genome.fa.s13.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  113  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20231345--20231394	17	2.9	17	81	0	64	2	0	12	86	0.67
20231832--20231928	46	2.1	47	98	1	187	35	11	15	38	1.83
20231878--20232003	65	1.9	65	81	9	150	30	11	21	36	1.89
20231935--20232423	105	4.7	105	80	6	492	32	15	17	34	1.91
20231935--20232423	210	2.3	210	81	3	585	32	15	17	34	1.91
20234383--20234425	15	2.9	14	80	12	50	2	18	0	79	0.85
20234778--20234806	12	2.5	12	94	5	51	0	13	0	86	0.58
20234528--20234902	125	2.9	126	77	11	352	19	18	8	53	1.69
20238991--20239038	3	16.0	3	95	0	87	64	0	2	33	1.05
20239845--20239892	3	16.0	3	100	0	96	33	0	0	66	0.92
20243474--20243498	13	1.9	13	100	0	50	64	12	0	24	1.27
20244735--20244834	31	3.1	31	83	11	114	26	15	16	43	1.86
20244808--20244935	57	2.2	59	84	2	161	28	18	14	37	1.91
20245413--20245447	17	2.0	17	88	5	52	80	5	2	11	1.00
20249010--20249035	1	26.0	1	100	0	52	0	0	100	0	0.00
20266900--20266929	14	2.2	14	94	5	53	3	20	0	76	0.92
20269149--20269986	280	3.0	280	90	1	1308	36	14	17	31	1.90
20280399--20280459	30	2.0	31	87	3	88	26	18	4	50	1.66
20288593--20288852	44	5.9	44	82	0	241	30	11	14	43	1.80
20288595--20288862	88	3.1	87	80	4	270	30	10	14	44	1.79
20288593--20288862	132	2.1	132	81	0	308	30	11	14	44	1.79
20289224--20289291	26	2.6	25	74	4	64	67	1	5	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20289491--20289529	20	1.9	21	84	5	53	71	10	10	7	1.30
20289868--20289912	21	2.1	21	84	15	58	68	2	28	0	1.01
20290887--20290990	54	1.9	55	86	9	151	47	10	11	30	1.74
20298216--20298284	29	2.3	29	90	2	102	26	17	15	40	1.89
20301213--20301256	21	2.0	22	91	4	72	54	4	13	27	1.58
20301862--20301887	7	3.7	7	100	0	52	11	0	0	88	0.52
20306548--20306597	23	2.2	23	92	3	84	40	20	14	26	1.90
20307342--20307384	15	2.9	14	78	21	52	53	0	0	46	1.00
20307332--20307384	27	2.0	27	82	14	65	50	1	0	47	1.12
20317178--20317412	120	2.0	120	82	5	287	40	11	11	36	1.78
20319625--20319697	25	3.0	23	84	11	76	47	1	1	49	1.18
20319656--20319705	25	2.0	25	88	7	75	50	2	4	44	1.32
20319913--20319955	17	2.7	16	89	10	70	51	0	2	46	1.13
20320037--20320097	15	4.3	14	78	12	54	40	1	3	54	1.27
20320843--20320913	36	1.9	36	83	8	90	61	4	1	32	1.23
20320909--20321000	9	10.6	8	75	11	58	64	6	1	28	1.25
20320871--20320955	34	2.5	33	81	10	100	64	5	2	27	1.28
20320931--20320981	27	1.9	26	92	4	84	62	5	0	31	1.19
20320926--20321001	27	2.9	27	82	2	82	64	6	0	28	1.18
20320933--20321000	9	7.7	9	79	8	68	64	5	0	29	1.17
20320989--20321026	17	2.2	18	85	4	51	73	2	5	18	1.14
20321076--20321137	21	2.9	21	92	4	97	51	6	0	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20321114--20321170	9	6.1	9	76	13	53	54	5	1	38	1.33
20321182--20321219	20	1.9	20	88	0	58	65	2	5	26	1.27
20321182--20321226	20	2.4	19	85	7	56	68	2	4	24	1.19
20323164--20323197	15	2.4	14	90	5	50	82	0	11	5	0.83
20323811--20323835	9	2.8	9	100	0	50	8	0	0	92	0.40
20324664--20324731	17	3.8	17	73	21	50	19	2	5	72	1.19
20324657--20324714	17	3.4	17	75	11	55	22	1	3	72	1.09
20326462--20326668	20	10.3	20	83	3	238	52	9	4	33	1.54
20326462--20326677	101	2.1	101	84	2	283	52	8	5	33	1.55
20326462--20326667	81	2.6	81	85	3	283	52	9	4	33	1.53
20326807--20326863	14	4.0	15	78	17	50	75	1	3	19	1.04
20327522--20327578	28	2.0	28	100	0	114	42	7	8	42	1.63
20333227--20333264	17	2.2	17	100	0	76	28	0	18	52	1.45
20336910--20336942	14	2.3	15	89	5	50	63	12	3	21	1.41
20336977--20337273	20	14.8	20	85	2	373	53	8	4	33	1.51
20336956--20337010	16	3.2	16	74	18	56	61	10	1	25	1.39
