genome.fa.s13.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  89  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15977755--15977801	18	2.4	20	86	10	62	51	17	10	21	1.75
15977950--15978009	22	2.7	22	97	2	111	53	10	3	33	1.51
15978923--15979023	48	2.1	48	83	3	123	35	11	8	43	1.73
15980848--15980900	20	2.8	19	83	11	65	39	11	24	24	1.88
15980915--15981054	20	7.2	20	75	10	87	43	14	16	25	1.86
15980988--15981296	18	17.0	18	68	7	142	43	13	17	26	1.86
15980988--15981089	9	11.1	9	69	22	52	45	11	17	25	1.83
15980970--15981091	18	6.5	19	72	10	90	44	12	15	27	1.82
15980988--15981286	37	8.2	37	76	5	225	43	13	17	26	1.85
15981330--15981431	20	5.2	20	72	13	95	49	7	7	35	1.61
15981299--15981446	58	2.6	59	90	4	239	47	8	8	35	1.64
15981628--15981721	40	2.3	40	90	0	143	40	13	7	38	1.73
15987381--15987441	26	2.3	26	97	0	113	36	32	3	27	1.73
15991297--15991344	20	2.4	19	83	10	60	70	0	8	20	1.12
15994214--15994252	17	2.2	19	86	9	55	28	2	0	69	1.02
15994216--15994264	20	2.5	21	80	12	59	34	2	0	63	1.06
15994848--15994874	14	1.9	14	100	0	54	92	0	7	0	0.38
15998132--15998279	68	2.2	68	98	0	287	50	12	13	23	1.76
16000348--16000386	17	2.4	16	86	4	51	76	5	0	17	0.96
16000717--16000768	23	2.2	25	82	6	63	50	1	0	48	1.12
16002100--16002166	29	2.3	30	82	5	75	59	1	1	37	1.16
16014118--16014172	18	3.1	18	73	17	53	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16014103--16014172	34	2.0	35	84	13	92	71	0	25	2	1.00
16014118--16014174	17	3.3	18	71	28	52	73	0	26	0	0.83
16014148--16014191	22	2.0	22	86	0	61	75	0	25	0	0.81
16014262--16014315	23	2.4	22	84	9	65	61	3	11	24	1.46
16014262--16014339	21	3.5	22	85	7	77	57	3	15	23	1.54
16014263--16014339	22	3.5	21	85	7	82	58	3	15	22	1.53
16014355--16014443	23	3.5	25	78	14	78	67	5	11	15	1.39
16014358--16014443	24	3.4	25	73	13	70	67	5	11	15	1.39
16018699--16018730	3	10.7	3	100	0	64	34	0	0	65	0.93
16020982--16021392	145	2.8	143	79	6	443	39	12	14	32	1.84
16021610--16021716	53	2.0	53	85	0	142	33	13	14	39	1.84
16022028--16022288	50	5.4	48	73	17	173	34	15	15	34	1.89
16022108--16022335	90	2.5	91	77	9	259	33	17	14	33	1.91
16022337--16022366	13	2.4	13	94	5	53	0	10	0	90	0.47
16022337--16022368	14	2.4	13	90	10	55	0	9	0	90	0.45
16023319--16023358	19	2.1	19	95	4	71	0	2	10	87	0.63
16023319--16023355	9	3.9	9	92	7	56	0	2	8	89	0.58
16023318--16023358	10	4.1	10	90	9	66	0	2	9	87	0.62
16024270--16024307	20	1.9	20	94	0	67	31	10	5	52	1.58
16028384--16028423	15	2.5	17	80	15	50	5	22	7	65	1.38
16036030--16036069	2	20.0	2	89	0	62	47	2	0	50	1.14
16038356--16038705	145	2.4	144	79	3	382	40	12	13	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16047163--16047535	35	10.7	35	73	9	246	18	20	13	47	1.81
16047750--16047839	35	2.6	35	84	7	103	23	17	6	52	1.68
16047782--16047873	35	2.6	35	83	6	98	22	18	7	51	1.71
16048029--16048112	35	2.4	35	84	4	107	16	17	13	52	1.75
16048172--16048247	35	2.2	35	90	0	116	18	17	11	52	1.74
16049946--16049975	11	2.8	11	95	5	53	86	3	10	0	0.67
16050001--16050071	7	10.4	7	77	17	53	73	0	25	1	0.92
16050005--16050077	27	2.7	28	79	12	80	72	1	24	1	1.00
16050120--16050191	29	2.4	30	81	11	76	61	8	18	12	1.55
16051075--16051118	23	1.9	23	90	0	70	52	31	0	15	1.44
16052598--16052653	21	2.7	21	97	0	103	21	26	26	25	1.99
16053276--16053324	26	1.9	26	87	4	73	14	2	6	77	1.05
16053304--16053350	23	2.0	24	83	8	60	10	2	6	80	0.96
16053517--16053550	14	2.3	15	90	10	61	23	5	14	55	1.61
16058173--16058219	20	2.3	20	88	0	67	74	0	17	8	1.05
16059539--16059589	23	2.3	22	83	12	68	37	7	7	47	1.62
