genome.fa.s13.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  57  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133017--11133074	6	8.7	7	82	14	54	62	1	1	34	1.16
11133223--11133261	16	2.6	14	88	8	51	51	25	5	17	1.66
11133236--11133295	32	1.9	31	83	10	77	45	26	5	23	1.73
11133370--11133423	15	3.6	15	82	0	63	46	33	1	18	1.60
11133400--11133462	16	4.1	15	80	10	65	49	33	3	14	1.59
11133370--11133462	15	6.1	15	77	6	62	48	32	2	17	1.59
11133549--11133580	16	2.1	16	94	5	57	50	31	0	18	1.48
11141800--11141843	17	2.5	17	88	3	61	9	2	9	79	1.02
11141959--11142032	22	3.3	22	71	14	69	50	18	2	28	1.61
11141962--11142034	24	3.1	24	67	21	64	53	19	2	24	1.58
11141893--11142084	46	4.2	46	82	1	197	51	14	5	28	1.65
11141889--11142080	92	2.1	92	81	5	228	49	14	6	29	1.68
11142316--11142505	48	4.3	45	74	13	137	42	14	11	31	1.82
11142446--11142555	48	2.3	48	90	0	166	44	18	5	31	1.72
11143727--11143755	9	3.3	9	90	9	51	0	13	0	86	0.58
11160691--11160715	5	5.0	5	100	0	50	20	0	0	80	0.72
11161529--11161601	36	2.0	36	91	0	119	38	8	1	52	1.40
11161819--11161882	25	2.5	25	78	12	69	25	3	10	60	1.44
11168407--11168436	2	15.0	2	92	0	51	46	0	3	50	1.18
11168936--11168961	2	13.0	2	100	0	52	50	0	0	50	1.00
11170300--11170350	25	2.1	24	85	3	66	60	0	5	33	1.21
11172198--11172254	11	5.3	10	78	14	51	57	1	3	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11172208--11172369	9	16.6	9	68	16	56	54	7	1	37	1.37
11172237--11172318	28	2.9	27	80	8	76	59	6	2	31	1.35
11172328--11172476	10	14.6	10	68	15	56	54	4	0	40	1.26
11172328--11172369	19	2.2	19	86	0	57	54	4	0	40	1.21
11172498--11172552	10	5.8	9	85	8	65	58	7	1	32	1.36
11172498--11172554	19	3.0	18	85	10	69	56	7	1	35	1.37
11172498--11172560	20	3.2	20	86	2	65	57	6	1	34	1.34
11172630--11172673	22	2.0	22	86	0	61	45	6	2	45	1.42
11172677--11172712	16	2.2	17	95	5	65	58	2	0	38	1.13
11172715--11172747	17	1.9	17	93	0	57	75	3	0	21	0.93
11172715--11172748	8	4.1	8	85	7	50	73	2	0	23	0.97
11172752--11172805	27	2.0	28	82	10	67	50	7	1	40	1.41
11173721--11173759	18	2.2	18	95	0	69	30	5	28	35	1.79
11173883--11173924	19	2.1	20	86	8	59	47	0	0	52	1.00
11176894--11176918	12	2.1	12	100	0	50	60	0	32	8	1.26
11178029--11178058	2	15.0	2	100	0	60	50	0	0	50	1.00
11179715--11179744	14	2.1	15	93	6	53	46	0	0	53	1.00
11179737--11179769	11	3.0	11	83	16	50	81	0	0	18	0.68
11179737--11179771	6	6.2	6	93	6	56	80	0	0	20	0.72
11179844--11179915	5	14.0	5	75	17	51	79	2	2	15	0.97
11179844--11179905	21	3.0	19	78	17	70	77	1	3	17	0.98
11179844--11179916	10	7.0	10	75	9	65	79	2	2	15	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11179845--11179917	22	3.4	21	72	10	67	80	2	2	13	0.93
11180938--11181047	6	19.2	6	71	15	65	62	6	0	30	1.26
11185865--11186047	90	2.0	91	91	1	296	42	11	8	37	1.72
11191450--11191540	26	3.6	25	74	12	71	53	15	5	25	1.63
11191450--11191540	13	7.2	12	71	19	62	53	15	5	25	1.63
11191604--11191638	18	1.9	18	88	11	54	65	5	2	25	1.28
11194639--11194669	7	4.6	7	96	4	55	64	0	12	22	1.27
11194949--11195067	48	2.5	48	82	5	168	42	15	12	28	1.84
11202407--11202643	131	1.8	131	78	5	273	32	16	14	35	1.89
11212019--11212053	3	11.7	3	93	0	61	28	0	0	71	0.86
11216115--11216171	22	2.5	24	78	18	61	61	7	1	29	1.32
11216398--11216454	19	3.3	17	80	9	62	78	5	7	8	1.07
11220323--11220378	17	3.3	17	75	7	60	55	0	1	42	1.10
11228041--11228066	5	5.2	5	100	0	52	80	0	0	19	0.71
11228307--11228367	27	2.2	28	88	2	88	54	1	1	42	1.20
11229043--11229087	23	2.1	22	84	12	58	11	11	2	75	1.13
