genome.fa.s13.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  82  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15012192--15012260	36	1.9	36	82	11	88	55	1	2	40	1.24
15013312--15013361	6	8.5	6	83	16	61	46	0	0	54	1.00
15013303--15013366	26	2.5	26	75	14	69	45	0	1	53	1.10
15013321--15013388	20	3.2	20	83	8	82	47	0	0	52	1.00
15013316--15013369	25	2.2	26	83	6	76	44	0	0	55	0.99
15013852--15013910	29	2.0	29	83	6	75	52	1	1	44	1.21
15014293--15014339	24	1.9	25	87	12	71	48	4	2	44	1.34
15014636--15014688	27	2.0	27	85	14	74	45	1	0	52	1.11
15015185--15015250	25	2.8	23	68	17	62	51	3	3	42	1.32
15015320--15015374	27	2.0	26	83	13	67	49	3	0	47	1.19
15015670--15015716	14	3.4	14	72	21	53	46	2	0	51	1.13
15015669--15015739	28	2.5	29	79	6	83	46	2	1	49	1.25
15016033--15016135	12	8.6	11	73	25	68	45	1	1	50	1.24
15016025--15016081	10	5.1	11	74	17	55	38	1	0	59	1.08
15016104--15016168	25	2.4	26	80	15	69	55	1	0	43	1.09
15016227--15016258	10	3.1	11	82	17	50	53	0	0	46	1.00
15016543--15016578	14	2.6	15	91	8	51	55	0	0	44	0.99
15017343--15017403	13	5.2	12	81	15	67	44	0	0	55	0.99
15017344--15017399	17	3.1	17	73	17	51	46	0	0	53	1.00
15017434--15017525	43	2.3	40	77	15	93	55	2	0	42	1.12
15017448--15017499	14	3.6	16	73	19	51	55	1	0	42	1.10
15018283--15018343	20	3.1	19	74	9	59	21	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15019182--15019211	15	2.0	15	93	0	51	36	33	13	16	1.88
15019358--15019392	18	1.9	18	88	0	52	42	2	34	20	1.66
15027484--15027603	11	11.0	11	66	19	56	45	0	3	50	1.24
15027586--15027627	15	2.7	16	88	3	59	42	0	2	54	1.13
15027572--15027623	18	2.9	18	77	11	63	44	0	1	53	1.11
15027685--15027759	28	2.7	26	80	17	73	45	0	2	52	1.15
15028463--15028521	25	2.4	25	94	0	100	50	8	10	30	1.66
15028608--15028655	22	2.2	21	82	10	53	45	2	0	52	1.12
15028617--15028668	22	2.3	22	83	12	61	50	1	1	46	1.23
15030065--15030125	30	2.1	29	81	3	68	50	3	3	42	1.34
15030226--15030393	22	7.3	22	69	23	89	47	1	2	48	1.25
15030231--15030401	12	14.6	12	64	24	64	47	1	2	48	1.25
15030458--15030555	23	4.6	22	71	16	64	48	2	2	46	1.25
15030493--15030554	29	2.1	28	82	11	72	51	1	1	45	1.20
15030656--15030704	25	1.9	26	87	4	73	51	0	6	42	1.27
15030788--15030815	12	2.3	12	100	0	56	39	0	0	60	0.97
15031032--15031083	15	3.5	15	81	0	59	53	0	3	42	1.19
15031212--15031253	15	2.9	14	86	13	50	45	2	2	50	1.27
15031511--15031567	28	2.0	30	82	6	73	43	1	3	50	1.29
15031737--15031780	20	2.2	20	88	8	63	45	0	2	52	1.13
15032022--15032064	20	2.2	19	88	12	61	53	0	0	46	1.00
15032277--15032317	20	2.0	20	95	0	73	31	9	12	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15032496--15032556	20	3.1	19	79	11	70	50	1	1	45	1.21
15032629--15032653	12	2.1	12	100	0	50	48	0	0	52	1.00
15033195--15033235	14	2.7	15	92	7	66	56	0	2	41	1.13
15033521--15033556	18	1.9	19	88	5	56	55	5	0	38	1.23
15033542--15033603	23	2.6	25	77	12	67	51	4	1	41	1.33
15034946--15034988	3	13.7	3	90	9	68	34	0	0	65	0.93
15035071--15035145	25	3.0	25	78	18	75	49	1	1	48	1.18
15036956--15036982	14	1.9	14	100	0	54	29	0	3	66	1.09
15036992--15037020	14	2.1	14	93	6	51	58	0	0	41	0.98
15037155--15037196	14	2.8	15	85	10	59	38	2	2	57	1.25
15037155--15037199	15	3.1	14	87	6	63	35	2	2	60	1.22
15037370--15037429	20	2.9	20	80	16	61	43	3	0	53	1.17
15037383--15037432	27	1.9	25	88	8	73	48	2	0	50	1.12
15037382--15037454	4	17.5	4	76	20	62	49	2	0	47	1.15
15037381--15037456	21	3.6	21	83	15	79	48	2	0	48	1.15
15037419--15037491	21	3.4	21	77	17	55	56	1	1	41	1.16
