genome.fa.s13.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  2  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245980--246025	17	2.6	18	86	6	58	69	4	0	26	1.07
246012--246050	12	3.2	12	89	7	60	69	12	0	17	1.19
246861--246916	3	19.0	3	83	10	71	66	0	1	32	1.03
247140--247382	38	6.3	38	83	3	297	42	21	9	26	1.83
247140--247382	117	2.1	115	92	2	405	42	21	9	26	1.83
252486--252526	10	4.2	10	84	6	57	19	2	0	78	0.87
252899--252993	6	15.7	6	78	9	68	75	6	3	14	1.12
253212--253244	17	1.9	17	93	0	57	45	21	18	15	1.85
277900--278001	45	2.3	45	79	3	107	22	28	23	25	1.99
278821--279616	398	2.0	398	89	0	1216	24	20	22	32	1.98
292178--292236	24	2.5	24	85	0	82	25	44	15	15	1.85
302514--302692	45	4.0	45	72	2	117	25	26	18	29	1.98
322141--322317	45	3.9	45	84	2	194	22	24	24	27	2.00
322254--322387	44	3.0	45	79	8	150	27	23	21	27	1.99
346743--348330	181	8.8	181	76	6	1243	40	8	9	41	1.67
348346--350475	180	11.9	176	73	9	1174	39	8	9	41	1.69
347842--348832	503	2.0	504	80	5	1148	40	8	9	41	1.69
348349--350475	357	5.9	353	72	10	1074	39	8	9	41	1.69
350655--350687	18	1.9	17	88	11	50	48	6	6	39	1.53
350476--351499	182	5.7	177	73	12	655	40	7	9	42	1.65
357460--359042	181	8.8	179	74	8	1033	40	8	9	41	1.67
358035--358068	17	2.0	17	88	0	50	47	2	11	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359059--361182	180	11.9	179	74	9	1313	40	8	9	41	1.69
358555--359545	503	2.0	504	81	5	1164	40	8	9	41	1.69
359067--360377	537	2.4	534	78	6	1240	39	9	9	41	1.70
361052--361300	133	1.9	133	84	1	338	38	7	9	44	1.65
361365--361397	18	1.9	17	88	11	50	48	6	6	39	1.53
361257--366010	181	26.7	180	73	10	2756	40	8	9	41	1.67
361185--362101	176	5.2	173	75	10	456	40	7	9	42	1.66
361241--362621	530	2.6	523	79	9	1309	40	7	9	42	1.66
362279--370093	181	43.0	180	69	12	2469	40	8	9	41	1.68
361196--370095	720	12.5	719	73	11	4699	40	8	9	41	1.68
361185--366010	361	13.5	355	73	9	2601	40	8	9	41	1.67
365007--365314	162	1.9	162	80	6	365	41	8	11	38	1.71
366582--366914	175	1.9	179	80	5	399	38	8	10	42	1.69
367937--369562	723	2.3	701	79	9	1702	40	8	9	40	1.70
370527--370555	15	1.9	15	100	0	58	24	6	0	68	1.13
372110--372195	8	10.6	8	74	19	72	75	1	1	22	0.94
372126--372200	17	4.9	16	77	22	65	74	1	1	22	0.97
372118--372193	6	11.7	6	72	18	55	76	1	1	21	0.94
372112--372207	34	2.9	32	77	17	99	73	2	1	22	0.99
372110--372207	19	5.0	20	74	16	57	74	2	1	22	0.98
372108--372195	46	1.9	46	84	9	117	76	1	1	21	0.92
372340--375385	181	17.0	179	75	7	2026	39	9	10	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372349--375385	719	4.2	719	89	2	4094	39	9	10	40	1.72
375389--376031	181	3.6	179	78	8	520	41	9	10	38	1.72
376048--380965	181	27.4	181	76	6	3688	40	9	8	40	1.69
376047--382435	717	8.8	720	74	9	3895	40	9	8	40	1.69
381089--382058	358	2.7	359	81	5	1115	41	9	6	41	1.65
381111--382428	181	7.4	180	77	6	990	40	10	7	41	1.68
381111--382428	358	3.7	350	79	6	1058	40	10	7	41	1.68
382322--382535	107	2.0	107	87	1	313	33	13	8	44	1.74
382431--382874	180	2.5	180	79	4	480	41	10	8	39	1.69
382831--382959	62	2.1	62	85	2	170	28	15	9	46	1.77
382699--383143	243	1.8	242	83	3	581	41	11	8	39	1.71
382467--383301	424	2.0	424	82	2	1023	40	10	8	40	1.69
382893--384358	181	8.2	181	75	7	1096	41	10	8	39	1.70
383997--384033	18	2.0	19	89	5	58	35	13	8	43	1.74
384096--384666	308	1.9	308	79	3	657	39	10	8	41	1.70
