genome.fa.s13.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  64  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12191932--12192375	40	11.7	39	74	10	298	26	13	19	40	1.88
12192040--12192244	104	2.0	104	90	1	324	27	12	17	41	1.86
12192116--12192164	24	2.0	24	92	0	80	34	10	12	42	1.76
12192140--12192401	80	3.3	80	87	2	334	28	14	17	40	1.88
12192141--12192435	120	2.5	119	79	10	316	28	15	15	40	1.88
12193449--12193483	11	3.2	11	91	0	52	2	11	0	85	0.69
12195390--12195537	76	1.9	76	93	0	251	20	26	13	39	1.89
12201152--12201208	29	2.0	28	83	6	71	47	12	8	31	1.72
12202611--12202647	19	2.0	18	89	5	56	67	0	0	32	0.91
12202640--12202676	11	3.5	11	82	10	51	72	5	2	18	1.15
12202856--12202895	20	2.0	20	100	0	80	15	50	10	25	1.74
12208526--12208552	4	6.8	4	100	0	54	77	0	0	22	0.76
12209612--12209642	16	1.9	16	100	0	62	19	0	35	45	1.51
12210736--12210772	17	2.2	17	90	4	58	56	13	5	24	1.58
12213114--12213158	22	2.0	22	95	0	81	37	11	8	42	1.72
12216986--12217029	22	2.0	22	90	0	70	31	9	13	45	1.75
12223207--12223371	83	2.0	83	97	0	312	36	10	9	43	1.73
12223650--12223708	29	2.0	30	87	9	86	54	8	11	25	1.65
12224974--12225014	18	2.3	18	86	0	55	58	14	4	21	1.55
12226365--12226414	20	2.5	20	86	0	73	38	18	14	30	1.89
12226796--12226826	15	2.1	15	100	0	62	6	12	19	61	1.53
12229361--12229406	23	2.0	23	95	0	83	21	2	13	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12229975--12230091	61	1.9	59	86	6	164	28	12	10	48	1.74
12230156--12230272	7	17.4	7	70	16	54	49	32	1	16	1.56
12230156--12230313	27	5.8	27	76	12	82	50	31	1	17	1.55
12239549--12239613	24	2.6	25	83	11	71	47	3	0	49	1.17
12239562--12239613	26	2.0	27	88	11	81	48	3	0	48	1.20
12239549--12239618	26	2.8	24	74	19	63	45	2	0	51	1.16
12243933--12244048	32	3.6	31	76	9	99	48	6	6	38	1.55
12244059--12244098	20	2.1	19	85	4	53	42	12	0	45	1.42
12244068--12244107	20	2.0	20	85	5	53	37	15	2	45	1.59
12244244--12244354	31	3.6	31	79	4	127	40	2	7	49	1.44
12258129--12258244	32	3.6	31	76	9	99	48	6	6	38	1.55
12258255--12258294	20	2.1	19	85	4	53	42	12	0	45	1.42
12258264--12258303	20	2.0	20	85	5	53	37	15	2	45	1.59
12258440--12258552	31	3.6	31	79	3	129	39	2	7	50	1.44
12270031--12270220	73	2.6	73	78	11	185	44	6	8	40	1.63
12270033--12270421	71	5.4	71	74	12	285	42	6	11	39	1.67
12270348--12270559	102	2.1	101	91	1	343	50	8	8	33	1.62
12271359--12271535	90	2.0	90	98	0	345	40	18	14	27	1.89
12271682--12271741	13	4.5	13	73	22	52	23	5	0	71	1.05
12271805--12271847	23	1.9	23	85	4	61	48	0	4	46	1.22
12273318--12273377	13	4.5	13	73	22	52	23	5	0	71	1.05
12273441--12273482	22	1.9	22	85	9	59	47	0	4	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12274958--12275016	13	4.5	13	76	19	59	23	5	0	71	1.06
12275080--12275122	23	1.9	23	85	4	61	48	0	4	46	1.22
12276585--12276644	13	4.5	13	73	22	52	23	5	0	71	1.05
12276708--12276750	23	1.9	23	85	4	61	48	0	4	46	1.22
12277418--12277568	57	2.6	57	84	7	180	41	7	12	37	1.72
12277596--12277881	113	2.6	110	82	6	344	44	7	13	35	1.71
12277603--12277880	56	5.0	55	77	10	271	43	7	13	35	1.73
12279166--12279221	25	2.2	25	83	0	76	17	5	16	60	1.53
12280461--12280494	17	1.9	18	88	5	52	2	14	0	82	0.79
12280455--12280498	23	1.9	23	85	0	61	4	13	0	81	0.83
12280469--12280498	15	2.1	15	93	6	53	0	20	0	80	0.72
12281459--12281487	11	2.6	11	100	0	58	20	0	0	79	0.74
12281550--12281594	17	2.6	18	85	7	65	15	11	2	71	1.24
12281555--12281612	18	3.3	17	83	11	64	17	6	1	74	1.12
12281641--12281956	58	5.6	57	79	10	335	42	7	13	36	1.74
