genome.fa.s13.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  18  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3504219--3504277	25	2.3	26	88	8	86	45	3	0	50	1.18
3504219--3504291	25	2.9	23	79	18	74	45	2	0	52	1.15
3504272--3504582	13	21.9	15	66	26	55	45	0	1	51	1.17
3504283--3504334	16	3.1	16	73	24	52	53	0	0	46	1.00
3504283--3504352	19	3.8	18	72	14	54	55	0	1	42	1.08
3504364--3504412	7	6.6	7	82	13	53	38	0	0	61	0.96
3504364--3504582	38	6.1	37	73	17	158	41	0	1	55	1.16
3504362--3504495	53	2.5	52	82	8	164	41	1	1	55	1.18
3504414--3504584	61	2.7	62	78	12	172	41	1	2	54	1.20
3505452--3505495	14	3.1	14	83	9	54	45	0	0	54	0.99
3505657--3505682	1	26.0	1	100	0	52	100	0	0	0	0.00
3506018--3506098	31	2.6	31	82	2	90	38	7	7	46	1.60
3506572--3506617	18	2.5	19	82	7	58	52	6	4	36	1.47
3507305--3507359	20	2.7	20	82	2	56	41	20	9	29	1.82
3508206--3508243	20	1.9	19	85	15	51	47	0	0	52	1.00
3508432--3508490	20	3.0	20	94	0	100	18	30	28	22	1.97
3508654--3508682	3	9.7	3	100	0	58	31	0	0	68	0.89
3509307--3509353	19	2.5	19	82	0	58	29	29	19	21	1.97
3509678--3509761	26	3.6	24	72	24	65	5	4	3	85	0.81
3509678--3509761	25	3.6	25	71	20	65	5	4	3	85	0.81
3509684--3509760	30	2.6	30	85	8	95	6	3	3	85	0.81
3509677--3509735	1	59.0	1	89	0	73	5	1	1	91	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3509756--3510041	156	1.8	157	95	0	520	30	14	17	37	1.90
3515323--3515352	15	2.1	14	93	6	51	50	6	36	6	1.55
3520244--3520301	8	6.8	8	86	11	53	81	1	6	10	0.95
3520244--3520285	10	4.6	9	88	11	59	85	2	2	9	0.77
3520244--3520301	17	3.3	17	85	4	71	81	1	6	10	0.95
3520242--3520345	9	11.8	9	80	14	92	75	0	12	11	1.11
3520255--3520339	17	4.8	18	78	16	88	75	0	12	11	1.05
3521356--3521935	42	14.2	39	88	9	763	22	17	21	38	1.93
3521356--3521935	83	7.1	79	90	7	785	22	17	21	38	1.93
3521356--3521935	206	2.8	204	90	8	896	22	17	21	38	1.93
3521943--3522059	15	7.5	15	78	16	121	87	8	0	4	0.67
3521943--3522060	54	2.2	52	84	11	150	86	8	0	5	0.70
3521943--3522046	1	104.0	1	77	0	100	88	8	0	2	0.61
3522162--3522220	20	3.0	20	94	0	100	18	30	28	22	1.97
3522263--3522297	13	2.6	13	90	4	52	0	11	0	88	0.51
3522264--3522305	18	2.3	19	83	4	50	2	9	2	85	0.77
3522390--3522418	3	9.7	3	100	0	58	31	0	0	68	0.89
3522914--3522984	31	2.3	31	80	4	90	28	23	23	23	2.00
3523039--3523085	19	2.5	19	82	0	58	29	29	19	21	1.97
3523409--3523444	1	36.0	1	100	0	72	0	0	0	100	0.00
3523462--3523920	156	2.9	160	94	2	768	28	14	17	39	1.89
3524868--3524938	36	1.9	37	85	2	99	8	18	0	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3527443--3527746	160	1.9	162	95	1	558	40	17	14	27	1.89
3528058--3528102	19	2.4	19	84	0	63	22	20	31	26	1.98
3528153--3528225	31	2.4	31	88	4	103	27	23	26	23	2.00
3528857--3528898	20	2.1	20	90	0	66	23	19	30	26	1.98
3529019--3529094	1	76.0	1	78	0	71	3	0	7	88	0.63
3529012--3529094	9	9.3	9	87	7	91	4	0	8	86	0.69
3529102--3529716	42	15.0	42	88	7	849	37	22	17	21	1.94
3529102--3529716	82	7.5	81	88	7	822	37	22	17	21	1.94
3529102--3529716	124	5.0	123	88	6	853	37	22	17	21	1.94
3530905--3530943	8	4.9	8	93	0	69	10	15	0	74	1.07
3532259--3532368	8	13.2	8	78	15	100	86	9	0	4	0.70
3532325--3532375	5	9.0	6	81	16	56	86	3	0	9	0.70
3532259--3532361	1	103.0	1	78	0	89	87	8	0	3	0.66
3532481--3532520	20	2.0	20	90	0	62	20	30	27	22	1.98
3532682--3532710	3	9.7	3	100	0	58	31	0	0	68	0.89