11231798--11231861	32	2.0	32	96	0	119	39	0	14	46	1.44
11242792--11243224	130	3.3	127	77	6	431	39	8	8	43	1.64
11243663--11243706	2	22.5	2	86	4	63	47	4	0	47	1.22
11244335--11244366	2	16.0	2	100	0	64	50	0	0	50	1.00
11246299--11246330	2	16.0	2	100	0	64	50	0	0	50	1.00
11249439--11249572	69	1.9	69	96	0	250	30	8	22	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11255072--11255105	16	2.1	17	88	5	52	2	0	8	88	0.62
11255215--11255269	25	2.2	24	84	15	67	56	0	0	43	0.99
11257623--11257670	20	2.3	20	79	10	53	41	0	2	56	1.11
11261795--11261837	14	3.1	13	86	10	50	2	4	6	86	0.79
11261810--11261869	32	1.9	32	86	3	86	6	0	11	81	0.86
11261939--11262194	92	2.7	93	84	4	338	45	16	7	31	1.74
11261929--11262197	46	5.8	46	82	2	304	44	15	6	33	1.72
11262306--11262850	125	4.4	123	80	7	546	36	15	14	33	1.88
11262345--11262807	249	1.9	251	83	4	614	35	15	14	34	1.88
11263177--11263308	33	4.0	33	74	3	106	30	20	16	32	1.95
11263177--11263288	33	3.4	33	78	1	107	31	20	16	32	1.94
11263314--11263357	23	1.9	23	85	0	61	27	15	25	31	1.96
11263368--11263460	32	2.9	32	80	6	100	31	15	21	32	1.94
11264213--11264262	5	9.8	5	81	14	50	76	4	2	18	1.04
11264615--11264662	21	2.3	21	85	0	60	68	10	6	14	1.37
11264667--11264788	3	40.7	3	93	0	118	66	10	0	22	1.22
11264821--11264889	26	2.7	26	83	0	84	28	26	24	20	1.99
11265187--11265465	89	3.1	88	79	2	281	48	15	16	20	1.81
11265407--11265590	102	1.8	102	87	0	278	47	14	20	17	1.82
11265492--11265739	119	2.1	119	82	0	298	44	14	20	19	1.86
11274264--11274321	29	2.0	30	89	3	91	50	3	0	46	1.18
11274274--11274319	14	3.2	14	80	14	58	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11281382--11281515	69	1.9	69	95	0	241	32	7	22	38	1.82
11283839--11283871	16	2.1	16	100	0	66	33	12	12	42	1.79
11287996--11288050	25	2.2	24	84	15	67	56	0	0	43	0.99
11289934--11289977	11	4.1	11	83	13	56	54	2	0	43	1.12
11290008--11290052	22	2.0	23	86	4	65	57	2	0	40	1.11
11290391--11290439	25	2.0	25	84	8	64	28	16	6	48	1.69
11291626--11291673	19	2.4	20	86	6	62	43	0	0	56	0.99
11291629--11291687	20	3.0	21	79	18	65	40	0	0	59	0.97
11293562--11293590	7	4.3	7	95	4	51	27	0	0	72	0.85
11295796--11295836	9	4.6	9	82	17	50	7	2	2	87	0.70
11295797--11295872	16	4.7	15	74	16	62	6	1	7	84	0.84
11295808--11295871	35	1.9	33	84	9	85	7	0	9	82	0.83
11295900--11295959	31	2.0	30	86	3	84	50	6	5	38	1.51
11295922--11296199	46	6.0	46	79	7	265	46	14	6	32	1.71
11296309--11296854	125	4.4	124	81	5	575	36	14	14	35	1.86
11296621--11296663	22	2.0	22	90	9	70	30	9	20	39	1.84
11296993--11297087	50	1.9	50	86	0	136	36	18	11	32	1.87
11297182--11297296	33	3.5	33	81	2	149	30	20	15	33	1.94
11297317--11297362	23	2.0	23	86	0	65	30	15	23	30	1.95
11297373--11297465	32	2.9	32	78	12	93	30	15	21	33	1.94
11298228--11298270	19	2.2	20	83	4	52	76	4	4	13	1.10
11298665--11298776	3	37.7	3	94	1	199	66	0	0	33	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11299199--11299471	89	3.1	89	80	3	284	46	15	17	19	1.84
11299385--11299740	119	3.0	119	82	0	408	47	14	19	18	1.83
11300249--11300461	41	5.1	42	72	10	188	31	16	12	38	1.87
11300318--11300472	83	1.9	84	86	9	228	36	16	10	36	1.83
11300315--11300501	84	2.2	82	81	10	220	35	17	10	36	1.84
11300401--11300562	42	3.9	42	74	10	111	32	14	12	39	1.85
11300635--11300798	47	3.5	45	72	7	130	28	14	14	43	1.84
11300831--11301007	46	3.8	46	83	4	205	30	12	14	42	1.82
11308707--11309182	177	2.9	156	77	15	448	31	15	23	29	1.95
11309540--11309591	15	3.3	15	76	10	59	61	9	1	26	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129