16059564--16059658	47	2.0	47	83	4	120	34	8	11	45	1.71
16059517--16059901	114	3.4	112	80	7	415	36	8	13	42	1.74
16059656--16059700	23	2.0	23	86	8	65	42	8	11	37	1.72
16059612--16059745	67	2.0	68	81	8	157	35	7	13	43	1.72
16059534--16059836	113	2.7	114	83	5	357	36	8	11	42	1.72
16059791--16059901	45	2.4	46	78	10	120	36	9	14	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16059828--16059913	45	1.9	45	83	4	111	37	6	13	41	1.72
16059937--16060042	47	2.3	46	77	3	106	32	8	11	48	1.69
16060079--16060138	18	3.3	19	76	9	61	28	15	13	43	1.84
16061739--16061769	15	2.1	15	93	0	53	45	3	29	22	1.68
16064108--16064160	3	17.7	3	100	0	106	33	0	32	33	1.58
16064801--16064842	21	2.0	21	90	0	66	23	14	28	33	1.94
16075268--16075306	20	2.0	20	89	0	60	82	17	0	0	0.68
16075266--16075336	26	2.7	25	72	14	63	80	16	1	1	0.86
16075312--16075375	28	2.2	28	86	5	83	76	10	4	7	1.14
16075288--16075374	28	3.1	28	73	14	74	77	13	3	5	1.09
16075844--16075925	41	2.0	41	85	0	110	36	18	13	31	1.89
16076141--16076182	22	1.9	22	90	0	66	28	16	19	35	1.93
16076356--16076570	37	5.8	37	83	5	274	26	15	21	35	1.94
16080412--16080533	36	3.3	37	84	6	151	23	14	14	46	1.82
16080412--16080468	17	3.2	17	75	9	60	24	15	12	47	1.80
16080417--16080534	19	6.4	19	73	16	106	23	14	15	46	1.82
16080508--16080560	26	1.9	28	85	11	74	24	18	15	41	1.89
16080640--16080712	22	3.5	22	78	12	64	34	10	12	42	1.78
16083314--16083340	12	2.2	12	100	0	54	11	18	0	70	1.16
16083552--16083589	1	38.0	1	100	0	76	100	0	0	0	0.00
16084456--16084571	18	5.8	18	67	21	54	42	6	0	50	1.32
16084514--16084580	20	3.2	20	74	14	64	40	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16084532--16084589	20	3.3	17	76	21	57	46	3	0	50	1.18
16086413--16086475	23	2.7	23	80	12	65	61	0	0	38	0.96
16086422--16086502	27	2.8	29	75	11	76	61	0	0	38	0.96
16087232--16087280	19	2.6	18	81	9	53	63	2	2	32	1.17
16090415--16090467	26	2.0	26	100	0	106	35	7	15	41	1.75
16091706--16091758	23	2.3	23	93	0	88	33	9	28	28	1.88
16093818--16093869	18	2.9	18	85	0	77	51	3	0	44	1.19
16093817--16093868	8	6.0	8	77	16	50	53	1	0	44	1.11
16094719--16094887	71	2.3	72	80	9	175	50	6	8	34	1.59
16094770--16095023	117	2.2	116	79	12	267	48	7	10	33	1.66
16094770--16095181	114	3.6	113	78	10	308	46	6	11	34	1.67
16094958--16095041	40	2.1	40	84	2	105	47	8	13	30	1.72
16094817--16095181	114	3.2	112	80	8	362	45	6	12	35	1.68
16094967--16095046	40	2.0	41	87	2	117	45	7	13	33	1.72
16094875--16095233	114	3.2	113	80	5	375	45	6	12	35	1.69
16095127--16095305	72	2.5	71	81	2	196	48	6	10	34	1.64
16095981--16096022	21	2.0	21	90	9	68	47	4	0	47	1.23
16098628--16098671	22	2.0	22	100	0	88	31	18	4	45	1.69
16101038--16101133	37	2.6	36	78	16	92	5	16	10	67	1.37
16101043--16101133	36	2.5	35	77	20	91	5	17	9	67	1.39
16104009--16104059	14	3.7	14	79	7	52	49	31	1	17	1.58
16104010--16104050	21	2.0	21	85	0	55	48	29	2	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16104105--16104145	19	2.1	20	95	4	75	43	48	2	4	1.37
16104241--16104293	27	1.9	28	85	11	74	30	15	7	47	1.73
16105804--16105865	19	3.4	19	77	18	69	79	0	9	11	0.95
16105815--16105865	8	5.9	8	82	17	50	78	0	9	11	0.97
16116762--16117060	99	3.0	101	84	3	383	29	9	20	40	1.84
16116814--16117089	149	1.9	149	84	3	376	30	7	19	42	1.79
16116751--16117092	50	6.9	50	80	5	336	30	8	19	40	1.82
16116813--16117102	99	2.9	99	78	4	316	30	7	20	42	1.79
16119265--16119360	13	7.2	13	77	14	65	45	23	2	28	1.64
16119265--16119308	20	2.2	20	91	0	70	47	25	0	27	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129