15037455--15037494	16	2.5	15	80	11	53	62	0	2	35	1.09
15037619--15037699	35	2.5	31	78	11	81	44	0	3	51	1.19
15037811--15037912	29	3.6	29	73	21	83	44	1	2	50	1.28
15038328--15038382	29	1.9	28	82	10	67	56	3	0	40	1.17
15038355--15038386	17	1.9	16	93	6	55	56	3	0	40	1.15
15039681--15039748	16	4.4	16	68	18	54	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15039750--15039817	27	2.6	28	84	9	81	47	1	0	51	1.09
15040014--15040043	10	3.1	10	90	9	53	50	0	0	50	1.00
15040014--15040092	16	4.6	17	68	27	51	48	1	1	49	1.17
15040015--15040080	19	3.5	19	73	26	61	46	1	1	50	1.20
15040073--15040132	18	3.3	18	77	11	61	50	0	0	50	1.00
15040363--15040394	16	2.0	16	93	0	55	53	0	0	46	1.00
15040449--15040549	28	3.8	28	69	20	72	50	2	0	46	1.16
15040491--15040538	26	1.9	24	83	8	60	50	4	0	45	1.21
15040533--15040700	69	2.5	65	73	15	146	52	1	0	45	1.11
15040572--15040699	37	3.6	36	72	22	103	53	1	0	44	1.09
15040615--15040688	9	8.1	9	73	21	57	52	1	0	45	1.09
15040572--15040684	37	3.1	37	76	20	114	52	1	0	46	1.11
15041343--15041383	21	1.9	22	85	5	57	58	2	0	39	1.11
15042096--15042120	12	2.1	12	100	0	50	60	0	0	40	0.97
15042536--15042579	15	2.9	15	80	6	52	45	0	0	54	0.99
15042551--15042630	23	3.3	23	68	26	58	50	1	1	47	1.17
15042919--15042958	18	2.2	18	86	0	53	42	5	2	50	1.37
15042948--15042978	3	10.7	3	93	6	55	35	0	0	64	0.94
15043086--15043130	23	2.0	23	83	16	58	48	2	0	48	1.13
15043135--15043181	10	4.7	10	81	7	60	46	0	2	51	1.13
15043402--15043461	23	2.6	24	84	5	79	46	5	1	46	1.34
15045112--15045174	33	2.0	29	85	11	81	42	0	6	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15045927--15045992	29	2.4	28	80	16	75	48	3	1	46	1.26
15045938--15045997	20	3.2	19	71	22	54	46	1	1	50	1.21
15046838--15046880	23	1.9	21	81	13	50	60	4	2	32	1.30
15047043--15047116	25	3.2	25	66	19	61	47	4	0	48	1.20
15047044--15047132	14	6.1	14	70	23	51	47	3	0	49	1.18
15047216--15047293	22	3.5	22	83	13	90	43	3	5	47	1.43
15047621--15047672	17	2.9	17	85	5	59	40	0	3	55	1.18
15048863--15048907	22	2.0	22	86	0	63	44	2	4	48	1.35
15048894--15048957	21	3.0	22	76	17	71	51	0	0	48	1.00
15049081--15049166	21	4.1	21	69	20	72	56	0	3	39	1.16
15049721--15049798	13	5.8	13	71	21	63	52	1	2	43	1.23
15050387--15050420	15	2.3	15	90	10	52	44	2	0	52	1.16
15050477--15050532	13	4.2	13	80	8	67	55	0	0	44	0.99
15051650--15051707	20	2.9	21	79	5	66	50	0	1	48	1.11
15051666--15051713	14	3.6	13	78	13	53	47	0	2	50	1.12
15051697--15051731	16	2.1	17	89	5	54	42	0	0	57	0.99
15051692--15051765	25	2.9	26	72	24	68	40	0	4	55	1.19
15051838--15051876	18	2.0	21	85	14	57	53	0	2	43	1.14
15051838--15051880	21	2.0	21	82	8	52	53	0	2	44	1.13
15051903--15051940	15	2.5	15	86	0	58	44	0	0	55	0.99
15051976--15052062	21	4.1	20	72	8	57	39	1	2	57	1.19
15052361--15052426	26	2.5	27	76	16	75	36	0	4	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15053867--15053934	26	2.7	24	75	6	64	48	0	5	45	1.26
15054380--15054419	15	2.6	16	84	15	57	45	2	0	52	1.14
15054627--15054674	15	3.4	14	85	5	53	56	0	2	41	1.11
15054637--15054672	15	2.4	15	95	0	63	55	0	2	41	1.14
15054623--15054680	28	2.1	27	84	9	73	55	1	1	41	1.20
15054752--15054805	17	3.2	17	77	15	58	55	3	0	40	1.17
15054826--15054861	11	3.3	11	88	0	54	41	0	5	52	1.24
15055942--15056027	9	10.9	8	67	20	56	45	3	0	51	1.18
15055978--15056025	16	2.9	16	81	12	62	52	2	0	45	1.12
15055996--15056044	11	4.2	11	78	14	53	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129