Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  23  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4675819--4676206
109
3.6
107
77
6
343
23
19
17
39
1.92
4675403--4676206
414
1.9
414
81
1
948
23
18
17
40
1.91
4676224--4676294
36
2.0
36
86
5
99
21
16
15
46
1.84
4676226--4676402
87
2.0
86
84
1
228
22
19
18
40
1.91
4678272--4678345
15
4.9
15
78
5
69
50
27
0
22
1.50
4683451--4683643
101
1.9
101
94
0
341
40
10
16
32
1.82
4686996--4687043
23
2.0
24
84
4
62
47
2
2
47
1.25
4688085--4688124
21
2.0
20
85
5
53
37
2
10
50
1.50
4689143--4689203
29
2.1
29
100
0
122
13
19
9
57
1.63
4690499--4690560
32
1.9
32
93
0
106
37
22
11
29
1.89
4693768--4693874
12
9.3
11
68
17
51
24
1
1
71
1.05
4693806--4693918
14
7.8
14
70
21
56
25
2
2
69
1.15
4693830--4693874
6
7.8
6
85
5
58
15
0
2
82
0.77
4694823--4694978
11
14.2
11
72
14
92
15
3
1
79
0.95
4694843--4694975
5
27.2
5
71
19
68
16
2
1
79
0.90
4694820--4694985
27
6.1
27
73
10
117
15
3
1
79
0.95
4694993--4695346
60
6.0
57
84
5
406
46
6
11
36
1.65
4694994--4695344
118
3.0
118
86
4
474
46
5
11
35
1.64
4699227--4699279
14
3.8
14
82
5
54
73
0
16
9
1.08
4699227--4699299
28
2.5
30
80
12
89
71
0
17
10
1.14
4699255--4699307
8
6.8
8
75
12
56
73
0
15
11
1.09
4699282--4699312
16
1.9
16
93
0
53
70
0
19
9
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4700560--4700980
41
10.1
41
87
4
587
23
17
22
35
1.95
4700560--4700980
83
5.1
83
88
2
600
23
17
22
35
1.95
4700981--4701230
113
2.2
112
88
7
359
45
11
14
28
1.80
4701290--4701460
41
4.1
41
87
4
229
25
15
22
36
1.94
4701467--4701527
1
61.0
1
80
0
68
90
8
0
1
0.53
4701467--4701527
8
7.8
8
91
8
90
90
8
0
1
0.53
4701733--4701837
14
7.4
14
70
18
58
25
2
2
68
1.17
4701759--4701798
17
2.4
16
84
15
55
15
0
2
82
0.77
4702375--4702415
20
2.0
20
85
0
55
34
19
9
36
1.85
4702804--4702880
11
7.7
10
81
12
61
14
5
1
79
0.97
4702804--4702885
17
5.2
16
75
11
64
14
4
1
79
0.96
4702816--4702885
27
2.6
25
78
17
68
14
4
1
80
0.94
4702815--4702871
18
3.2
18
85
2
80
12
3
1
82
0.87
4702844--4702890
17
3.0
16
84
9
53
17
4
0
78
0.90
4702893--4703186
60
4.9
59
84
5
380
47
7
9
35
1.65
4702906--4703186
119
2.4
118
90
3
422
45
7
9
36
1.67
4702906--4703186
59
4.8
58
85
7
370
45
7
9
36
1.67
4707469--4707515
22
2.0
24
84
8
62
48
2
2
46
1.25
4708555--4708594
21
2.0
20
85
5
53
37
2
10
50
1.50
4711460--4711523
32
2.0
32
93
0
110
35
23
14
26
1.93
4715940--4715997
21
2.8
21
82
7
64
65
3
0
31
1.09
4716446--4716500
20
2.6
22
75
13
62
52
25
0
21
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4716487--4716536
23
2.2
23
81
0
55
46
22
4
28
1.70
4717671--4717819
74
2.0
74
98
0
289
40
13
16
30
1.86
4722478--4722516
15
2.5
16
83
4
53
64
2
2
30
1.21
4728084--4728151
31
2.2
32
81
7
86
25
19
17
38
1.93
4731030--4731059
16
1.9
16
93
6
53
63
0
0
36
0.95
4731508--4731554
17
2.9
17
84
9
71
46
0
0
53
1.00
4731566--4731630
34
1.9
34
87
0
94
46
1
7
44
1.41
4736410--4736475
29
2.2
31
86
5
91
33
0
3
63
1.10
4736465--4736508
23
2.0
22
82
13
54
43
0
0
56
0.99
4737050--4737096
24
1.9
25
86
4
69
65
4
0
29
1.11
4737434--4737484
15
3.4
16
80
17
56
68
0
1
29
1.00
4737431--4737483
20
2.5
20
74
17
54
69
0
1
28
0.99
4739327--4739374
24
2.0
25
91
4
80
18
20
0
60
1.36
4741956--4742079
63
2.0
61
92
3
203
19
27
11
41
1.85
4749017--4749062
22
2.1
22
87
0
65
39
4
6
50
1.48
4754992--4755035
21
2.1
21
