genome.fa.s13.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  38  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7858099--7858406	90	3.3	90	83	9	363	36	22	12	28	1.91
7858099--7858407	46	6.6	47	83	8	357	35	22	12	28	1.91
7871740--7871776	3	12.0	3	94	5	65	64	0	0	35	0.94
7872677--7872706	2	15.0	2	100	0	60	50	0	0	50	1.00
7872743--7872784	21	2.0	20	86	9	57	40	11	2	45	1.54
7875525--7875585	23	2.7	23	82	10	79	34	6	16	42	1.74
7875649--7875695	22	2.1	22	84	4	58	31	12	21	34	1.91
7875664--7875706	22	2.0	22	85	0	59	23	16	25	34	1.95
7887238--7887350	54	2.1	53	79	8	122	23	31	15	29	1.95
7889566--7889601	18	2.0	18	94	0	63	41	27	2	27	1.70
7892896--7892963	27	2.4	29	78	9	70	27	2	2	66	1.21
7893191--7893240	26	1.9	26	84	8	66	32	8	0	60	1.26
7896555--7896734	100	1.8	100	96	0	333	27	20	10	41	1.85
7898669--7898787	59	2.0	59	98	0	229	21	12	20	45	1.84
7900637--7900673	13	2.7	14	87	4	58	43	0	0	56	0.99
7901297--7903766	613	4.0	615	92	3	3983	40	7	10	41	1.68
7907433--7907477	22	2.0	22	83	8	56	31	0	13	55	1.38
7924229--7924258	10	3.1	10	95	4	53	36	0	0	63	0.95
7930296--7930356	30	2.0	30	87	0	86	47	4	3	44	1.41
7942347--7942417	35	2.0	35	97	0	133	19	14	26	39	1.90
7942382--7942741	44	8.4	44	75	9	307	21	13	21	43	1.87
7942314--7942559	130	2.0	122	84	8	323	21	13	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7942385--7942741	85	4.2	86	81	6	262	21	13	21	43	1.87
7942563--7942708	40	3.5	39	70	13	112	22	14	23	39	1.91
7942527--7942741	85	2.5	85	89	2	317	21	13	21	42	1.87
7943428--7943771	60	5.7	61	76	11	300	35	14	6	44	1.70
7943424--7943693	118	2.3	118	87	3	384	36	14	7	41	1.73
7943424--7943762	66	5.6	61	77	11	283	36	14	6	42	1.72
7943786--7943889	8	12.5	8	74	18	79	78	1	2	16	0.95
7943786--7943832	17	2.7	18	80	9	62	82	0	4	12	0.80
7943786--7943891	11	9.3	11	69	10	52	79	1	2	16	0.94
7943899--7943931	12	2.9	12	86	13	52	6	36	36	21	1.78
7944838--7944886	14	3.6	14	83	5	57	71	6	0	22	1.08
7944851--7944882	7	4.6	7	96	0	55	75	9	0	15	1.05
7945065--7945264	46	4.5	45	82	7	239	37	22	17	23	1.94
7945069--7945264	88	2.2	89	84	7	247	37	21	17	23	1.94
7945266--7945323	9	6.4	9	78	11	57	3	0	10	86	0.69
7945266--7945323	11	5.3	10	80	15	62	3	0	10	86	0.69
7945400--7945937	41	13.3	41	81	7	591	40	21	14	23	1.89
7945612--7945678	34	2.0	34	82	5	82	38	23	11	25	1.89
7945400--7945937	123	4.4	124	84	6	697	40	21	14	23	1.89
7946210--7946314	43	2.4	44	78	15	119	34	18	11	36	1.86
7946499--7946557	22	2.7	21	86	5	73	33	20	8	37	1.83
7947781--7947831	8	6.2	8	80	8	59	3	13	0	82	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7947800--7947830	9	3.6	9	95	4	55	0	6	0	93	0.35
7947802--7947831	15	2.0	15	93	0	51	0	10	0	90	0.47
7947815--7947855	22	1.9	21	90	5	64	7	17	0	75	1.02
7951651--7952032	56	6.7	55	70	17	228	36	12	5	45	1.65
7951714--7951845	67	2.0	67	88	5	196	36	13	4	45	1.64
7951781--7952033	114	2.3	112	91	4	415	35	12	5	46	1.65
7952045--7952111	7	9.9	7	81	15	79	85	0	0	14	0.61
7952043--7952112	15	4.5	15	83	13	97	84	0	0	15	0.63
7952046--7952158	21	5.1	22	73	17	92	76	3	0	20	0.94
7952043--7952161	4	30.8	4	70	23	69	75	3	0	21	0.94
7952048--7952161	15	7.4	15	75	17	76	75	3	0	21	0.95
7952976--7953073	11	9.2	11	68	21	57	61	5	7	26	1.43
7952950--7953042	20	4.4	21	70	11	64	63	4	4	27	1.32
7953050--7953099	18	2.8	18	87	0	73	62	0	6	32	1.20
7953188--7953251	25	2.6	24	78	11	58	73	3	0	23	0.97
7953323--7953470	23	6.3	23	75	16	126	34	4	1	60	1.24
