genome.fa.s13.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  48  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9583891--9583932	21	2.0	21	85	4	57	33	11	21	33	1.90
9589609--9589658	21	2.4	21	93	0	82	58	22	4	16	1.55
9590099--9590144	16	2.8	17	83	6	58	78	17	0	4	0.91
9600370--9600428	30	2.0	30	83	12	77	57	1	15	25	1.47
9600404--9600462	30	2.2	26	77	19	66	67	5	6	20	1.33
9600411--9600471	30	2.0	30	100	0	122	67	6	6	19	1.36
9605770--9605860	28	3.2	29	80	9	89	48	0	1	50	1.08
9606466--9606490	2	12.5	2	100	0	50	52	0	0	48	1.00
9606516--9606553	13	3.0	13	80	3	51	42	0	2	55	1.14
9606540--9606584	24	2.0	24	86	8	67	53	0	2	44	1.13
9606571--9606618	18	2.4	21	83	10	66	60	0	0	39	0.97
9606507--9606618	42	2.8	39	77	9	100	52	0	1	45	1.11
9607764--9607794	16	1.9	16	93	0	53	12	12	38	35	1.82
9616921--9616955	14	2.3	16	90	9	56	54	2	0	42	1.15
9618841--9618899	28	2.1	28	81	9	68	50	5	0	44	1.24
9618831--9619025	62	3.1	61	83	9	191	49	8	2	40	1.44
9618866--9619022	62	2.5	63	86	7	214	49	10	2	38	1.51
9618958--9619145	83	2.2	84	89	6	285	50	10	2	37	1.49
9619040--9619274	130	1.8	129	88	2	364	49	9	2	38	1.50
9628116--9628162	3	15.7	3	100	0	94	31	0	0	68	0.90
9634026--9634072	19	2.5	19	86	6	60	44	0	2	53	1.12
9636806--9636830	13	1.9	13	100	0	50	48	16	0	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9637503--9637701	33	6.1	33	72	16	166	41	2	1	55	1.18
9637518--9637696	40	4.4	40	75	10	159	40	2	1	55	1.19
9637614--9637684	8	9.0	8	70	20	51	42	4	0	53	1.20
9637614--9637701	21	3.9	23	75	18	85	42	3	0	54	1.17
9637503--9637693	17	10.9	18	68	20	72	41	2	1	54	1.19
9638261--9638294	10	3.3	10	88	8	50	32	0	14	52	1.42
9639654--9639684	13	2.4	13	94	0	53	83	0	3	12	0.75
9639980--9640024	3	15.0	3	100	0	90	66	0	0	33	0.92
9641424--9641477	26	2.0	27	96	3	101	44	24	14	16	1.85
9641646--9642393	374	2.0	374	91	0	1199	37	14	15	32	1.88
9643542--9643843	34	8.9	34	77	7	254	26	15	20	37	1.93
9643542--9643843	68	4.4	68	78	6	306	26	15	20	37	1.93
9643807--9643902	40	2.4	40	85	1	129	31	15	12	40	1.85
9643879--9643956	41	1.9	41	81	5	95	29	12	15	42	1.84
9644393--9644446	23	2.4	23	78	3	65	37	5	16	40	1.72
9645118--9645180	12	5.2	12	76	19	60	15	1	3	79	0.94
9645118--9645176	19	3.2	19	92	4	95	15	1	3	79	0.94
9645118--9645177	18	3.3	18	84	9	77	15	1	3	80	0.93
9645770--9645810	22	1.9	21	85	5	55	78	7	2	12	1.06
9646466--9646507	9	4.7	9	82	8	50	47	0	0	52	1.00
9646453--9646533	15	5.2	15	82	12	101	45	0	0	54	0.99
9649260--9649303	11	3.8	11	82	11	61	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9649252--9649304	24	2.2	23	87	9	79	69	0	0	30	0.88
9649254--9649298	16	2.9	16	87	9	58	73	0	0	26	0.84
9649252--9649298	15	2.8	16	81	12	51	72	0	0	27	0.85
9649262--9649332	24	3.0	24	83	4	90	69	1	0	29	0.98
9649837--9649881	19	2.2	21	88	7	67	66	2	0	31	1.04
9649907--9649945	13	3.0	13	80	0	51	46	5	0	48	1.24
9651846--9651882	2	19.5	2	83	10	51	48	0	2	48	1.15
9655660--9655741	24	3.5	25	70	20	68	34	6	0	59	1.22
9659542--9659607	28	2.4	27	87	7	89	69	4	6	19	1.27
9659542--9659607	27	2.4	28	85	7	82	69	4	6	19	1.27
9659572--9659619	19	2.3	21	75	10	55	68	6	4	20	1.28
9659598--9659658	7	9.0	7	73	22	51	72	1	3	22	1.09
9659627--9659664	19	2.1	19	95	5	69	76	0	5	18	0.97
9671397--9671440	15	3.1	14	84	9	54	86	0	9	4	0.70
9672331--9672392	14	4.6	14	76	13	58	74	0	3	22	0.96
9672328--9672394	13	5.7	12	77	19	54	73	0	2	23	0.97