86
0
61
31
2
4
61
1.28
4758255--4758282
2
14.0
2
100
0
56
0
0
50
50
1.00
4765137--4765166
15
1.9
15
93
6
51
23
0
6
70
1.11
4766838--4766900
30
2.1
30
96
0
117
33
14
31
20
1.92
4773066--4773254
63
3.0
64
79
13
196
40
9
7
42
1.65
4773262--4773527
137
1.9
138
83
8
344
37
10
10
40
1.76
4773702--4773836
60
2.3
59
85
5
182
37
8
9
45
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4781525--4781652
29
4.6
29
71
15
74
60
0
4
35
1.18
4781740--4781787
19
2.7
18
78
15
55
54
0
4
41
1.20
4784846--4784908
21
3.0
21
86
2
83
57
1
1
39
1.18
4786501--4786687
60
3.1
61
79
9
181
41
9
17
31
1.81
4798894--4798925
2
16.0
2
100
0
64
50
0
0
50
1.00
4805142--4805188
19
2.3
21
78
14
62
42
0
0
57
0.98
4805166--4805229
24
2.5
24
73
14
58
53
0
0
46
1.00
4809705--4809734
2
15.0
2
92
0
51
0
53
0
46
1.00
4809978--4810005
12
2.3
12
100
0
56
67
25
0
7
1.15
4814051--4814095
20
2.3
20
85
7
58
40
6
0
53
1.27
4818435--4818478
19
2.2
20
84
4
63
36
2
2
59
1.23
4818468--4818549
11
7.3
11
70
15
51
56
0
0
43
0.99
4818497--4818549
20
2.5
22
87
9
74
56
0
0
43
0.99
4818495--4818538
13
3.9
12
75
25
51
50
0
0
50
1.00
4818484--4818558
32
2.3
33
79
6
91
60
0
0
40
0.97
4818812--4818942
65
2.0
65
96
0
244
18
23
12
45
1.83
4827660--4827807
75
2.0
75
93
2
253
41
2
2
54
1.23
4828312--4828355
21
2.1
21
95
0
79
50
2
9
38
1.47
4830158--4830199
22
1.9
22
81
18
52
35
2
28
33
1.70
4835447--4835491
20
2.2
21
88
7
67
53
0
0
46
1.00
4835959--4836007
21
2.3
21
85
3
62
40
2
6
51
1.38
4836101--4836137
17
2.1
17
90
5
56
40
5
2
51
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4836100--4836140
18
2.3
19
83
12
59
39
4
2
53
1.35
4836186--4836233
26
1.9
25
83
8
62
58
6
0
35
1.23
4838594--4838621
2
14.0
2
100
0
56
0
50
0
50
1.00
4838607--4838813
103
2.0
104
95
0
371
19
13
17
49
1.79
4839943--4839973
6
5.2
6
100
0
62
16
51
0
32
1.44
4841057--4841097
21
2.0
21
85
9
57
41
12
0
46
1.41
4841265--4841337
38
2.1
38
87
12
111
27
1
2
68
1.11
4841263--4841329
7
9.6
7
75
13
50
29
1
1
67
1.09
4856228--4856278
26
2.0
26
92
7
86
50
11
3
33
1.57
4856852--4856897
23
2.0
22
84
12
58
54
0
4
41
1.20
4864441--4864497
17
3.3
17
78
16
64
54
1
1
42
1.21
4865599--4865730
58
2.3
58
97
0
255
50
0
12
36
1.45
4867656--4867699
22
2.0
22
95
0
79
36
34
4
25
1.76
4868958--4868985
2
14.0
2
100
0
56
50
0
0
50
1.00
4874157--4874278
64
1.9
64
87
0
181
52
5
20
21
1.67
4875764--4875788
12
2.1
12
100
0
50
60
0
0
40
0.97
4876480--4876520
18
2.4
17
87
4
55
19
9
0
70
1.14
4876572--4876604
16
1.9
18
88
11
52
57
6
0
36
1.23
4876629--4876669
17
2.5
16
85
14
57
51
2
7
39
1.43
4878659--4878687
9
3.2
9
100
0
58
55
0
0
44
0.99
4880701--4880771
6
11.2
6
76
11
54
45
0
1
53
1.09
4880701--4880765
13
4.9
13
76
10
60
44
0
1
53
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4880705--4880792
39
2.2
41
78
8
101
52
1
1
45
1.15
4881027--4881065
2
20.0
2
89
5
62
53
0
0
46
1.00
4882588--4882622
12
2.9
12
91
0
61
37
0
22
40
1.55
4883051--4883101
24
2.1
25
82
10
61
49
0
1
49
1.12
4884295--4884347
7
7.7
7
79
8
56
33
1
0
64
1.05
4885495--4885535
3
13.7
3
100
0
82
31
0
0
68
0.90
4887777--4887802
12
2.2
12
100
0
52
30
0
19
50
1.48
4891150--4891191
18
2.3
19
79
4
50
52
16
9
21
1.72
4891151--4891194
19
2.3
19
84
7
54
52
15
6
25
1.68
4891655--4891696
4
10.8
4
84
5
59
71
0
4
23
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129