384389--386871	181	13.9	180	72	10	1336	41	9	8	39	1.69
384422--386334	541	3.6	534	78	7	1687	41	9	8	40	1.68
384389--386381	360	5.6	361	75	9	1075	41	9	8	39	1.68
386764--386972	101	2.1	101	81	0	238	35	11	8	44	1.71
386950--387600	178	3.6	180	73	8	411	42	9	7	41	1.65
387913--388391	176	2.7	175	73	10	436	42	10	8	39	1.70
388348--388814	170	2.7	176	79	7	434	44	10	5	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388511--388914	181	2.2	180	81	3	445	41	10	6	41	1.66
389490--389689	58	3.5	57	80	10	235	37	15	7	40	1.75
389490--389689	59	3.4	58	80	10	255	37	15	7	40	1.75
389673--389704	15	2.1	15	100	0	64	25	18	6	50	1.70
389615--389761	72	2.0	73	93	3	253	34	15	7	42	1.75
391407--391462	7	7.3	7	90	9	67	16	0	0	83	0.64
391410--391469	8	7.4	8	87	12	79	16	0	0	83	0.65
391407--391469	32	2.0	32	93	6	110	17	0	0	82	0.67
391477--391703	42	5.4	41	84	3	240	36	20	18	25	1.94
391477--391731	84	3.0	84	83	2	309	37	19	17	25	1.93
392701--392839	63	2.2	62	83	1	170	33	24	7	34	1.83
393520--393555	18	1.9	19	88	5	56	2	16	0	80	0.83
397545--397744	57	3.5	58	89	1	296	37	14	8	40	1.76
400537--401157	175	3.5	177	74	10	441	41	8	8	41	1.66
402045--402624	59	9.7	57	81	9	608	33	12	8	45	1.73
402045--402622	120	4.8	118	89	5	824	33	12	8	44	1.74
403618--403660	18	2.3	18	96	4	77	74	9	6	9	1.22
403630--403737	44	2.4	44	80	11	114	68	4	5	21	1.29
403716--403883	4	42.2	4	70	15	75	64	3	2	29	1.23
403672--403765	21	4.5	21	78	16	90	68	1	2	28	1.08
403716--403870	21	7.5	21	67	24	82	64	3	1	30	1.20
403672--403883	8	26.6	8	67	19	79	65	3	2	28	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403689--403882	56	3.4	56	72	20	145	64	3	3	28	1.25
404093--404195	43	2.4	43	83	4	120	33	21	19	25	1.97
404093--404212	43	2.8	42	81	5	116	34	20	19	25	1.96
404190--404235	24	2.0	24	91	4	76	34	21	26	17	1.95
404210--404370	41	4.0	41	92	1	279	35	22	18	22	1.96
404214--404370	81	1.9	82	94	1	280	34	22	19	23	1.96
410744--412026	180	7.1	180	76	6	924	42	9	8	40	1.67
410868--412043	181	6.5	180	77	7	944	41	9	8	40	1.67
410871--412043	361	3.3	354	76	6	1020	41	9	8	40	1.67
411896--412194	151	2.0	152	83	4	381	43	10	9	36	1.71
412111--413490	180	7.8	180	72	12	684	42	10	7	39	1.68
412142--412869	181	4.0	178	77	8	462	41	12	7	38	1.71
414376--416857	181	13.8	180	75	8	1728	41	9	8	40	1.68
414909--414964	18	3.1	19	72	15	64	39	10	7	42	1.67
415277--415324	18	2.7	18	84	12	64	43	8	0	47	1.33
414376--416827	361	6.8	356	73	10	1219	41	9	8	40	1.68
416840--416914	38	2.0	38	97	0	141	48	2	12	37	1.55
416901--418487	181	8.9	178	72	9	708	40	10	8	40	1.71
416960--418500	179	8.7	173	70	11	578	40	10	8	40	1.70
418510--418553	15	3.3	15	70	29	53	50	0	4	45	1.22
418501--418553	25	2.1	25	96	3	97	50	1	3	43	1.30
418670--418842	87	2.0	87	89	2	267	46	7	6	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418757--427603	181	48.5	179	67	14	1904	41	10	8	40	1.69
421548--422175	179	3.5	178	83	3	686	41	11	7	39	1.70
422107--422244	69	2.0	69	98	0	267	43	13	7	35	1.73
421596--422785	610	1.9	611	79	4	1326	41	10	8	39	1.70
424338--424509	86	2.0	86	85	6	233	45	6	6	41	1.55
424435--427603	181	17.5	181	73	9	1947	40	10	8	40	1.69
424424--426508	180	11.7	175	74	11	1065	41	10	7	39	1.69
427236--427268	17	2.0	17	88	5	50	33	9	6	51	1.58
426697--427603	361	2.5	360	78	5	853	40	10	8	40	1.69
427256--427898	326	2.0	327	83	4	816	40	8	9	41	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129