genome.fa.s13.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  75  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14182801--14182851	24	2.1	24	85	7	68	23	17	3	54	1.59
14184679--14184738	20	2.7	24	80	17	76	5	21	0	73	1.02
14184652--14184738	44	2.0	43	81	2	102	4	20	0	74	0.99
14184646--14184737	10	10.0	10	75	14	58	5	19	0	75	1.00
14185273--14185297	11	2.3	11	100	0	50	0	8	0	92	0.40
14187194--14187350	79	2.0	79	98	0	305	46	18	12	22	1.82
14189438--14189466	3	9.7	3	100	0	58	31	0	0	68	0.89
14189670--14189705	18	2.0	18	94	0	63	27	0	30	41	1.56
14190677--14190738	23	2.7	22	85	9	72	3	19	1	75	1.02
14190682--14190741	26	2.3	25	78	15	68	3	21	0	75	0.95
14190797--14190850	20	2.6	21	77	14	58	3	25	0	70	1.04
14192049--14192089	18	2.4	18	80	8	50	21	2	2	73	1.07
14193802--14193828	6	4.5	6	100	0	54	85	0	0	14	0.61
14194899--14195161	84	3.1	84	81	4	275	34	16	16	32	1.92
14200216--14200256	19	2.2	19	86	0	55	70	4	2	21	1.18
14205273--14205576	168	1.8	165	81	8	380	33	12	15	38	1.85
14205148--14205733	294	2.0	295	83	5	740	33	12	15	38	1.85
14209064--14209088	12	2.1	12	100	0	50	36	32	8	24	1.84
14208977--14209217	126	1.9	126	84	0	320	41	24	9	24	1.84
14209166--14209212	12	3.9	12	82	0	67	38	21	12	27	1.90
14209166--14209212	24	2.0	24	91	0	76	38	21	12	27	1.90
14209725--14209762	20	1.9	20	88	0	58	42	15	10	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14210188--14210487	64	4.7	63	67	12	175	39	12	14	34	1.83
14209951--14210963	189	5.4	186	85	4	1187	39	12	13	35	1.81
14219368--14219419	3	17.3	3	100	0	104	65	0	0	34	0.93
14223645--14223988	143	2.4	142	82	3	397	30	13	15	39	1.86
14226189--14226239	23	2.3	22	90	6	77	21	5	11	60	1.52
14231379--14231408	14	2.1	14	93	0	51	13	16	6	63	1.50
14234656--14234718	23	2.7	23	85	0	90	84	6	6	3	0.87
14234657--14234717	1	61.0	1	80	0	50	86	4	4	3	0.77
14235764--14235826	24	2.8	22	76	9	63	31	4	9	53	1.54
14235839--14236041	89	2.3	89	80	10	220	34	6	16	41	1.75
14235747--14236048	46	6.7	45	74	10	199	34	6	15	43	1.73
14235967--14236049	23	3.7	22	73	11	71	33	8	12	45	1.71
14236219--14236362	17	8.3	18	76	7	102	34	13	11	40	1.80
14236223--14236407	86	2.1	86	82	3	219	35	13	10	40	1.80
14236223--14236435	86	2.5	84	79	6	214	35	14	9	40	1.79
14236268--14236441	17	10.2	17	70	10	77	36	14	9	39	1.79
14236453--14236552	33	3.0	34	78	8	105	28	17	13	42	1.86
14236532--14236569	17	2.2	17	95	0	67	36	10	10	42	1.74
14236600--14236657	26	2.2	26	84	0	71	32	10	17	39	1.83
14236639--14236685	18	2.6	19	77	9	55	38	10	10	40	1.75
14238234--14238333	21	4.9	21	79	11	109	36	6	9	49	1.59
14238234--14238330	40	2.4	40	84	6	115	36	6	9	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14239756--14239826	25	2.8	25	67	23	67	29	9	4	56	1.51
14239979--14240131	55	2.8	54	76	14	143	35	9	5	49	1.59
14241089--14241125	17	2.1	18	90	5	58	13	0	24	62	1.31
14241952--14242010	6	9.8	6	76	23	54	69	0	10	20	1.17
14241946--14241997	16	3.5	14	76	20	52	71	0	7	21	1.11
14241967--14242004	20	1.9	20	89	10	60	71	0	10	18	1.14
14241959--14242019	26	2.4	26	83	2	88	73	0	8	18	1.07
14241948--14242018	32	2.3	32	83	9	94	71	0	8	19	1.11
14242012--14242079	29	2.4	28	83	9	84	67	5	5	20	1.33
14242409--14242543	13	10.4	13	76	12	118	45	36	0	17	1.54
14242409--14242536	7	19.6	7	78	9	112	45	36	0	17	1.49
14242422--14242560	46	3.0	46	87	5	194	48	33	0	17	1.53
14247227--14247279	16	3.2	16	74	12	54	73	0	5	20	1.03
14247684--14247800	51	2.3	50	82	2	126	38	2	6	52	1.42
14248635--14248675	16	2.6	16	80	3	57	80	0	14	4	0.87
14249584--14249696	34	3.3	34	81	7	131	35	12	15	37	1.85
