genome.fa.s13.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  122  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22127480--22127522	22	2.0	22	86	9	61	44	6	4	44	1.52
22127667--22128016	22	16.1	22	67	8	124	34	7	6	51	1.57
22127675--22127744	19	3.5	19	72	11	50	35	8	7	48	1.61
22127824--22127922	43	2.3	44	83	1	128	32	7	9	51	1.60
22128043--22128134	22	4.2	22	77	0	76	40	8	2	48	1.46
22127896--22128157	145	1.8	145	83	1	355	37	6	5	50	1.52
22127862--22128323	11	42.0	11	62	10	68	36	5	5	51	1.50
22128240--22128322	22	3.8	22	78	12	82	38	4	3	53	1.40
22128038--22128322	44	6.5	44	73	4	155	36	6	5	51	1.50
22128945--22129214	148	1.8	149	84	4	375	37	9	7	45	1.64
22130679--22130725	17	3.0	16	85	11	62	42	0	0	57	0.98
22131158--22131456	152	2.0	152	90	0	474	42	4	6	46	1.50
22132080--22132124	14	3.2	14	81	12	56	55	0	0	44	0.99
22141497--22141524	7	4.0	7	100	0	56	85	0	14	0	0.59
22143289--22143324	18	2.0	18	100	0	72	27	33	16	22	1.95
22144477--22144508	12	2.7	12	95	0	55	18	9	46	25	1.79
22145538--22145600	34	1.9	34	83	6	85	53	7	1	36	1.40
22146857--22146900	22	1.9	24	86	9	65	38	2	4	54	1.33
22147653--22147690	4	9.5	4	94	0	67	73	2	0	23	0.95
22155693--22155727	16	2.2	16	100	0	70	60	0	0	40	0.97
22156656--22156687	9	3.4	10	87	12	50	25	0	0	75	0.81
22158121--22158165	24	1.9	24	86	4	65	24	4	4	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22160432--22160466	14	2.6	13	86	8	52	11	11	0	77	1.00
22162532--22162569	16	2.4	16	82	4	51	73	0	5	21	1.02
22162583--22162622	21	1.9	22	90	10	66	62	0	0	37	0.95
22162653--22162693	19	2.2	20	91	8	68	51	2	0	46	1.14
22163419--22163469	8	6.4	8	75	8	50	80	1	1	15	0.89
22163419--22163475	15	3.8	14	80	15	53	78	1	3	15	0.96
22163418--22163475	23	2.5	23	81	8	73	77	1	3	17	0.99
22164592--22164622	2	15.5	2	100	0	62	48	0	0	51	1.00
22165444--22165469	4	6.5	4	100	0	52	23	0	0	76	0.78
22166123--22166232	31	3.3	33	86	8	152	30	20	11	36	1.89
22171150--22171179	15	2.0	15	100	0	60	20	0	13	66	1.24
22179187--22179237	24	2.2	24	82	3	59	31	7	0	60	1.25
22187516--22188062	61	9.1	59	78	9	462	49	5	9	35	1.59
22187537--22187754	117	1.9	118	82	3	280	50	4	9	36	1.55
22187515--22188065	60	9.2	59	77	11	383	49	5	9	35	1.59
22187537--22188062	123	4.3	123	77	10	401	49	5	10	34	1.59
22191727--22191812	30	2.9	30	82	3	93	44	2	9	44	1.49
22196561--22196595	14	2.6	13	90	4	52	14	2	0	82	0.77
22197786--22197827	17	2.5	17	88	7	59	71	9	0	19	1.13
22199163--22199195	17	2.0	16	94	5	57	9	12	6	72	1.26
22203124--22203179	19	3.2	19	63	31	52	46	7	21	25	1.76
22203106--22203209	33	3.2	33	87	5	156	45	6	21	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22204229--22204276	23	2.1	23	84	0	60	33	0	0	66	0.92
22204697--22204742	6	7.3	6	83	16	58	34	0	0	65	0.93
22204698--22204751	19	2.8	21	69	25	55	37	0	0	62	0.95
22205486--22205520	4	8.8	4	100	0	70	77	0	0	22	0.78
22206357--22206390	14	2.4	14	100	0	68	32	0	0	67	0.91
22206386--22206441	11	5.0	11	78	14	53	44	0	0	55	0.99
22206387--22206439	20	2.5	20	80	17	63	43	0	0	56	0.99
22206419--22206480	33	1.9	32	86	3	88	50	3	0	46	1.17
22208464--22208514	21	2.4	22	80	6	61	39	0	0	60	0.97
22213362--22213480	59	2.0	58	90	1	184	31	25	13	29	1.94
22215015--22215056	21	2.0	21	90	0	66	40	14	2	42	1.58
22216204--22216241	16	2.3	17	86	4	51	34	0	2	63	1.09
22216260--22216312	20	2.5	22	87	9	74	54	0	0	45	0.99
22216258--22216301	13	3.9	12	75	25	51	47	0	0	52	1.00
22216305--22216363	15	3.9	15	80	8	57	62	1	3	32	1.21
22220662--22220705	19	2.3	19	88	0	61	9	34	4	52	1.54