9672333--9672400	18	3.8	18	77	14	61	72	0	2	25	0.99
9672370--9672405	13	2.9	12	88	8	54	72	0	2	25	0.98
9672354--9672405	19	2.8	18	83	11	61	73	0	3	23	1.00
9672352--9672411	18	3.3	18	78	19	63	73	0	5	21	1.02
9700537--9700582	15	3.2	15	75	6	51	54	6	0	39	1.26
9700515--9700561	21	2.2	21	80	0	58	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9701021--9701050	2	15.0	2	92	0	51	46	0	3	50	1.18
9701250--9701283	7	4.9	7	92	0	50	50	47	0	2	1.16
9701369--9701409	15	2.6	16	85	14	59	4	24	0	70	1.06
9707197--9707411	94	2.3	93	85	0	268	27	10	23	38	1.88
9708568--9708617	20	2.6	20	81	6	59	80	6	8	6	1.04
9708970--9709010	16	2.7	15	82	17	50	82	2	12	2	0.86
9711229--9711455	50	4.6	50	77	4	181	36	12	11	38	1.81
9711342--9711455	49	2.3	49	83	8	135	38	12	10	38	1.77
9714798--9714844	16	2.9	15	84	15	58	82	0	6	10	0.82
9714816--9714851	18	2.0	18	88	0	54	77	2	2	16	1.00
9722595--9722714	31	3.8	31	76	7	118	40	3	6	49	1.46
9722596--9722731	62	2.2	63	82	7	170	39	2	6	50	1.43
9723369--9723446	28	2.7	28	74	18	72	62	3	2	30	1.26
9725544--9725606	26	2.6	24	85	7	74	63	17	0	19	1.31
9725584--9725623	21	1.9	22	85	10	57	62	12	0	25	1.30
9725700--9725724	3	8.3	3	100	0	50	36	0	0	64	0.94
9726132--9726273	73	2.0	72	88	4	214	26	16	14	42	1.87
9728370--9728399	14	2.1	14	93	0	51	16	36	16	30	1.91
9728890--9728937	18	2.7	18	78	12	53	20	0	6	72	1.05
9729050--9729086	20	1.9	18	89	10	56	70	0	5	24	1.08
9729166--9729210	18	2.5	19	86	13	60	68	0	0	31	0.89
9729349--9729388	21	2.0	20	90	5	62	57	27	2	12	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729436--9729518	29	2.8	30	80	12	91	46	30	2	20	1.63
9729492--9729545	22	2.4	23	81	9	58	40	35	3	20	1.70
9729529--9729710	29	6.5	28	72	11	140	48	26	3	20	1.67
9729529--9729710	14	12.9	14	72	14	115	48	26	3	20	1.67
9729553--9729653	41	2.4	43	87	11	156	49	25	3	20	1.66
9729529--9729713	42	4.4	40	72	19	137	48	27	3	21	1.67
9739043--9739673	132	4.8	132	79	7	554	23	18	17	39	1.91
9739383--9739445	22	2.9	22	80	4	65	30	20	17	31	1.96
9739111--9739654	263	2.1	262	81	4	612	24	19	16	39	1.92
9739756--9739798	22	2.0	22	90	0	68	27	23	16	32	1.96
9739607--9739895	110	2.6	109	82	2	308	22	19	17	40	1.91
9739866--9739983	22	5.4	22	84	6	125	33	23	14	27	1.94
9739866--9739983	44	2.7	43	88	2	155	33	23	14	27	1.94
9739886--9739983	22	4.5	22	87	5	144	33	24	13	28	1.93
9740194--9740292	37	2.7	37	80	0	117	12	22	22	43	1.86
9740381--9740424	22	2.0	22	82	8	54	29	20	15	34	1.94
9740324--9740529	108	1.9	110	84	6	276	23	19	16	39	1.92
9741949--9741998	18	2.8	19	75	22	54	22	0	6	72	1.07
9742224--9742272	24	2.0	24	84	7	64	69	0	0	30	0.89
9742226--9742260	18	1.9	18	88	11	54	68	0	0	31	0.90
9742462--9742511	13	3.4	15	76	18	52	44	38	0	18	1.50
9742459--9742559	45	2.2	46	83	13	122	45	36	0	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9742514--9742586	29	2.5	28	82	4	92	43	32	0	23	1.54
9742599--9742729	42	3.1	42	84	1	154	48	27	4	19	1.68
9742662--9742730	27	2.5	26	77	11	66	44	26	5	23	1.75
9742599--9742771	14	12.3	14	68	14	79	49	27	4	19	1.66
9742741--9742799	14	4.2	14	75	14	50	54	25	3	16	1.58
9747591--9747621	3	10.3	3	92	0	53	0	29	0	70	0.87
9750903--9750961	23	2.5	23	75	13	57	44	1	3	50	1.28
9751140--9751192	24	2.2	24	83	6	63	28	5	3	62	1.35
9763144--9763169	3	8.7	3	100	0	52	30	0	0	69	0.89
9764790--9765262	238	2.0	237	94	1	822	34	13	11	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129