20337760--20337832	35	2.1	35	89	0	110	45	27	10	16	1.81
20338418--20338489	18	4.0	18	77	10	67	68	8	0	23	1.17
20338413--20338510	12	8.1	12	79	2	79	64	7	3	25	1.34
20340482--20340508	13	2.1	13	100	0	54	85	0	14	0	0.61
20340715--20341095	31	12.4	31	69	8	125	31	17	17	33	1.93
20340840--20340945	30	3.5	30	78	5	115	27	15	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20340833--20341037	61	3.4	60	79	4	198	30	15	18	35	1.92
20340925--20341074	61	2.4	62	83	9	175	34	16	15	34	1.90
20341053--20341147	35	3.0	30	73	19	86	33	16	14	34	1.90
20341623--20341937	162	1.9	162	82	3	384	24	15	18	41	1.89
20342642--20342707	17	3.9	17	78	7	62	63	9	0	27	1.24
20342685--20342732	25	1.9	25	91	0	78	75	8	2	14	1.13
20345365--20345402	18	2.2	17	86	9	51	42	0	5	52	1.24
20346590--20346617	14	2.0	14	100	0	56	28	0	7	64	1.20
20349694--20349733	21	2.0	21	85	5	55	45	0	2	52	1.14
20352708--20352742	18	1.9	18	88	0	52	0	22	8	68	1.16
20357412--20357448	14	2.8	14	88	8	51	40	5	0	54	1.24
20358690--20358751	25	2.5	23	73	16	61	46	11	9	32	1.72
20364273--20364347	35	2.1	35	97	0	141	54	6	22	16	1.65
20365982--20366034	23	2.4	22	75	12	54	56	13	18	11	1.66
20369352--20369393	14	2.9	14	82	10	50	47	0	0	52	1.00
20370334--20370381	19	2.4	21	86	6	73	75	2	4	18	1.07
20372997--20373073	25	3.0	26	74	14	70	44	0	1	54	1.08
20383757--20383799	14	3.1	14	86	3	61	23	0	2	74	0.93
20387179--20387235	19	3.1	18	80	14	55	47	1	1	49	1.22
20388383--20388458	30	2.6	28	80	12	75	7	18	1	72	1.16
20391180--20391213	17	2.0	18	88	11	54	11	11	8	67	1.42
20393928--20393971	22	2.0	22	82	4	54	47	0	4	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20393975--20394017	21	2.0	21	82	8	52	48	0	6	44	1.29
20394172--20394215	22	2.0	22	82	4	54	47	0	4	47	1.22
20393798--20394287	244	2.0	244	99	0	962	44	8	6	39	1.62
20393864--20394246	120	3.2	120	65	18	322	45	7	6	41	1.57
20394671--20394702	12	2.6	13	85	14	50	81	0	12	6	0.87
20397037--20397090	27	2.0	28	88	3	83	50	16	18	14	1.79
20397046--20397098	27	2.0	27	84	0	70	50	16	16	15	1.78
20399709--20399776	19	3.6	20	69	25	58	51	0	0	48	1.00
20399707--20399748	17	2.4	18	84	7	52	54	0	0	45	0.99
20399830--20399910	15	4.8	16	73	22	67	41	1	2	54	1.21
20399840--20399881	23	1.9	21	90	9	66	45	0	2	52	1.13
20399795--20399910	36	3.3	34	81	12	103	39	2	1	56	1.23
20401198--20401801	300	2.0	303	93	1	1045	37	10	12	39	1.76
20403432--20403492	23	2.7	23	86	0	86	31	1	37	29	1.67
20404099--20404195	28	3.5	28	83	5	106	50	16	9	23	1.74
20405240--20405278	20	1.9	21	89	5	62	48	12	5	33	1.63
20405717--20406055	165	2.0	167	84	4	436	45	10	9	35	1.71
20407480--20407524	15	3.0	15	81	12	56	40	2	2	55	1.24
20408818--20409422	301	2.0	301	94	0	1066	36	9	12	40	1.76
20411685--20411778	28	3.4	28	86	0	107	52	14	10	22	1.73
20411713--20411784	28	2.6	28	88	0	108	50	13	11	25	1.75
20412820--20412858	20	1.9	21	89	5	62	48	10	5	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20413298--20413636	165	2.0	167	84	5	447	43	11	10	34	1.74
20415156--20415206	5	9.6	5	76	19	50	19	0	3	76	0.94
20416426--20416467	21	2.0	22	90	4	68	64	0	23	11	1.27
20416492--20416554	9	7.2	9	71	7	58	80	0	12	6	0.88
20416493--20416552	23	2.7	22	80	12	68	83	0	10	6	0.81
20416491--20416530	20	2.0	21	85	14	57	80	0	12	7	0.91
20418750--20418799	5	9.6	5	79	16	57	20	0	2	78	0.86
20420665--20420890	58	3.9	59	83	5	273	45	6	10	37	1.65
20430933--20430985	24	2.2	24	87	9	81	81	3	1	13	0.92
20430899--20430973	19	3.9	19	83	10	89	78	5	0	16	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129