22220670--22220709	19	2.1	19	95	0	71	10	27	5	57	1.52
22222194--22222226	6	5.5	6	92	0	57	66	0	3	30	1.06
22223491--22223584	31	3.0	31	78	15	79	50	1	1	47	1.15
22224613--22224687	12	6.3	12	77	13	75	37	1	0	61	1.05
22224615--22224685	23	3.1	22	80	6	70	36	1	0	61	1.05
22224669--22224730	22	2.8	22	78	11	72	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22224679--22224722	21	2.1	22	91	8	74	43	0	0	56	0.99
22224720--22224820	37	2.7	37	83	10	118	54	2	0	41	1.22
22224737--22224847	32	3.5	32	79	0	105	56	2	1	38	1.24
22224737--22224860	64	1.9	64	80	6	144	59	4	1	34	1.26
22225161--22225208	19	2.6	19	84	15	66	77	2	2	18	0.97
22226195--22226225	15	2.1	15	93	0	53	45	0	0	54	0.99
22226206--22226561	172	2.1	170	95	1	640	48	3	3	44	1.37
22234426--22234456	16	1.9	16	93	0	53	54	0	3	41	1.16
22234772--22234801	2	15.0	2	100	0	60	50	0	0	50	1.00
22237705--22237812	54	2.0	54	96	0	198	26	5	27	39	1.78
22241637--22241709	20	3.7	19	73	7	56	43	0	1	54	1.08
22241640--22241706	28	2.3	29	82	7	82	43	0	1	55	1.09
22241807--22241866	29	2.1	29	90	0	93	45	3	1	50	1.28
22245187--22245227	20	2.0	21	85	4	57	29	4	4	60	1.38
22262105--22262150	20	2.3	21	77	11	51	47	8	4	39	1.54
22266843--22266889	19	2.4	21	76	20	57	40	0	0	59	0.97
22266857--22266886	10	3.1	10	95	4	53	36	0	0	63	0.95
22266859--22266888	9	3.2	9	95	4	51	36	0	0	63	0.95
22267907--22267944	2	19.0	2	100	0	76	50	0	0	50	1.00
22273378--22273431	23	2.3	23	100	0	108	53	11	20	14	1.71
22274261--22274332	26	2.8	27	70	19	64	47	0	2	50	1.15
22274281--22274441	76	2.1	76	77	14	165	44	0	3	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22274393--22274498	53	1.9	56	81	9	130	48	0	0	50	1.13
22275779--22275804	7	3.7	7	100	0	52	15	0	0	84	0.62
22276673--22276769	48	2.0	48	91	0	158	41	22	15	20	1.90
22278696--22278721	2	13.0	2	100	0	52	50	0	0	50	1.00
22283098--22283143	21	2.2	21	84	7	58	15	10	23	50	1.75
22286430--22286849	210	2.0	210	98	0	804	36	7	9	46	1.66
22298084--22298137	2	27.0	2	96	0	99	51	0	0	48	1.00
22298576--22298601	12	2.2	12	100	0	52	38	0	0	61	0.96
22298581--22298633	27	2.0	26	81	3	61	39	0	0	60	0.97
22300586--22300634	24	2.0	24	92	0	80	34	0	2	63	1.06
22301463--22301525	16	3.8	17	77	14	69	44	0	1	53	1.10
22303445--22303487	11	3.8	11	87	6	59	72	2	0	25	0.97
22303440--22303473	15	2.2	15	94	5	59	70	0	0	29	0.87
22303969--22304001	14	2.5	14	90	9	52	48	0	0	51	1.00
22303966--22304016	19	2.6	19	81	15	59	49	1	0	49	1.12
22304214--22304241	2	14.0	2	100	0	56	50	0	0	50	1.00
22304330--22304354	3	8.3	3	100	0	50	68	0	0	32	0.90
22304882--22304921	19	2.2	19	86	4	55	47	2	2	47	1.29
22306695--22306723	15	1.9	15	100	0	58	62	0	0	37	0.96
22307394--22307447	22	2.7	21	81	16	53	44	1	0	53	1.11
22307411--22307456	18	2.6	17	80	10	56	47	0	0	52	1.00
22307465--22307506	23	1.9	22	85	9	59	45	2	2	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22307486--22307520	16	2.1	16	89	10	52	57	0	0	42	0.99
22307498--22307530	11	2.8	12	86	9	50	60	0	0	39	0.97
22327849--22327886	3	13.0	3	94	5	69	31	0	0	68	0.90
22333756--22334364	231	2.6	232	85	3	791	43	11	4	40	1.62
22334433--22334473	17	2.4	17	88	8	57	14	14	4	65	1.42
22337250--22337642	58	6.8	56	83	10	420	36	13	6	42	1.71
22337250--22337639	119	3.3	115	83	11	490	36	13	6	43	1.71
22337655--22337704	13	4.1	12	78	21	59	82	0	0	18	0.68
22337655--22337704	6	8.3	6	89	10	68	82	0	0	18	0.68
22338614--22338713	42	2.4	40	81	9	119	61	3	7	29	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129