.6	46	72	9	176	39	17	6	36	1.76
19087768--19087828	22	2.9	22	76	18	67	72	3	3	21	1.14
19089052--19089101	24	2.1	24	81	7	57	70	10	8	12	1.35
19093223--19093631	41	9.8	41	81	8	423	50	13	5	30	1.64
19093301--19093447	21	6.9	23	67	17	77	53	11	5	29	1.59
19093523--19093584	20	3.0	20	73	13	63	50	9	4	35	1.57
19093531--19093599	22	3.3	22	72	12	72	52	8	2	36	1.47
19093356--19093681	170	1.9	173	82	9	418	52	12	4	30	1.59
19093716--19093779	20	3.2	20	81	0	74	51	10	7	29	1.65
19094336--19094366	3	10.7	3	93	6	55	29	0	0	70	0.87
19094437--19094476	16	2.4	17	87	4	55	72	5	0	22	1.04
19094734--19094915	43	4.3	43	73	10	149	36	19	14	28	1.92
19094710--19094841	43	3.1	42	71	5	113	31	16	16	34	1.92
19094762--19094927	42	3.9	42	73	7	120	37	19	15	27	1.92
19095182--19095206	13	1.9	13	100	0	50	40	12	24	24	1.88
19099222--19099246	13	1.9	13	100	0	50	48	16	8	28	1.74
19099215--19099274	28	2.1	28	84	6	77	56	13	8	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19099349--19099445	44	2.2	44	90	0	149	57	8	1	32	1.35
19099444--19099508	31	2.1	31	82	5	78	50	12	7	29	1.67
19099540--19099577	18	2.1	18	90	0	58	52	21	5	21	1.66
19099679--19099744	1	66.0	1	78	0	60	87	3	6	3	0.71
19099678--19099744	26	2.7	26	77	22	72	86	2	7	2	0.76
19099659--19099746	25	3.5	26	75	11	78	82	5	6	4	0.93
19101087--19101153	12	5.5	11	76	11	53	62	11	0	25	1.29
19103102--19103127	7	3.7	7	100	0	52	11	0	0	88	0.52
19105278--19105321	13	3.3	13	87	6	70	45	11	9	34	1.72
19106254--19106288	15	2.2	16	90	5	54	2	8	0	88	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129