14249607--14249753	67	2.2	68	79	6	156	31	12	14	40	1.84
14249605--14249763	34	4.7	33	77	6	115	33	13	13	39	1.83
14250234--14250297	29	2.2	30	83	8	78	43	1	4	50	1.32
14250226--14250313	24	3.4	25	79	14	97	38	1	4	55	1.28
14250330--14250394	34	1.9	34	87	0	94	35	15	9	40	1.79
14252075--14252415	62	5.5	60	70	10	229	37	9	14	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14251988--14252413	124	3.4	124	75	8	328	38	9	12	38	1.76
14252045--14252415	124	3.0	121	76	7	370	38	10	13	37	1.79
14252364--14252500	64	2.2	64	82	4	170	43	10	11	35	1.75
14252377--14252498	64	1.9	65	86	1	174	43	9	13	34	1.75
14252526--14252887	63	5.8	61	74	9	295	41	12	10	35	1.77
14252528--14252887	61	5.8	63	74	9	260	41	12	10	35	1.77
14254004--14254048	21	2.1	21	83	0	54	15	2	26	55	1.52
14254372--14254417	23	2.0	23	83	8	58	23	2	0	73	0.94
14254373--14254435	31	2.0	31	82	11	76	22	3	0	74	0.96
14255943--14256329	37	10.5	37	74	7	191	44	16	22	16	1.86
14255943--14256286	74	4.7	74	78	3	309	45	16	22	16	1.85
14255943--14256395	111	4.1	111	76	5	319	45	16	21	15	1.85
14255999--14256410	37	11.1	35	74	9	200	45	16	21	16	1.85
14256616--14256838	33	6.7	33	77	7	166	34	15	18	30	1.93
14257030--14257075	22	2.0	23	87	4	67	26	28	17	28	1.98
14257055--14257119	22	2.9	23	75	9	62	18	23	24	33	1.96
14258114--14258193	40	2.0	41	81	13	98	7	15	1	76	1.07
14259336--14259404	10	7.2	9	76	12	66	1	13	4	81	0.91
14259342--14259384	17	2.3	18	88	11	61	2	13	0	83	0.74
14261044--14261141	4	24.5	4	76	4	90	48	5	22	23	1.70
14261044--14261134	28	3.2	28	82	0	110	50	5	20	23	1.69
14261063--14261129	24	2.8	24	97	0	125	50	5	20	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14264559--14264599	21	2.0	21	85	0	55	14	0	26	58	1.37
14264503--14264585	44	1.9	44	82	2	105	18	0	28	53	1.45
14264530--14264621	28	3.3	27	74	7	76	17	1	30	51	1.53
14264827--14264857	3	10.3	3	100	0	62	32	0	0	67	0.91
14266426--14266549	63	2.0	62	82	9	153	40	9	8	41	1.69
14266452--14266602	63	2.4	63	81	8	168	40	9	9	40	1.71
14268692--14268736	21	2.1	21	84	8	56	26	2	6	64	1.30
14273926--14274459	265	2.0	268	86	4	758	38	12	12	36	1.81
14276391--14276461	31	2.2	32	77	2	81	33	26	14	25	1.94
14276476--14276576	30	3.2	32	83	6	127	39	26	7	25	1.83
14284474--14284534	29	2.1	29	81	6	70	68	3	3	24	1.19
14288247--14288280	2	17.5	2	93	6	61	52	0	0	47	1.00
14289970--14290010	20	2.0	20	85	4	55	58	2	0	39	1.11
14290502--14290532	1	31.0	1	93	0	53	96	3	0	0	0.21
14291067--14291128	2	31.0	2	90	6	72	43	1	6	48	1.38
14291101--14291133	10	3.3	10	91	8	50	48	6	0	45	1.27
14308946--14308982	3	12.3	3	100	0	74	67	0	0	32	0.91
14311265--14311415	76	2.0	76	90	0	239	52	9	12	25	1.68
14312819--14312854	11	3.2	11	84	7	54	80	0	19	0	0.71
14312807--14312849	21	2.0	22	90	4	70	76	0	23	0	0.78
14313641--14313693	8	6.6	8	89	6	72	32	0	0	67	0.91
14313641--14313693	15	3.3	16	86	5	72	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14313640--14313708	8	8.5	8	81	1	66	28	0	2	68	1.04
14313697--14313744	20	2.4	20	75	6	53	41	0	2	56	1.11
14314333--14314367	2	17.5	2	93	0	61	54	0	45	0	0.99
14314321--14314367	18	2.6	18	93	0	76	57	2	40	0	1.11
14316002--14316068	35	1.9	35	90	0	107	14	1	37	46	1.55
14316003--14316072	19	3.8	19	77	11	74	14	1	37	47	1.53
14324844--14324917	27	2.8	27	83	6	98	54	4	5	36	1.43
14332643--14332709	32	2.1	32	91	0	107	29	13	16	40	1.87
14337657--14337694	10	4.0	10	83	13	53	52	0	0	47	1.00
14340226--14340567	144	2.4	145	81	4	379	40	9	15	34	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129