3533215--3533273	31	1.9	31	85	0	82	28	23	22	25	1.99
3533328--3533374	19	2.5	19	82	0	58	29	29	19	21	1.97
3533697--3533741	1	45.0	1	100	0	90	0	0	0	100	0.00
3533771--3534058	157	1.8	159	96	1	544	28	15	17	38	1.90
3534771--3534806	18	2.0	18	100	0	72	66	5	16	11	1.40
3535406--3535489	21	3.9	21	73	10	71	32	3	11	52	1.55
3535416--3535480	21	3.2	20	80	6	76	30	3	10	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3535524--3535587	31	2.1	31	90	0	101	26	6	14	53	1.64
3535554--3535608	20	2.6	23	77	13	64	30	5	10	52	1.59
3535591--3535615	12	2.1	12	100	0	50	32	8	8	52	1.60
3535665--3535706	21	2.0	20	90	4	66	26	4	11	57	1.54
3535574--3535718	32	4.5	33	78	7	147	27	5	13	53	1.61
3535826--3535864	19	2.1	19	85	0	51	28	2	12	56	1.50
3535833--3535894	24	2.6	24	85	7	81	32	1	11	54	1.45
3535957--3536070	60	1.9	58	81	10	133	32	5	13	49	1.64
3544513--3544554	21	2.0	21	85	0	57	28	16	11	42	1.84
3547624--3547654	2	15.5	2	93	0	53	51	3	0	45	1.17
3550079--3550108	9	3.4	9	95	4	53	53	0	0	46	1.00
3552458--3552536	41	1.9	42	82	7	99	49	0	2	48	1.14
3552964--3552998	15	2.2	16	90	5	54	82	0	2	14	0.77
3553099--3553132	13	2.8	12	86	8	50	64	2	14	17	1.40
3554575--3554633	24	2.6	22	78	7	73	33	0	0	66	0.92
3555140--3555170	14	2.3	14	94	5	55	64	0	0	35	0.94
3555845--3555870	3	8.7	3	100	0	52	65	0	0	34	0.93
3556610--3556657	21	2.2	21	81	3	60	60	0	0	39	0.97
3563318--3563384	27	2.5	27	82	4	73	28	16	32	22	1.95
3565187--3565217	5	6.2	5	100	0	62	80	0	0	19	0.71
3565888--3565932	20	2.2	20	92	0	72	40	2	0	57	1.11
3571115--3571169	17	3.0	17	84	12	65	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3571310--3571381	25	3.0	25	78	13	71	61	0	0	38	0.96
3578021--3578066	18	2.6	18	75	0	56	43	0	2	54	1.12
3578055--3578146	33	2.8	32	76	15	98	57	1	1	40	1.13
3580037--3580152	60	2.0	58	83	6	146	43	10	18	27	1.83
3583371--3583439	33	2.1	33	97	0	129	24	17	23	34	1.96
3584751--3584782	2	16.0	2	93	0	55	50	3	0	46	1.17
3585003--3585040	17	2.5	15	87	12	51	47	0	0	52	1.00
3586007--3586034	2	14.0	2	100	0	56	50	0	0	50	1.00
3586228--3586260	12	3.0	11	87	12	50	45	0	0	54	0.99
3586232--3586304	29	2.4	31	86	4	96	49	2	1	46	1.24
3588037--3588071	17	2.1	16	89	5	52	71	0	0	28	0.86
3589214--3589313	50	2.0	50	100	0	200	22	14	18	46	1.84
3607672--3608070	199	2.0	198	98	0	771	37	10	6	46	1.62
3609182--3609230	17	3.0	17	76	11	57	48	0	2	48	1.12
3609176--3609266	28	3.1	28	81	9	92	49	1	2	47	1.21
3610184--3610209	2	13.0	2	100	0	52	50	0	0	50	1.00
3611031--3611122	43	2.2	43	90	2	141	30	4	21	43	1.72
3611047--3611138	43	2.1	43	82	4	105	36	5	18	39	1.74
3611254--3611310	16	3.3	17	83	16	57	49	0	0	50	1.00
3621777--3621932	79	2.0	78	85	5	208	35	13	11	39	1.81
3623883--3623921	18	2.2	18	86	9	53	64	2	7	25	1.33
3631718--3631783	25	2.7	25	83	6	73	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3633042--3633094	27	2.0	27	81	7	63	45	3	3	47	1.39
3633738--3633799	26	2.4	26	81	7	65	61	9	3	25	1.42
3646827--3646872	4	11.5	4	78	17	51	23	0	2	73	0.94
3646828--3646883	16	3.5	16	79	13	62	19	0	5	75	1.00
3646827--3646874	23	2.0	23	84	11	62	22	0	2	75	0.91
3647077--3647120	21	2.2	20	83	4	52	11	2	4	81	0.92
3647082--3647142	32	1.9	32	89	0	95	16	4	3	75	1.11
3647321--3647349	8	3.6	8	100	0	58	27	0	0	72	0.85
3650585--3650644	26	2.3	27	79	2	68	60	5	1	33	1.29
3653338--3653374	13	2.8	13	91	0	56	16	24	16	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129