7953320--7953473	48	3.2	46	78	17	147	34	3	1	60	1.23
7961576--7961607	16	2.1	16	94	5	57	59	6	15	18	1.57
7964756--7965033	60	4.7	59	88	5	400	36	13	6	43	1.70
7964756--7965033	119	2.3	119	88	3	418	36	13	6	43	1.70
7965078--7965148	10	6.8	10	77	16	56	76	2	5	15	1.10
7965048--7965149	10	9.4	11	69	20	54	74	2	6	15	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7965997--7966042	15	3.1	15	87	0	56	73	6	6	13	1.22
7966206--7966230	6	4.2	6	100	0	50	84	0	0	16	0.63
7966240--7966272	2	16.5	2	100	0	66	51	0	0	48	1.00
7968893--7968943	12	4.2	12	82	5	57	84	0	11	3	0.75
7970345--7970383	11	3.5	11	89	6	60	82	0	0	17	0.68
7970345--7970384	12	3.4	12	93	3	64	82	0	0	17	0.67
7971065--7971103	10	3.5	11	89	10	62	76	15	0	7	0.99
7974571--7974621	17	2.8	18	82	11	68	82	3	9	3	0.93
7974792--7974848	22	2.6	22	86	5	71	36	21	14	28	1.92
7974845--7974902	23	2.5	23	74	0	62	34	13	13	37	1.85
7975162--7975222	23	2.7	23	89	0	86	31	26	13	29	1.93
7977810--7977839	2	15.0	2	100	0	60	50	0	0	50	1.00
7980032--7980056	13	1.9	13	100	0	50	24	16	16	44	1.86
7980540--7980579	21	1.9	21	90	10	64	70	7	12	10	1.35
7981577--7981624	25	1.9	25	91	0	78	16	0	6	77	0.97
7982821--7982885	32	2.0	32	96	0	121	33	18	10	36	1.86
7986228--7986260	2	16.5	2	93	0	57	54	0	0	45	0.99
7994050--7994079	10	3.1	10	95	4	53	36	0	0	63	0.95
8012124--8012497	44	8.7	44	75	9	324	20	13	21	44	1.85
8012138--8012347	86	2.4	85	86	5	296	20	13	22	43	1.86
8012125--8012444	130	2.5	130	82	6	364	21	13	21	43	1.87
8012302--8012514	86	2.5	86	86	1	304	21	11	22	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8013203--8013503	58	5.1	58	77	14	285	37	13	6	42	1.69
8013203--8013483	121	2.3	120	89	7	430	36	14	6	42	1.71
8013495--8013627	8	15.6	8	71	21	85	76	1	4	17	1.02
8013495--8013624	14	10.0	14	71	18	70	76	1	4	17	1.04
8014110--8014138	11	2.7	11	94	5	51	41	10	10	37	1.73
8014475--8014540	26	2.6	24	78	19	64	59	4	3	33	1.33
8014632--8014674	14	3.1	14	80	12	52	79	6	0	13	0.93
8014632--8014674	21	2.0	22	86	4	61	79	6	0	13	0.93
8014840--8014995	46	3.5	46	85	4	203	37	21	18	22	1.94
8015049--8015109	1	61.0	1	73	0	50	3	0	9	86	0.67
8015049--8015109	10	6.4	10	81	5	65	3	0	9	86	0.67
8015197--8015682	41	12.0	41	76	12	438	38	22	14	24	1.92
8015267--8015628	198	1.8	196	88	4	550	38	21	14	24	1.91
8015189--8015682	123	4.1	121	77	13	516	39	22	14	24	1.91
8015980--8016061	43	1.9	42	90	7	130	36	15	9	37	1.81
8016244--8016284	22	1.9	21	95	5	73	34	19	9	36	1.85
8017578--8017603	9	2.9	9	100	0	52	0	7	0	92	0.39
8017570--8017643	20	3.6	21	70	25	68	8	12	0	79	0.92
8017570--8017643	30	2.4	30	81	2	85	8	12	0	79	0.92
8021588--8021631	17	2.5	17	88	3	61	52	0	4	43	1.22
8021516--8021898	133	3.0	130	80	10	382	37	11	5	45	1.63
8021646--8021928	61	4.7	59	77	12	258	36	10	4	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8021646--8021918	122	2.3	120	85	9	362	36	10	4	47	1.60
8021931--8022051	8	14.9	8	70	16	88	77	1	3	17	0.98
8021939--8021997	13	4.8	13	72	19	56	79	0	5	15	0.89
8021931--8022053	14	8.3	14	74	18	90	78	1	3	17	0.97
8021951--8022008	22	2.5	23	86	10	75	81	0	5	13	0.86
8022281--8022327	9	5.0	9	83	16	60	0	40	0	59	0.97
8022281--8022325	21	2.1	22	95	4	83	0	40	0	60	0.97
8022830--8022892	17	3.7	17	74	19	60	73	4	0	22	1.02
8022830--8022892	34	1.9	34	84	12	87	73	4	0	22	1.02
8022933--8022985	18	2.9	18	75	10	54	64	1	1	32	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129