12281628--12281956	118	2.9	116	80	10	383	43	7	13	36	1.72
12289387--12289411	12	2.1	12	100	0	50	48	8	16	28	1.74
12291379--12291429	9	5.6	9	95	2	84	33	23	19	23	1.97
12292354--12292393	17	2.4	17	88	12	57	82	0	7	10	0.84
12293367--12293452	43	2.0	43	86	2	120	24	18	22	34	1.96
12293462--12293498	1	37.0	1	94	0	65	97	2	0	0	0.18
12293509--12293691	43	4.2	42	87	6	217	24	13	21	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12293876--12293916	7	6.1	7	83	11	50	26	0	2	70	0.99
12293872--12293923	23	2.2	23	82	6	59	25	0	1	73	0.94
12293938--12293988	12	3.8	15	78	21	60	25	3	0	70	1.04
12293925--12293986	22	2.8	21	78	21	65	24	4	1	69	1.17
12293952--12293996	18	2.4	18	88	3	63	20	4	0	75	0.97
12293869--12293996	15	9.4	12	71	21	51	21	3	1	72	1.09
12293986--12294015	14	2.1	15	93	6	53	0	16	0	83	0.65
12294036--12294080	14	3.4	14	73	20	51	28	4	2	64	1.25
12294989--12295055	6	11.2	6	79	16	50	23	0	0	76	0.79
12295003--12295056	3	17.0	3	77	11	54	29	0	0	70	0.88
12295079--12295133	22	2.6	21	88	8	76	14	7	1	76	1.08
12295210--12295286	33	2.3	33	90	2	118	51	5	12	29	1.62
12295162--12295341	90	2.0	90	84	2	236	46	6	14	32	1.69
12295262--12295460	57	3.5	57	79	5	251	43	6	14	35	1.70
12295252--12295460	113	1.8	115	92	2	359	44	6	13	34	1.69
12296152--12296204	27	2.0	27	92	0	88	20	9	7	62	1.50
12300892--12300950	17	3.4	17	74	6	64	50	1	0	47	1.11
12300894--12300990	43	2.2	46	75	20	109	48	2	3	46	1.29
12304270--12304367	5	18.8	5	71	15	56	37	6	4	52	1.46
12304369--12304424	3	18.7	3	92	0	94	64	1	0	33	1.04
12305397--12305667	147	1.9	144	84	5	366	45	13	8	32	1.74
12307635--12307666	16	2.0	16	93	0	55	71	0	6	21	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12311794--12311827	17	2.0	17	88	0	50	50	5	8	35	1.58
12316570--12316653	45	1.9	42	83	7	105	14	2	7	76	1.10
12316673--12316741	32	2.2	32	83	0	84	57	1	10	30	1.40
12320631--12320659	3	9.7	3	100	0	58	65	0	0	34	0.93
12324910--12324953	23	1.9	23	90	0	70	13	11	9	65	1.46
12328206--12328272	31	2.1	34	86	13	97	37	0	0	62	0.95
12328222--12328275	16	3.4	16	73	12	58	31	0	0	68	0.90
12330252--12330286	3	11.7	3	87	0	52	5	34	28	31	1.81
12355960--12356008	20	2.5	19	87	6	71	30	20	4	44	1.70
12356719--12356772	11	5.1	11	74	14	51	20	11	5	62	1.47
12356719--12356770	20	2.5	21	87	6	70	19	11	5	63	1.47
12356816--12356865	21	2.4	21	80	6	57	26	4	12	58	1.51
12358877--12358927	20	2.6	19	82	14	59	76	13	3	5	1.11
12363028--12363066	13	3.0	13	85	7	53	87	0	5	7	0.68
12363031--12363078	18	2.6	18	93	6	78	85	0	6	8	0.74
12363031--12363079	20	2.6	18	81	12	62	83	0	8	8	0.81
12364087--12364185	42	2.4	42	87	0	135	21	8	23	47	1.77
12364303--12364527	42	5.4	42	80	6	249	24	12	24	39	1.89
12364650--12364898	99	2.5	98	76	7	252	26	12	19	41	1.86
12364834--12364946	42	2.7	42	81	2	129	24	10	22	42	1.85
12364886--12365105	98	2.2	99	80	3	246	26	15	19	39	1.91
12365073--12365182	42	2.7	40	81	7	114	24	16	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12365073--12365165	42	2.3	42	84	3	118	23	15	17	44	1.86
12365684--12365733	9	5.2	9	85	9	64	76	8	2	14	1.10
12366018--12366080	20	3.2	19	86	2	81	68	22	1	7	1.24
12371360--12371550	18	9.7	18	73	20	111	56	3	1	39	1.22
12371360--12371563	31	6.5	31	70	19	122	57	2	1	38	1.23
12371429--12371547	27	4.8	26	75	15	85	57	3	0	38	1.15
12371509--12371563	23	2.4	23	84	6	58	61	0	1	36	1.06
12371647--12371720	26	2.9	27	76	13	75	47	1	1	50	1.18
12371791--12371828	14	2.8	14	88	4	51	36	10	2	50	1.51
12382573--12382637	24	2.8	23	76	6	69	47	3	3	46	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129